Wall clock time and date at job start Tue Mar 31 2020 15:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46631 * 2 1 4 4 H 1.08998 * 109.47259 * 305.00246 * 3 2 1 5 5 C 1.53000 * 109.47059 * 65.00445 * 3 2 1 6 6 N 1.46503 * 109.46542 * 185.00116 * 3 2 1 7 7 N 1.28464 * 124.87848 * 299.97242 * 6 3 2 8 8 C 1.31883 * 110.06040 * 180.02562 * 7 6 3 9 9 C 1.47557 * 126.52916 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00221 * 175.12490 * 9 8 7 11 11 N 1.34783 * 120.00175 * 355.13372 * 9 8 7 12 12 C 1.37035 * 120.00310 * 185.41146 * 11 9 8 13 13 H 1.08001 * 119.99731 * 5.32658 * 12 11 9 14 14 C 1.38954 * 120.00084 * 185.33315 * 12 11 9 15 15 N 1.31390 * 119.99950 * 5.41548 * 14 12 11 16 16 Si 1.86803 * 119.99863 * 185.42267 * 14 12 11 17 17 H 1.48493 * 109.46990 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47014 * 119.99773 * 16 14 12 19 19 H 1.48505 * 109.46576 * 239.99618 * 16 14 12 20 20 C 1.39344 * 119.99599 * 5.40910 * 11 9 8 21 21 C 1.39089 * 119.69856 * 84.89287 * 20 11 9 22 22 C 1.38381 * 119.09758 * 179.69863 * 21 20 11 23 23 C 1.38831 * 118.48948 * 0.58516 * 22 21 20 24 24 C 1.38155 * 119.31621 * 359.43352 * 23 22 21 25 25 N 1.31878 * 120.85127 * 0.28055 * 24 23 22 26 26 C 1.41565 * 106.94512 * 0.27044 * 8 7 6 27 27 C 1.35059 * 124.87515 * 120.00211 * 6 3 2 28 28 C 1.50702 * 126.37635 * 0.02562 * 27 6 3 29 29 H 1.08996 * 109.47195 * 299.99439 * 1 2 3 30 30 H 1.08998 * 109.47267 * 60.00009 * 1 2 3 31 31 H 1.09002 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47195 * 240.00561 * 2 1 3 33 33 H 1.08998 * 109.47267 * 119.99991 * 2 1 3 34 34 H 1.09000 * 109.46917 * 300.00152 * 5 3 2 35 35 H 1.09003 * 109.46935 * 59.99134 * 5 3 2 36 36 H 1.08994 * 109.46786 * 179.97438 * 5 3 2 37 37 H 0.96996 * 119.99479 * 180.02562 * 15 14 12 38 38 H 1.08001 * 120.45430 * 0.02562 * 21 20 11 39 39 H 1.07997 * 120.75432 * 180.30063 * 22 21 20 40 40 H 1.08003 * 120.34107 * 179.71078 * 23 22 21 41 41 H 1.07996 * 119.57013 * 180.25235 * 24 23 22 42 42 H 1.07994 * 127.24923 * 179.71631 * 26 8 7 43 43 H 1.09004 * 109.46743 * 89.99655 * 28 27 6 44 44 H 1.08998 * 109.46973 * 209.99805 * 28 27 6 45 45 H 1.08997 * 109.46822 * 330.00102 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 7 3.5000 1.4444 -0.1204 7 7 4.3065 0.8924 0.7134 8 6 5.5534 1.0713 0.3227 9 6 6.7669 0.5899 1.0103 10 8 7.8584 0.7460 0.4979 11 7 6.6654 -0.0232 2.2064 12 6 7.7972 -0.3709 2.8964 13 1 8.7678 -0.0779 2.5243 14 6 7.6960 -1.1004 4.0746 15 7 6.5262 -1.5483 4.4716 16 14 9.2229 -1.4443 5.0943 17 1 10.4060 -0.8360 4.4346 18 1 9.0555 -0.8594 6.4489 19 1 9.4208 -2.9116 5.2097 20 6 5.4096 -0.3033 2.7413 21 6 4.7473 -1.4690 2.3709 22 6 3.5035 -1.7380 2.9145 23 6 2.9574 -0.8224 3.8038 24 6 3.6712 0.3156 4.1266 25 7 4.8575 0.5426 3.5971 26 6 5.5061 1.8192 -0.8784 27 6 4.1914 2.0270 -1.1237 28 6 3.6080 2.7760 -2.2940 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5489 2.1251 1.3970 35 1 2.0698 1.5874 2.1492 36 1 1.9988 3.1541 1.3075 37 1 6.4556 -2.0572 5.2943 38 1 5.1999 -2.1575 1.6726 39 1 2.9677 -2.6374 2.6494 40 1 1.9865 -1.0001 4.2423 41 1 3.2521 1.0286 4.8211 42 1 6.3429 2.1517 -1.4747 43 1 3.5110 3.8311 -2.0381 44 1 4.2652 2.6703 -3.1571 45 1 2.6258 2.3684 -2.5331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:15 Heat of formation + Delta-G solvation = 95.027107 kcal Electronic energy + Delta-G solvation = -29720.317476 eV Core-core repulsion = 25933.470619 eV Total energy + Delta-G solvation = -3786.846857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.18205 -39.40687 -37.72015 -36.29093 -34.64316 -32.52766 -31.77993 -31.32686 -31.12624 -28.97702 -28.90633 -26.75706 -25.73439 -24.59329 -22.99829 -22.33783 -22.09208 -20.70170 -19.99951 -18.52719 -17.99891 -16.64295 -15.93395 -15.64886 -15.42716 -15.15407 -15.09389 -14.74722 -14.02580 -13.94364 -13.84924 -13.63350 -13.19212 -13.01944 -12.88942 -12.81602 -12.49800 -12.34315 -12.29122 -12.11958 -12.09587 -11.84941 -11.56793 -11.49772 -11.12372 -11.03048 -10.98287 -10.85541 -10.34914 -10.32108 -10.04623 -9.61905 -8.86811 -8.64351 -8.46258 -8.39374 -8.38877 -7.85610 -7.77861 -6.19758 -3.89984 2.30071 2.38682 2.54115 2.69182 2.86844 3.22306 3.26543 3.33447 4.06178 4.36625 4.43232 4.61430 4.72021 4.83535 4.91070 5.00660 5.09734 5.17677 5.23329 5.24694 5.37867 5.40412 5.50910 5.56934 5.68473 5.73724 5.76759 5.81809 5.83365 5.91618 5.95621 6.05798 6.19639 6.20404 6.26494 6.35584 6.40163 6.62065 6.80725 7.01076 7.20431 7.23970 7.30775 7.49939 7.75877 8.02588 8.40170 8.62055 9.06835 9.25196 9.44844 9.84523 10.66888 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014681 B = 0.005413 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.729276 B = 5171.386350 C = 6540.388623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.152 3.848 4 H 0.099 0.901 5 C -0.163 4.163 6 N -0.284 5.284 7 N -0.248 5.248 8 C 0.007 3.993 9 C 0.538 3.462 10 O -0.570 6.570 11 N -0.396 5.396 12 C -0.302 4.302 13 H 0.114 0.886 14 C 0.030 3.970 15 N -0.868 5.868 16 Si 0.938 3.062 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.473 3.527 21 C -0.117 4.117 22 C -0.075 4.075 23 C -0.206 4.206 24 C 0.112 3.888 25 N -0.482 5.482 26 C -0.186 4.186 27 C -0.008 4.008 28 C -0.077 4.077 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.272 0.728 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.485 3.581 -7.681 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.051 3.949 4 H 0.117 0.883 5 C -0.221 4.221 6 N -0.073 5.073 7 N -0.082 5.082 8 C -0.153 4.153 9 C 0.326 3.674 10 O -0.451 6.451 11 N -0.114 5.114 12 C -0.429 4.429 13 H 0.132 0.868 14 C -0.173 4.173 15 N -0.507 5.507 16 Si 0.765 3.235 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.207 1.207 20 C 0.246 3.754 21 C -0.139 4.139 22 C -0.102 4.102 23 C -0.227 4.227 24 C -0.046 4.046 25 N -0.194 5.194 26 C -0.214 4.214 27 C -0.132 4.132 28 C -0.135 4.135 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.171 0.829 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.276 3.806 -6.678 17.101 hybrid contribution 0.586 -0.739 -0.011 0.943 sum -14.690 3.067 -6.688 16.430 Atomic orbital electron populations 1.21772 0.94560 1.02333 1.01908 1.21886 0.96273 0.94848 1.04263 1.21484 0.74557 0.98491 1.00348 0.88341 1.22183 1.01821 1.00987 0.97108 1.45616 1.06685 1.38708 1.16255 1.73783 1.00379 1.17470 1.16518 1.22227 0.91466 1.04270 0.97378 1.16463 0.86205 0.83061 0.81688 1.90617 1.26928 1.61262 1.66322 1.41064 1.04193 1.50399 1.15699 1.19931 0.86382 1.32369 1.04168 0.86793 1.25322 0.98622 0.95923 0.97481 1.69539 1.22725 1.35076 1.23346 0.85657 0.80766 0.77914 0.79195 1.19014 1.20620 1.20684 1.17276 0.83825 0.87705 0.86621 1.21376 0.95050 0.96616 1.00870 1.20891 0.94998 0.97807 0.96480 1.21527 1.01031 0.97525 1.02575 1.21919 0.90264 0.95277 0.97137 1.67104 1.10640 1.33207 1.08498 1.21397 0.95223 1.05621 0.99157 1.21231 0.92162 1.04655 0.95152 1.20247 1.00529 0.98820 0.93944 0.92005 0.92801 0.92060 0.91593 0.89543 0.90665 0.90154 0.92255 0.91617 0.87651 0.87309 0.87344 0.85481 0.82915 0.91011 0.90050 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.13 -1.52 5.58 -26.73 -0.15 -1.67 16 3 C 0.15 1.81 3.02 -67.92 -0.21 1.60 16 4 H 0.10 0.90 6.55 -51.93 -0.34 0.56 16 5 C -0.16 -1.90 9.12 37.16 0.34 -1.56 16 6 N -0.28 -4.61 3.04 -50.65 -0.15 -4.76 16 7 N -0.25 -5.04 8.66 33.41 0.29 -4.75 16 8 C 0.01 0.17 6.88 -82.78 -0.57 -0.40 16 9 C 0.54 14.58 7.59 -12.46 -0.09 14.49 16 10 O -0.57 -16.56 16.53 5.29 0.09 -16.47 16 11 N -0.40 -11.02 2.73 -61.80 -0.17 -11.19 16 12 C -0.30 -8.70 9.53 -14.96 -0.14 -8.84 16 13 H 0.11 3.36 7.20 -52.49 -0.38 2.98 16 14 C 0.03 0.82 5.42 -17.48 -0.09 0.72 16 15 N -0.87 -23.52 9.77 55.50 0.54 -22.97 16 16 Si 0.94 21.40 29.56 -169.99 -5.02 16.38 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 C 0.47 11.88 1.29 -154.70 -0.20 11.68 16 21 C -0.12 -2.67 8.21 -39.21 -0.32 -2.99 16 22 C -0.08 -1.44 10.00 -39.31 -0.39 -1.83 16 23 C -0.21 -3.69 10.11 -39.39 -0.40 -4.09 16 24 C 0.11 2.28 10.93 -17.56 -0.19 2.08 16 25 N -0.48 -11.81 10.03 -12.35 -0.12 -11.94 16 26 C -0.19 -3.56 10.73 -39.35 -0.42 -3.98 16 27 C -0.01 -0.13 6.92 -82.20 -0.57 -0.70 16 28 C -0.08 -0.78 9.92 36.01 0.36 -0.42 16 29 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.19 7.97 -51.93 -0.41 0.78 16 34 H 0.07 0.65 6.56 -51.93 -0.34 0.30 16 35 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 41 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.15 2.75 8.06 -52.49 -0.42 2.32 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.52 7.02 -51.93 -0.36 0.15 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -34.08 373.77 -7.99 -42.07 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.37 Total: 4.74 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.70 Total: 3.26 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.39 Total: -55.61 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.09 Total: -16.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.08 -7.99 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.099 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds