Wall clock time and date at job start Tue Mar 31 2020 14:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31161 * 1 3 3 Cl 1.73593 * 120.00441 * 2 1 4 4 C 1.50701 * 119.99661 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47490 * 6.89921 * 4 2 1 6 6 C 1.53007 * 109.47346 * 246.90038 * 4 2 1 7 7 C 1.50696 * 109.47203 * 126.90147 * 4 2 1 8 8 O 1.21282 * 120.00209 * 125.86235 * 7 4 2 9 9 N 1.34781 * 120.00070 * 305.86327 * 7 4 2 10 10 C 1.46926 * 120.62733 * 355.13504 * 9 7 4 11 11 C 1.53189 * 108.77531 * 126.41522 * 10 9 7 12 12 C 1.53048 * 109.30941 * 54.63443 * 11 10 9 13 13 H 1.09008 * 109.44214 * 178.62342 * 12 11 10 14 14 N 1.46494 * 109.46190 * 58.65893 * 12 11 10 15 15 C 1.36936 * 120.00467 * 84.92704 * 14 12 11 16 16 H 1.08003 * 119.99640 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00394 * 179.97438 * 15 14 12 18 18 N 1.31618 * 119.99994 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99713 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47151 * 90.00132 * 19 17 15 21 21 H 1.48501 * 109.46968 * 209.99908 * 19 17 15 22 22 H 1.48494 * 109.47363 * 329.99625 * 19 17 15 23 23 C 1.53035 * 109.53655 * 298.63374 * 12 11 10 24 24 H 1.09000 * 109.50114 * 301.38185 * 23 12 11 25 25 C 1.53002 * 109.49441 * 181.31883 * 23 12 11 26 26 C 1.53005 * 109.47052 * 175.00223 * 25 23 12 27 27 C 1.46923 * 120.63315 * 175.16096 * 9 7 4 28 28 H 1.07994 * 120.00450 * 180.02562 * 1 2 3 29 29 H 1.07995 * 119.99375 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47720 * 175.15744 * 5 4 2 31 31 H 1.08999 * 109.47209 * 295.15563 * 5 4 2 32 32 H 1.09004 * 109.46763 * 55.15221 * 5 4 2 33 33 H 1.08998 * 109.46420 * 304.93086 * 6 4 2 34 34 H 1.08999 * 109.46809 * 64.92794 * 6 4 2 35 35 H 1.08996 * 109.47046 * 184.93297 * 6 4 2 36 36 H 1.08999 * 109.58691 * 6.62454 * 10 9 7 37 37 H 1.08998 * 109.58343 * 246.20211 * 10 9 7 38 38 H 1.08998 * 109.49520 * 294.68454 * 11 10 9 39 39 H 1.08993 * 109.49925 * 174.58193 * 11 10 9 40 40 H 0.97004 * 119.99550 * 264.93260 * 14 12 11 41 41 H 0.96997 * 119.99645 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47451 * 294.99876 * 25 23 12 43 43 H 1.09000 * 109.47429 * 55.00573 * 25 23 12 44 44 H 1.09007 * 109.47174 * 299.99806 * 26 25 23 45 45 H 1.08997 * 109.47425 * 59.99768 * 26 25 23 46 46 H 1.08998 * 109.47032 * 180.02562 * 26 25 23 47 47 H 1.09007 * 109.58848 * 113.79515 * 27 9 7 48 48 H 1.09007 * 109.58614 * 353.37391 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1797 1.5033 0.0000 4 6 2.0650 -1.3052 -0.0006 5 6 1.0799 -2.4627 -0.1744 6 6 2.8102 -1.4646 1.3262 7 6 3.0550 -1.3132 -1.1367 8 8 4.2263 -1.5404 -0.9189 9 7 2.6388 -1.0679 -2.3950 10 6 1.2099 -0.8962 -2.6907 11 6 1.0154 0.4312 -3.4302 12 6 1.9206 0.4605 -4.6639 13 1 1.7660 1.3939 -5.2053 14 7 1.5932 -0.6698 -5.5365 15 6 0.5726 -0.5619 -6.4431 16 1 0.0093 0.3568 -6.5151 17 6 0.2628 -1.6327 -7.2702 18 7 -0.7179 -1.5287 -8.1419 19 14 1.2376 -3.2213 -7.1460 20 1 0.5938 -4.1210 -6.1554 21 1 1.2691 -3.8877 -8.4728 22 1 2.6247 -2.9182 -6.7113 23 6 3.3840 0.3606 -4.2275 24 1 3.6216 1.1881 -3.5589 25 6 4.2896 0.4231 -5.4592 26 6 5.7535 0.4487 -5.0151 27 6 3.6053 -0.9676 -3.4970 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.6310 -3.3991 -0.2611 31 1 0.4180 -2.5095 0.6904 32 1 0.4886 -2.3043 -1.0763 33 1 3.4476 -0.5959 1.4915 34 1 2.0897 -1.5466 2.1400 35 1 3.4241 -2.3645 1.2923 36 1 0.6432 -0.8823 -1.7597 37 1 0.8654 -1.7181 -3.3183 38 1 1.2752 1.2576 -2.7687 39 1 -0.0252 0.5259 -3.7402 40 1 2.0994 -1.4948 -5.4719 41 1 -0.9346 -2.2771 -8.7196 42 1 4.1147 -0.4531 -6.0836 43 1 4.0668 1.3254 -6.0286 44 1 5.9285 1.3249 -4.3907 45 1 5.9764 -0.4535 -4.4456 46 1 6.3986 0.4937 -5.8925 47 1 3.4561 -1.7953 -4.1904 48 1 4.6192 -1.0007 -3.0980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037861657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:05 Heat of formation + Delta-G solvation = -24.265514 kcal Electronic energy + Delta-G solvation = -28623.854025 eV Core-core repulsion = 24932.941746 eV Total energy + Delta-G solvation = -3690.912280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.166 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.00517 -39.65674 -38.21154 -36.82154 -35.87685 -35.25473 -33.56159 -31.92063 -31.35700 -30.19172 -28.30456 -27.11885 -25.33360 -25.00485 -24.25471 -22.20196 -21.64214 -20.18780 -19.87831 -19.22731 -18.42621 -17.29902 -16.81804 -16.61567 -16.23883 -15.88496 -15.66773 -15.45065 -15.10036 -14.95997 -14.63063 -14.43019 -14.27260 -13.87198 -13.76401 -13.62282 -13.32971 -13.11792 -13.05660 -12.99780 -12.94499 -12.79878 -12.65958 -12.55835 -12.30158 -12.18305 -12.08757 -11.95147 -11.84483 -11.68531 -11.60001 -11.53343 -11.18517 -10.92805 -10.85742 -9.88176 -9.63060 -9.22039 -7.97120 -5.27581 0.86077 1.25511 1.36515 1.37591 1.44667 1.54267 1.97914 2.49554 3.34619 3.37446 3.39207 3.61218 3.73199 3.84116 3.93475 3.97933 3.99930 4.21497 4.29709 4.36068 4.41054 4.54447 4.57445 4.63645 4.70095 4.74429 4.79217 4.80245 4.84147 4.85439 4.94172 5.01265 5.11941 5.13454 5.15506 5.17171 5.21118 5.24691 5.25923 5.31226 5.36027 5.45880 5.62726 5.85401 6.26750 6.41753 7.08856 7.13394 7.90065 8.09010 9.24793 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.004974 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.416797 B = 5627.672106 C = 6147.072935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.081 4.081 3 Cl -0.092 7.092 4 C -0.040 4.040 5 C -0.156 4.156 6 C -0.121 4.121 7 C 0.523 3.477 8 O -0.576 6.576 9 N -0.596 5.596 10 C 0.097 3.903 11 C -0.139 4.139 12 C 0.179 3.821 13 H 0.047 0.953 14 N -0.740 5.740 15 C -0.209 4.209 16 H 0.062 0.938 17 C -0.056 4.056 18 N -0.983 5.983 19 Si 0.935 3.065 20 H -0.280 1.280 21 H -0.302 1.302 22 H -0.260 1.260 23 C -0.093 4.093 24 H 0.083 0.917 25 C -0.110 4.110 26 C -0.147 4.147 27 C 0.120 3.880 28 H 0.155 0.845 29 H 0.129 0.871 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.361 0.639 41 H 0.254 0.746 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 2.377 20.539 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 Cl -0.063 7.063 4 C -0.044 4.044 5 C -0.213 4.213 6 C -0.179 4.179 7 C 0.312 3.688 8 O -0.456 6.456 9 N -0.326 5.326 10 C -0.025 4.025 11 C -0.180 4.180 12 C 0.071 3.929 13 H 0.065 0.935 14 N -0.384 5.384 15 C -0.340 4.340 16 H 0.080 0.920 17 C -0.248 4.248 18 N -0.635 5.635 19 Si 0.765 3.235 20 H -0.206 1.206 21 H -0.229 1.229 22 H -0.185 1.185 23 C -0.113 4.113 24 H 0.101 0.899 25 C -0.148 4.148 26 C -0.204 4.204 27 C -0.003 4.003 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.195 0.805 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.386 2.485 20.526 21.366 hybrid contribution 0.426 -0.860 -0.886 1.306 sum 5.812 1.625 19.640 20.546 Atomic orbital electron populations 1.24575 0.92968 1.06181 0.95403 1.22938 0.94042 0.86264 1.07488 1.98385 1.78562 1.32416 1.96966 1.19989 0.95563 0.93766 0.95036 1.22328 0.98527 0.95511 1.04972 1.21652 1.00180 1.02610 0.93448 1.20802 0.88929 0.75306 0.83787 1.90637 1.19800 1.50916 1.84215 1.48094 1.08339 1.69301 1.06913 1.22336 0.80096 0.98160 1.01894 1.22322 1.00977 0.97074 0.97588 1.20376 0.92090 0.90399 0.90050 0.93536 1.42781 1.38981 1.13855 1.42796 1.18987 1.06630 0.98713 1.09720 0.91994 1.25235 0.99691 1.00931 0.98898 1.69848 1.34032 1.32511 1.27083 0.85706 0.79771 0.81512 0.76545 1.20614 1.22899 1.18472 1.21665 0.95294 0.97345 0.96989 0.89865 1.21402 0.94891 1.02003 0.96485 1.21788 0.95268 1.01872 1.01453 1.21569 0.93581 0.97204 0.87950 0.82790 0.85248 0.91367 0.87367 0.90545 0.92986 0.88989 0.91919 0.86204 0.92585 0.90893 0.91589 0.80470 0.93663 0.93322 0.91805 0.92079 0.93024 0.91983 0.93155 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 11.79 67.62 0.80 -1.28 16 2 C -0.08 -1.49 3.59 25.49 0.09 -1.40 16 3 Cl -0.09 -2.01 28.09 -2.72 -0.08 -2.09 16 4 C -0.04 -0.81 0.65 -53.67 -0.03 -0.85 16 5 C -0.16 -2.44 6.89 71.98 0.50 -1.94 16 6 C -0.12 -2.30 7.84 71.98 0.56 -1.74 16 7 C 0.52 14.92 6.06 87.66 0.53 15.45 16 8 O -0.58 -20.09 15.32 -3.03 -0.05 -20.14 16 9 N -0.60 -17.27 2.96 -818.91 -2.43 -19.70 16 10 C 0.10 2.67 4.34 86.36 0.37 3.05 16 11 C -0.14 -4.18 5.78 30.67 0.18 -4.00 16 12 C 0.18 6.26 2.53 45.02 0.11 6.37 16 13 H 0.05 1.75 8.08 -2.38 -0.02 1.73 16 14 N -0.74 -31.63 3.53 -322.81 -1.14 -32.77 16 15 C -0.21 -11.09 10.41 84.03 0.87 -10.21 16 16 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 17 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 18 N -0.98 -61.12 13.97 21.65 0.30 -60.82 16 19 Si 0.94 44.55 27.74 68.60 1.90 46.45 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 22 H -0.26 -11.40 6.52 99.48 0.65 -10.75 16 23 C -0.09 -2.81 2.14 -10.72 -0.02 -2.84 16 24 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 25 C -0.11 -3.26 5.19 30.60 0.16 -3.10 16 26 C -0.15 -3.60 9.67 71.98 0.70 -2.90 16 27 C 0.12 3.74 5.02 86.36 0.43 4.17 16 28 H 0.15 1.41 5.73 -2.91 -0.02 1.39 16 29 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 0.99 7.48 -2.39 -0.02 0.97 16 32 H 0.08 1.25 4.83 -2.38 -0.01 1.24 16 33 H 0.05 1.13 7.85 -2.39 -0.02 1.11 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.30 7.87 -2.39 -0.02 1.28 16 36 H 0.12 2.59 1.70 -2.39 0.00 2.59 16 37 H 0.06 1.81 7.74 -2.39 -0.02 1.79 16 38 H 0.07 1.96 8.02 -2.39 -0.02 1.94 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.36 15.45 3.80 -92.71 -0.35 15.10 16 41 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 42 H 0.05 1.66 7.70 -2.39 -0.02 1.64 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.05 1.28 6.70 -2.39 -0.02 1.27 16 46 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.05 1.71 6.64 -2.38 -0.02 1.70 16 48 H 0.09 2.76 5.76 -2.38 -0.01 2.75 16 Total: -1.00 -67.44 371.05 4.78 -62.66 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.55 Total: 30.35 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.72 Total: -3.95 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -3.26 Total: -113.28 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.08 Total: -2.09 kcal Total: -67.44 4.78 -62.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037861657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.392 kcal (2) G-P(sol) polarization free energy of solvation -67.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds