Wall clock time and date at job start Tue Mar 31 2020 16:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58298 * 2 1 4 4 C 1.53195 * 109.58612 * 120.42455 * 2 1 3 5 5 C 1.53048 * 109.30766 * 174.42225 * 4 2 1 6 6 C 1.53037 * 109.54013 * 298.63414 * 5 4 2 7 7 H 1.08998 * 109.50051 * 181.35464 * 6 5 4 8 8 N 1.46506 * 109.49550 * 301.41704 * 6 5 4 9 9 C 1.34782 * 119.99754 * 204.99807 * 8 6 5 10 10 O 1.21654 * 119.99732 * 354.95772 * 9 8 6 11 11 C 1.47044 * 120.00033 * 174.95818 * 9 8 6 12 12 C 1.37600 * 119.93253 * 2.31487 * 11 9 8 13 13 C 1.39947 * 120.01577 * 179.73338 * 12 11 9 14 14 C 1.36207 * 119.91546 * 0.56285 * 13 12 11 15 15 C 1.40919 * 119.80431 * 359.70840 * 14 13 12 16 16 N 1.32573 * 132.18978 * 180.02562 * 15 14 13 17 17 C 1.33241 * 109.13915 * 179.97438 * 16 15 14 18 18 C 1.35450 * 108.57415 * 0.02562 * 17 16 15 19 19 N 1.36247 * 107.18000 * 359.97438 * 18 17 16 20 20 C 1.52766 * 109.38374 * 61.24033 * 6 5 4 21 21 N 1.46921 * 109.00781 * 305.59047 * 20 6 5 22 22 C 1.36935 * 120.62841 * 233.58083 * 21 20 6 23 23 H 1.08000 * 119.99846 * 146.41823 * 22 21 20 24 24 C 1.38812 * 120.00000 * 326.41710 * 22 21 20 25 25 N 1.31613 * 120.00212 * 336.87593 * 24 22 21 26 26 Si 1.86807 * 119.99896 * 156.87580 * 24 22 21 27 27 H 1.48489 * 109.47037 * 90.00004 * 26 24 22 28 28 H 1.48499 * 109.46759 * 330.00041 * 26 24 22 29 29 H 1.48493 * 109.46938 * 210.00396 * 26 24 22 30 30 H 1.09002 * 109.46698 * 180.28547 * 1 2 3 31 31 H 1.09002 * 109.47163 * 300.28152 * 1 2 3 32 32 H 1.08993 * 109.47029 * 60.28891 * 1 2 3 33 33 H 1.08991 * 109.49743 * 294.37187 * 4 2 1 34 34 H 1.08995 * 109.49605 * 54.44183 * 4 2 1 35 35 H 1.09001 * 109.46177 * 58.65745 * 5 4 2 36 36 H 1.09005 * 109.45456 * 178.61630 * 5 4 2 37 37 H 0.96998 * 120.00341 * 24.99955 * 8 6 5 38 38 H 1.08006 * 119.99306 * 0.02562 * 12 11 9 39 39 H 1.08001 * 120.03556 * 180.27361 * 13 12 11 40 40 H 1.08006 * 120.09750 * 179.73553 * 14 13 12 41 41 H 1.08000 * 125.71100 * 179.97438 * 17 16 15 42 42 H 1.08002 * 126.40592 * 179.97438 * 18 17 16 43 43 H 1.08994 * 109.50738 * 185.70342 * 20 6 5 44 44 H 1.09001 * 109.42849 * 65.42513 * 20 6 5 45 45 H 0.97001 * 120.00109 * 354.22099 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7309 1.2446 5 6 3.5676 -0.8494 1.1690 6 6 3.9570 -1.6656 -0.0656 7 1 5.0412 -1.7699 -0.1056 8 7 3.3406 -2.9924 0.0112 9 6 3.8971 -4.0327 -0.6405 10 8 4.8572 -3.8528 -1.3657 11 6 3.3439 -5.3850 -0.4749 12 6 2.2290 -5.5796 0.3078 13 6 1.6977 -6.8651 0.4620 14 6 2.2923 -7.9243 -0.1542 15 6 3.4372 -7.7195 -0.9499 16 7 4.1973 -8.5521 -1.6474 17 6 5.1735 -7.8628 -2.2366 18 6 5.0372 -6.5556 -1.9090 19 7 3.9462 -6.4554 -1.0990 20 6 3.4644 -0.9503 -1.3223 21 7 2.0226 -0.6981 -1.1953 22 6 1.1537 -1.1109 -2.1699 23 1 0.1573 -1.4320 -1.9042 24 6 1.5534 -1.1165 -3.4992 25 7 2.5376 -0.3367 -3.8937 26 14 0.6946 -2.2308 -4.7281 27 1 -0.4521 -1.5081 -5.3344 28 1 0.2016 -3.4470 -4.0331 29 1 1.6516 -2.6233 -5.7935 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3633 0.5093 -0.8925 33 1 1.7661 -0.1694 2.1366 34 1 1.6026 -1.7266 1.2895 35 1 4.0062 0.1461 1.0994 36 1 3.9379 -1.3473 2.0652 37 1 2.5319 -3.1223 0.5309 38 1 1.7611 -4.7395 0.7994 39 1 0.8201 -7.0176 1.0727 40 1 1.8872 -8.9183 -0.0336 41 1 5.9448 -8.2772 -2.8689 42 1 5.6741 -5.7446 -2.2299 43 1 3.6504 -1.5771 -2.1944 44 1 3.9928 -0.0031 -1.4311 45 1 2.9276 0.3019 -3.2766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071679289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:17 Heat of formation + Delta-G solvation = 58.482086 kcal Electronic energy + Delta-G solvation = -29157.508621 eV Core-core repulsion = 25369.077053 eV Total energy + Delta-G solvation = -3788.431568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.89781 -41.26884 -39.43826 -38.15079 -36.11328 -34.75846 -34.56643 -32.84442 -31.65196 -31.03398 -29.81696 -27.90034 -26.78181 -25.78513 -23.91619 -23.72315 -23.40180 -22.36318 -22.00064 -20.55376 -19.04365 -18.91764 -18.49427 -17.71214 -17.22242 -17.04615 -16.64716 -16.31328 -15.96824 -15.85857 -15.56535 -15.22037 -15.05443 -15.01650 -14.81503 -14.55985 -14.04359 -13.60429 -13.35070 -13.31759 -13.21076 -13.04193 -12.80482 -12.66301 -12.58908 -12.33890 -12.09713 -12.08766 -11.84455 -11.64267 -11.38673 -11.38026 -11.18083 -11.05510 -10.46243 -10.23735 -9.94119 -8.95683 -8.81092 -8.13624 -5.39119 -0.77965 0.24179 1.29574 1.41527 1.46147 1.55265 1.67837 1.96557 2.09940 2.50072 2.59619 3.19396 3.25566 3.36229 3.49062 3.52530 3.76465 3.87670 3.98572 4.04657 4.09444 4.32557 4.38345 4.40216 4.45642 4.53297 4.60109 4.68092 4.78075 4.85868 4.92782 4.94152 4.96760 5.03744 5.05678 5.15010 5.21722 5.23178 5.38781 5.45240 5.51417 5.55900 5.58462 5.87303 5.98709 6.37126 6.44644 6.71589 7.01209 7.12718 7.82537 8.30692 9.06433 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.004905 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.247386 B = 5707.524884 C = 6527.992983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.154 3.846 3 H 0.011 0.989 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.136 3.864 7 H 0.071 0.929 8 N -0.672 5.672 9 C 0.552 3.448 10 O -0.576 6.576 11 C -0.001 4.001 12 C -0.062 4.062 13 C -0.098 4.098 14 C -0.054 4.054 15 C 0.185 3.815 16 N -0.513 5.513 17 C 0.024 3.976 18 C -0.098 4.098 19 N -0.344 5.344 20 C 0.153 3.847 21 N -0.600 5.600 22 C -0.323 4.323 23 H 0.062 0.938 24 C -0.077 4.077 25 N -0.952 5.952 26 Si 1.094 2.906 27 H -0.278 1.278 28 H -0.276 1.276 29 H -0.308 1.308 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.411 0.589 38 H 0.183 0.817 39 H 0.203 0.797 40 H 0.186 0.814 41 H 0.209 0.791 42 H 0.177 0.823 43 H 0.029 0.971 44 H 0.004 0.996 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -9.938 17.221 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 H 0.029 0.971 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.030 3.970 7 H 0.089 0.911 8 N -0.324 5.324 9 C 0.339 3.661 10 O -0.458 6.458 11 C -0.107 4.107 12 C -0.084 4.084 13 C -0.121 4.121 14 C -0.074 4.074 15 C -0.057 4.057 16 N -0.234 5.234 17 C -0.128 4.128 18 C -0.231 4.231 19 N -0.016 5.016 20 C 0.026 3.974 21 N -0.325 5.325 22 C -0.454 4.454 23 H 0.080 0.920 24 C -0.274 4.274 25 N -0.594 5.594 26 Si 0.921 3.079 27 H -0.204 1.204 28 H -0.202 1.202 29 H -0.235 1.235 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.251 0.749 38 H 0.200 0.800 39 H 0.220 0.780 40 H 0.203 0.797 41 H 0.226 0.774 42 H 0.194 0.806 43 H 0.048 0.952 44 H 0.022 0.978 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.702 -11.089 15.093 18.923 hybrid contribution 0.535 1.931 0.559 2.081 sum -2.167 -9.157 15.653 18.264 Atomic orbital electron populations 1.21685 0.94629 1.01435 1.00485 1.20808 0.94293 0.93036 0.86983 0.97081 1.21966 0.94514 1.01324 0.98001 1.21696 0.97457 0.99969 0.95685 1.21394 0.96495 0.81674 0.97472 0.91076 1.45493 1.29381 1.07341 1.50188 1.17865 0.83372 0.84661 0.80202 1.90778 1.30154 1.85888 1.38941 1.20286 0.99783 0.87060 1.03525 1.21895 0.90962 1.01307 0.94238 1.21536 1.01490 0.89290 0.99789 1.20989 0.90020 1.03318 0.93036 1.21790 1.00380 0.79372 1.04113 1.70618 1.07390 1.31345 1.14005 1.23010 0.99184 0.89138 1.01500 1.23143 0.95092 1.01249 1.03660 1.42652 1.20082 1.07987 1.30888 1.20939 0.85387 0.95219 0.95854 1.44283 1.01654 1.65937 1.20615 1.20006 0.98000 1.39735 0.87616 0.92016 1.26794 1.00674 1.01235 0.98690 1.70847 1.29580 1.21320 1.37677 0.83137 0.74836 0.75426 0.74456 1.20401 1.20175 1.23489 0.92770 0.90565 0.95288 0.88732 0.91354 0.90555 0.88800 0.74920 0.80021 0.77977 0.79666 0.77386 0.80618 0.95227 0.97845 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 7.98 71.98 0.57 -3.38 16 2 C 0.15 5.33 3.50 44.98 0.16 5.48 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.12 -2.84 5.21 30.68 0.16 -2.68 16 5 C -0.11 -2.70 5.59 30.62 0.17 -2.53 16 6 C 0.14 4.64 2.77 44.92 0.12 4.76 16 7 H 0.07 2.57 7.65 -2.39 -0.02 2.55 16 8 N -0.67 -21.06 4.85 -446.45 -2.16 -23.23 16 9 C 0.55 20.32 7.71 86.55 0.67 20.98 16 10 O -0.58 -26.18 14.27 -4.20 -0.06 -26.24 16 11 C 0.00 -0.02 6.78 40.37 0.27 0.26 16 12 C -0.06 -1.25 9.53 22.53 0.21 -1.04 16 13 C -0.10 -1.42 10.04 22.21 0.22 -1.20 16 14 C -0.05 -1.05 10.09 22.45 0.23 -0.82 16 15 C 0.18 5.55 7.80 134.10 1.05 6.60 16 16 N -0.51 -16.57 11.31 -194.28 -2.20 -18.76 16 17 C 0.02 0.73 11.83 83.83 0.99 1.72 16 18 C -0.10 -3.43 10.79 83.36 0.90 -2.53 16 19 N -0.34 -11.64 2.97 -339.79 -1.01 -12.65 16 20 C 0.15 7.07 4.31 86.22 0.37 7.44 16 21 N -0.60 -26.96 2.70 -676.06 -1.82 -28.78 16 22 C -0.32 -16.74 8.35 84.03 0.70 -16.04 16 23 H 0.06 3.10 6.42 -2.91 -0.02 3.09 16 24 C -0.08 -4.41 4.70 84.86 0.40 -4.01 16 25 N -0.95 -59.79 12.62 21.65 0.27 -59.51 16 26 Si 1.09 53.21 29.98 68.60 2.06 55.27 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 29 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 30 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.08 7.66 -2.39 -0.02 1.06 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.47 6.40 -2.39 -0.02 1.46 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.41 10.11 4.76 -92.71 -0.44 9.67 16 38 H 0.18 2.44 6.32 -2.91 -0.02 2.42 16 39 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.21 4.77 8.06 -2.91 -0.02 4.75 16 42 H 0.18 6.56 6.66 -2.91 -0.02 6.54 16 43 H 0.03 1.68 6.62 -2.39 -0.02 1.66 16 44 H 0.00 0.18 7.85 -2.39 -0.02 0.16 16 45 H 0.25 16.10 6.82 -92.71 -0.63 15.47 16 Total: -1.00 -81.70 356.46 3.00 -78.70 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.72 Total: 22.20 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 7.20 Total: 13.01 kcal Atomic # 7 Polarization: -136.02 SS G_CDS: -6.92 Total: -142.93 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 53.21 SS G_CDS: 2.06 Total: 55.27 kcal Total: -81.70 3.00 -78.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071679289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.177 kcal (2) G-P(sol) polarization free energy of solvation -81.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds