Wall clock time and date at job start Tue Mar 31 2020 16:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.59010 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42575 * 2 1 3 5 5 C 1.53045 * 109.30664 * 174.42001 * 4 2 1 6 6 C 1.53033 * 109.54110 * 298.63078 * 5 4 2 7 7 H 1.09002 * 109.50007 * 181.31621 * 6 5 4 8 8 N 1.46501 * 109.50074 * 301.41911 * 6 5 4 9 9 C 1.34774 * 120.00003 * 204.83667 * 8 6 5 10 10 O 1.21590 * 120.00288 * 359.97438 * 9 8 6 11 11 C 1.47583 * 119.99733 * 179.97438 * 9 8 6 12 12 C 1.40074 * 120.36287 * 359.71904 * 11 9 8 13 13 N 1.31165 * 121.12231 * 179.74340 * 12 11 9 14 14 C 1.33356 * 121.67867 * 0.54750 * 13 12 11 15 15 C 1.41852 * 133.17387 * 179.69456 * 14 13 12 16 16 C 1.34452 * 107.95915 * 180.02562 * 15 14 13 17 17 N 1.36543 * 109.71709 * 0.02562 * 16 15 14 18 18 H 0.97001 * 125.60056 * 180.02562 * 17 16 15 19 19 C 1.37854 * 108.80131 * 359.97438 * 17 16 15 20 20 C 1.38732 * 133.56383 * 179.97438 * 19 17 16 21 21 C 1.53192 * 109.30939 * 61.36837 * 6 5 4 22 22 N 1.46916 * 108.77871 * 305.36275 * 21 6 5 23 23 C 1.36934 * 120.63650 * 233.58702 * 22 21 6 24 24 H 1.08000 * 120.00496 * 149.29656 * 23 22 21 25 25 C 1.38822 * 119.99687 * 329.29495 * 23 22 21 26 26 N 1.31620 * 119.99894 * 345.75041 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 165.74981 * 25 23 22 28 28 H 1.48494 * 109.47391 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.46889 * 120.00367 * 27 25 23 30 30 H 1.48491 * 109.47167 * 239.99841 * 27 25 23 31 31 H 1.08995 * 109.47615 * 180.28480 * 1 2 3 32 32 H 1.09002 * 109.46767 * 300.28859 * 1 2 3 33 33 H 1.09005 * 109.46985 * 60.28273 * 1 2 3 34 34 H 1.08997 * 109.49858 * 294.36983 * 4 2 1 35 35 H 1.08996 * 109.49653 * 54.47301 * 4 2 1 36 36 H 1.09006 * 109.45233 * 178.61443 * 5 4 2 37 37 H 1.08997 * 109.45086 * 58.65229 * 5 4 2 38 38 H 0.96997 * 119.99821 * 24.83725 * 8 6 5 39 39 H 1.08005 * 119.43863 * 0.02562 * 12 11 9 40 40 H 1.08000 * 126.02181 * 0.06306 * 15 14 13 41 41 H 1.08002 * 125.14645 * 179.97438 * 16 15 14 42 42 H 1.07997 * 120.90853 * 0.02562 * 20 19 17 43 43 H 1.09003 * 109.58760 * 185.57527 * 21 6 5 44 44 H 1.09007 * 109.58738 * 65.15635 * 21 6 5 45 45 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 3.5675 -0.8495 1.1691 6 6 3.9568 -1.6658 -0.0654 7 1 5.0412 -1.7696 -0.1058 8 7 3.3404 -2.9926 0.0112 9 6 3.8951 -4.0321 -0.6430 10 8 4.9069 -3.8688 -1.2973 11 6 3.2744 -5.3688 -0.5653 12 6 2.1121 -5.5668 0.1909 13 7 1.5452 -6.7473 0.2662 14 6 2.0524 -7.8091 -0.3612 15 6 1.6565 -9.1688 -0.4432 16 6 2.5431 -9.8125 -1.2224 17 7 3.4992 -8.9375 -1.6523 18 1 4.2489 -9.1578 -2.2269 19 6 3.2232 -7.6892 -1.1364 20 6 3.8441 -6.4530 -1.2407 21 6 3.4650 -0.9454 -1.3248 22 7 2.0226 -0.6982 -1.1953 23 6 1.1537 -1.1101 -2.1703 24 1 0.1439 -1.3910 -1.9102 25 6 1.5710 -1.1665 -3.4931 26 7 2.6865 -0.5703 -3.8573 27 14 0.5494 -2.0887 -4.7561 28 1 -0.6497 -2.6658 -4.0970 29 1 0.1226 -1.1523 -5.8267 30 1 1.3626 -3.1806 -5.3488 31 1 -0.3634 -1.0276 0.0051 32 1 -0.3633 0.5183 0.8874 33 1 -0.3633 0.5095 -0.8926 34 1 1.7660 -0.1695 2.1367 35 1 1.6029 -1.7269 1.2892 36 1 3.9377 -1.3475 2.0653 37 1 4.0059 0.1460 1.0994 38 1 2.5331 -3.1228 0.5328 39 1 1.6726 -4.7324 0.7172 40 1 0.7943 -9.6092 0.0354 41 1 2.5055 -10.8630 -1.4702 42 1 4.7425 -6.3312 -1.8274 43 1 3.6518 -1.5692 -2.1990 44 1 3.9904 0.0037 -1.4316 45 1 2.9782 -0.6102 -4.7815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071608345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:49 Heat of formation + Delta-G solvation = 34.774098 kcal Electronic energy + Delta-G solvation = -28659.843177 eV Core-core repulsion = 24870.383553 eV Total energy + Delta-G solvation = -3789.459624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.75708 -41.07602 -39.35873 -38.42551 -35.81435 -34.50241 -33.97988 -32.43964 -31.73757 -31.16805 -30.26553 -27.83270 -26.77288 -25.02127 -24.64926 -23.84943 -22.22455 -21.82930 -21.79376 -20.39912 -19.62094 -18.32713 -18.21131 -17.65514 -17.06873 -17.04842 -16.35490 -16.12209 -15.85631 -15.60622 -15.45992 -15.15412 -14.79594 -14.54419 -14.43575 -14.25628 -13.97532 -13.93099 -13.65860 -13.46208 -13.44559 -12.99189 -12.86520 -12.62424 -12.52579 -12.40033 -12.11668 -12.04813 -11.55355 -11.43608 -11.32237 -11.14403 -11.02457 -10.54406 -10.40495 -9.99036 -9.54405 -9.11594 -8.53669 -7.81594 -5.27581 -0.46662 0.18553 1.36801 1.40484 1.48036 1.49760 1.90013 2.06800 2.38160 2.49249 2.91494 3.21539 3.34535 3.65070 3.66086 3.76446 3.84508 3.98883 4.05415 4.12985 4.19501 4.22468 4.43807 4.52357 4.60707 4.68073 4.77125 4.85304 4.89624 4.98680 5.00329 5.07926 5.12112 5.15577 5.30078 5.34065 5.36167 5.43159 5.60168 5.64245 5.69710 5.75813 5.76931 5.81518 6.46549 6.50626 6.63439 6.89810 7.20576 7.29856 7.94656 8.45379 9.23482 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.004395 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.888462 B = 6369.363464 C = 7251.768680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.015 0.985 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.068 0.932 8 N -0.683 5.683 9 C 0.562 3.438 10 O -0.588 6.588 11 C -0.192 4.192 12 C 0.135 3.865 13 N -0.477 5.477 14 C 0.089 3.911 15 C -0.231 4.231 16 C 0.118 3.882 17 N -0.569 5.569 18 H 0.438 0.562 19 C 0.010 3.990 20 C -0.021 4.021 21 C 0.173 3.827 22 N -0.595 5.595 23 C -0.232 4.232 24 H 0.075 0.925 25 C -0.052 4.052 26 N -0.936 5.936 27 Si 0.943 3.057 28 H -0.262 1.262 29 H -0.292 1.292 30 H -0.306 1.306 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.406 0.594 39 H 0.174 0.826 40 H 0.169 0.831 41 H 0.237 0.763 42 H 0.141 0.859 43 H 0.044 0.956 44 H -0.001 1.001 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -16.541 11.778 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.033 0.967 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.086 0.914 8 N -0.333 5.333 9 C 0.349 3.651 10 O -0.470 6.470 11 C -0.199 4.199 12 C -0.035 4.035 13 N -0.185 5.185 14 C -0.041 4.041 15 C -0.256 4.256 16 C -0.014 4.014 17 N -0.173 5.173 18 H 0.279 0.721 19 C -0.100 4.100 20 C -0.050 4.050 21 C 0.046 3.954 22 N -0.319 5.319 23 C -0.362 4.362 24 H 0.092 0.908 25 C -0.247 4.247 26 N -0.583 5.583 27 Si 0.774 3.226 28 H -0.186 1.186 29 H -0.219 1.219 30 H -0.234 1.234 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.244 0.756 39 H 0.191 0.809 40 H 0.186 0.814 41 H 0.253 0.747 42 H 0.159 0.841 43 H 0.063 0.937 44 H 0.017 0.983 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.050 -16.600 11.593 20.247 hybrid contribution 0.650 0.198 -2.122 2.228 sum 0.700 -16.401 9.470 18.952 Atomic orbital electron populations 1.21730 0.94780 1.01344 1.00783 1.20781 0.94118 0.93251 0.86972 0.96732 1.21976 0.94735 1.01095 0.98144 1.21675 0.97301 0.99968 0.95881 1.21552 0.96453 0.82044 0.97810 0.91370 1.45639 1.29545 1.07869 1.50242 1.18165 0.83496 0.84723 0.78708 1.90716 1.27401 1.85773 1.43135 1.20564 1.00279 0.93761 1.05301 1.22896 0.90699 0.94821 0.95075 1.67205 1.31542 0.98756 1.21009 1.19854 0.92993 0.95241 0.96058 1.20928 1.05593 0.89781 1.09314 1.22916 0.86735 0.97560 0.94161 1.41883 1.26509 1.05197 1.43681 0.72093 1.18961 0.99759 0.88281 1.02998 1.20609 0.98969 0.89028 0.96368 1.20835 0.84237 0.95273 0.95072 1.44254 1.02201 1.65567 1.19829 1.19418 0.95650 1.35037 0.86140 0.90785 1.25710 0.98849 1.01148 0.98987 1.70151 1.25566 1.46543 1.16030 0.85537 0.78865 0.78045 0.80184 1.18641 1.21911 1.23375 0.93033 0.90573 0.94725 0.88979 0.91861 0.89456 0.90645 0.75575 0.80899 0.81372 0.74717 0.84120 0.93706 0.98317 0.94895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 7.96 71.98 0.57 -3.81 16 2 C 0.15 5.80 3.50 44.98 0.16 5.95 16 3 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 4 C -0.12 -3.37 5.21 30.68 0.16 -3.21 16 5 C -0.11 -3.16 5.58 30.62 0.17 -2.99 16 6 C 0.13 4.87 2.81 45.07 0.13 4.99 16 7 H 0.07 2.72 7.58 -2.39 -0.02 2.71 16 8 N -0.68 -24.61 4.87 -445.29 -2.17 -26.78 16 9 C 0.56 22.54 7.74 86.71 0.67 23.21 16 10 O -0.59 -28.04 16.06 -4.00 -0.06 -28.10 16 11 C -0.19 -6.67 5.89 -19.97 -0.12 -6.79 16 12 C 0.14 4.23 10.69 85.24 0.91 5.14 16 13 N -0.48 -15.10 10.40 -187.79 -1.95 -17.06 16 14 C 0.09 2.52 7.32 40.47 0.30 2.82 16 15 C -0.23 -4.41 10.84 22.30 0.24 -4.16 16 16 C 0.12 1.35 11.82 83.09 0.98 2.33 16 17 N -0.57 -8.90 6.14 -187.64 -1.15 -10.06 16 18 H 0.44 3.98 8.96 -92.71 -0.83 3.15 16 19 C 0.01 0.26 7.27 38.97 0.28 0.54 16 20 C -0.02 -0.66 9.72 22.78 0.22 -0.44 16 21 C 0.17 8.58 4.87 86.36 0.42 9.00 16 22 N -0.59 -28.55 2.90 -675.22 -1.96 -30.51 16 23 C -0.23 -12.46 8.55 84.04 0.72 -11.74 16 24 H 0.07 3.84 6.26 -2.91 -0.02 3.83 16 25 C -0.05 -3.01 4.96 84.86 0.42 -2.59 16 26 N -0.94 -58.29 11.22 21.65 0.24 -58.05 16 27 Si 0.94 47.48 29.58 68.60 2.03 49.50 16 28 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 29 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 30 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 31 H 0.05 1.75 7.44 -2.39 -0.02 1.73 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.03 1.34 7.63 -2.38 -0.02 1.32 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.70 6.40 -2.39 -0.02 1.68 16 36 H 0.09 1.99 8.14 -2.38 -0.02 1.98 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.41 12.53 4.80 -92.71 -0.45 12.09 16 39 H 0.17 4.59 6.39 -2.91 -0.02 4.57 16 40 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.24 -0.02 8.06 -2.91 -0.02 -0.05 16 42 H 0.14 4.34 7.72 -2.91 -0.02 4.32 16 43 H 0.04 2.68 6.18 -2.39 -0.01 2.67 16 44 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 45 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -81.38 359.85 0.98 -80.40 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -0.23 Total: 22.42 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.24 Total: 18.24 kcal Atomic # 7 Polarization: -135.47 SS G_CDS: -6.99 Total: -142.46 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.06 Total: -28.10 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -81.38 0.98 -80.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071608345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.173 kcal (2) G-P(sol) polarization free energy of solvation -81.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds