Wall clock time and date at job start Tue Mar 31 2020 16:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.58131 * 2 1 4 4 C 1.53189 * 109.58915 * 120.27869 * 2 1 3 5 5 C 1.53041 * 109.31588 * 174.56645 * 4 2 1 6 6 C 1.53043 * 109.53797 * 298.64261 * 5 4 2 7 7 H 1.09011 * 109.49300 * 301.40946 * 6 5 4 8 8 N 1.46499 * 109.49842 * 181.31363 * 6 5 4 9 9 C 1.34775 * 119.99981 * 154.99266 * 8 6 5 10 10 O 1.21533 * 120.00026 * 0.02562 * 9 8 6 11 11 C 1.48060 * 119.99946 * 179.97438 * 9 8 6 12 12 C 1.39765 * 119.46892 * 179.73294 * 11 9 8 13 13 C 1.38136 * 119.56973 * 179.72896 * 12 11 9 14 14 C 1.39246 * 118.38296 * 0.53529 * 13 12 11 15 15 N 1.37353 * 133.61750 * 179.72921 * 14 13 12 16 16 H 0.96996 * 125.05199 * 0.02562 * 15 14 13 17 17 C 1.36714 * 109.89530 * 179.97438 * 15 14 13 18 18 C 1.34281 * 110.02415 * 0.02562 * 17 15 14 19 19 C 1.41193 * 119.09834 * 359.72638 * 14 13 12 20 20 N 1.32443 * 119.46998 * 0.02562 * 11 9 8 21 21 C 1.53187 * 109.31642 * 61.35900 * 6 5 4 22 22 N 1.46927 * 109.70570 * 239.64435 * 2 1 3 23 23 C 1.36933 * 120.63096 * 6.55438 * 22 2 1 24 24 H 1.08005 * 120.00053 * 330.19779 * 23 22 2 25 25 C 1.38813 * 120.00328 * 150.19536 * 23 22 2 26 26 N 1.31615 * 119.99584 * 344.46399 * 25 23 22 27 27 Si 1.86797 * 120.00188 * 164.46918 * 25 23 22 28 28 H 1.48495 * 109.47202 * 59.99684 * 27 25 23 29 29 H 1.48499 * 109.46852 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.46916 * 299.99854 * 27 25 23 31 31 H 1.08996 * 109.47032 * 299.99570 * 1 2 3 32 32 H 1.08999 * 109.47159 * 60.00426 * 1 2 3 33 33 H 1.08998 * 109.46780 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.50211 * 294.52492 * 4 2 1 35 35 H 1.09009 * 109.49457 * 54.61592 * 4 2 1 36 36 H 1.09001 * 109.45628 * 58.65491 * 5 4 2 37 37 H 1.08998 * 109.46242 * 178.63191 * 5 4 2 38 38 H 0.97000 * 120.00036 * 335.00280 * 8 6 5 39 39 H 1.08003 * 120.21792 * 0.02562 * 12 11 9 40 40 H 1.08003 * 120.81149 * 180.28636 * 13 12 11 41 41 H 1.08009 * 124.98674 * 179.97438 * 17 15 14 42 42 H 1.08014 * 126.48241 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.58477 * 65.15092 * 21 6 5 44 44 H 1.08995 * 109.58752 * 185.43917 * 21 6 5 45 45 H 0.97000 * 119.99726 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2463 5 6 3.5679 -0.8432 1.1730 6 6 3.9605 -1.6606 -0.0599 7 1 3.5038 -2.6487 -0.0017 8 7 5.4182 -1.7972 -0.1122 9 6 5.9745 -2.8392 -0.7611 10 8 5.2669 -3.6653 -1.3034 11 6 7.4477 -2.9770 -0.8144 12 6 8.0127 -4.0649 -1.4857 13 6 9.3870 -4.1925 -1.5415 14 6 10.1676 -3.2275 -0.9102 15 7 11.5219 -3.0501 -0.7659 16 1 12.2025 -3.6403 -1.1255 17 6 11.7682 -1.9173 -0.0412 18 6 10.6102 -1.3316 0.3042 19 6 9.5310 -2.1570 -0.2450 20 7 8.2088 -2.0704 -0.2203 21 6 3.4686 -0.9435 -1.3210 22 7 2.0254 -0.6990 -1.1936 23 6 1.1587 -1.1144 -2.1689 24 1 0.1446 -1.3828 -1.9117 25 6 1.5832 -1.1905 -3.4883 26 7 2.6933 -0.5878 -3.8582 27 14 0.5791 -2.1482 -4.7389 28 1 -0.7824 -1.5629 -4.8333 29 1 1.2424 -2.0766 -6.0656 30 1 0.4794 -3.5669 -4.3117 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7638 -0.1654 2.1372 35 1 1.6050 -1.7246 1.2922 36 1 4.0045 0.1530 1.1022 37 1 3.9382 -1.3391 2.0702 38 1 5.9829 -1.1378 0.3204 39 1 7.3790 -4.7986 -1.9618 40 1 9.8450 -5.0227 -2.0587 41 1 12.7499 -1.5481 0.2165 42 1 10.4958 -0.4234 0.8776 43 1 3.9920 0.0066 -1.4287 44 1 3.6600 -1.5672 -2.1941 45 1 2.9902 -0.6413 -4.7801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071680356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:15 Heat of formation + Delta-G solvation = 56.645767 kcal Electronic energy + Delta-G solvation = -27796.993748 eV Core-core repulsion = 24008.482551 eV Total energy + Delta-G solvation = -3788.511197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72710 -39.52398 -37.94100 -37.06813 -34.33313 -33.02188 -32.67726 -30.95871 -29.98657 -29.72448 -29.48066 -26.06397 -25.04485 -24.24586 -22.87030 -22.14559 -21.22468 -20.65051 -19.96437 -19.20758 -18.42235 -17.44457 -16.89209 -16.31060 -15.52144 -15.26449 -15.02438 -14.73993 -14.33098 -14.17371 -13.76197 -13.68900 -13.53907 -13.28329 -13.25937 -12.92514 -12.81623 -12.63600 -12.32068 -12.26755 -11.74525 -11.35231 -11.03119 -10.81110 -10.62304 -10.53943 -10.42485 -10.32259 -10.18138 -9.94812 -9.86696 -9.59879 -9.34559 -9.22674 -8.62057 -8.39665 -8.33655 -8.29533 -6.50695 -5.64783 -3.09562 0.75057 0.95410 2.37272 2.70293 3.11691 3.48007 3.54469 3.55486 3.56874 3.98268 4.08786 4.43263 4.61293 4.74198 4.80504 4.89150 5.11880 5.40125 5.45794 5.47889 5.55609 5.59643 5.67471 5.71774 5.80279 5.96144 6.07347 6.13874 6.23224 6.25077 6.37092 6.41037 6.48637 6.54277 6.61529 6.68958 6.73218 6.86195 7.07454 7.08119 7.13586 7.21992 7.43090 7.75221 7.85004 7.94783 8.14252 8.59631 8.73983 9.33871 9.98336 10.54476 11.43222 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.003216 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.533945 B = 8703.247114 C = 9859.447831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.115 3.885 7 H 0.083 0.917 8 N -0.699 5.699 9 C 0.569 3.431 10 O -0.529 6.529 11 C 0.084 3.916 12 C -0.096 4.096 13 C -0.095 4.095 14 C 0.060 3.940 15 N -0.591 5.591 16 H 0.418 0.582 17 C 0.063 3.937 18 C -0.183 4.183 19 C 0.088 3.912 20 N -0.419 5.419 21 C 0.169 3.831 22 N -0.583 5.583 23 C -0.253 4.253 24 H 0.069 0.931 25 C 0.007 3.993 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.403 0.597 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.179 0.821 42 H 0.157 0.843 43 H 0.018 0.982 44 H 0.093 0.907 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.912 -3.382 10.005 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.010 3.990 7 H 0.101 0.899 8 N -0.349 5.349 9 C 0.352 3.648 10 O -0.404 6.404 11 C -0.064 4.064 12 C -0.118 4.118 13 C -0.123 4.123 14 C -0.050 4.050 15 N -0.195 5.195 16 H 0.255 0.745 17 C -0.065 4.065 18 C -0.208 4.208 19 C -0.048 4.048 20 N -0.130 5.130 21 C 0.042 3.958 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.087 0.913 25 C -0.192 4.192 26 N -0.543 5.543 27 Si 0.730 3.270 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.238 0.762 39 H 0.172 0.828 40 H 0.155 0.845 41 H 0.196 0.804 42 H 0.174 0.826 43 H 0.036 0.964 44 H 0.111 0.889 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 18.141 -3.270 9.858 20.904 hybrid contribution 0.782 -1.069 -1.156 1.758 sum 18.923 -4.339 8.702 21.275 Atomic orbital electron populations 1.21795 0.96051 1.01364 1.00136 1.20487 0.92988 0.93592 0.87109 0.95773 1.22045 0.94344 1.01281 0.98868 1.21675 0.97265 0.99770 0.96722 1.22037 0.77651 1.00951 0.98377 0.89925 1.45912 1.08519 1.26188 1.54241 1.17716 0.85482 0.82212 0.79364 1.90821 1.61774 1.42497 1.45335 1.21162 0.94214 0.92719 0.98318 1.21806 0.94063 0.98287 0.97666 1.20424 0.92648 0.98391 1.00878 1.19264 0.84679 0.99097 1.01954 1.41586 1.05176 1.24179 1.48551 0.74457 1.21927 0.99924 0.87860 0.96745 1.21606 0.88641 1.02574 1.08002 1.20047 0.89513 0.95023 1.00245 1.66922 1.04639 1.25771 1.15704 1.21059 0.83488 0.96970 0.94243 1.44006 1.02591 1.64769 1.19273 1.19081 0.95106 1.38091 0.85996 0.91338 1.25083 0.97805 0.99307 0.97035 1.70002 1.24054 1.43508 1.16770 0.86410 0.79387 0.80497 0.80705 1.21003 1.21742 1.20924 0.94378 0.92041 0.92817 0.92714 0.92089 0.92185 0.93024 0.76243 0.82842 0.84463 0.80408 0.82563 0.96413 0.88913 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.96 37.16 0.30 -2.33 16 2 C 0.16 3.50 3.49 -67.60 -0.24 3.26 16 3 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.23 5.37 -26.61 -0.14 -2.38 16 5 C -0.12 -2.02 5.35 -26.69 -0.14 -2.16 16 6 C 0.12 2.39 2.60 -67.81 -0.18 2.21 16 7 H 0.08 1.90 7.58 -51.92 -0.39 1.51 16 8 N -0.70 -13.10 5.07 -54.56 -0.28 -13.38 16 9 C 0.57 11.23 7.77 -12.23 -0.10 11.14 16 10 O -0.53 -12.23 15.96 5.34 0.09 -12.14 16 11 C 0.08 1.40 6.74 -83.00 -0.56 0.84 16 12 C -0.10 -1.36 9.60 -39.05 -0.37 -1.73 16 13 C -0.09 -1.04 10.18 -39.24 -0.40 -1.44 16 14 C 0.06 0.67 7.29 -83.90 -0.61 0.06 16 15 N -0.59 -4.19 6.05 -10.58 -0.06 -4.26 16 16 H 0.42 1.52 8.96 -40.82 -0.37 1.15 16 17 C 0.06 0.41 11.81 -16.77 -0.20 0.21 16 18 C -0.18 -1.77 11.08 -37.63 -0.42 -2.19 16 19 C 0.09 1.17 7.52 -83.10 -0.62 0.54 16 20 N -0.42 -6.58 9.57 -6.43 -0.06 -6.64 16 21 C 0.17 4.29 4.86 -3.71 -0.02 4.27 16 22 N -0.58 -14.98 2.99 -164.77 -0.49 -15.47 16 23 C -0.25 -7.10 8.58 -15.06 -0.13 -7.22 16 24 H 0.07 1.86 6.24 -52.48 -0.33 1.53 16 25 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 26 N -0.90 -27.33 11.23 55.49 0.62 -26.71 16 27 Si 0.90 22.81 29.58 -169.99 -5.03 17.78 16 28 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 33 H 0.05 1.05 7.42 -51.93 -0.39 0.67 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 6.70 7.92 -40.82 -0.32 6.38 16 39 H 0.15 2.10 7.61 -52.48 -0.40 1.70 16 40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.18 0.40 8.06 -52.48 -0.42 -0.02 16 42 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 2.74 6.15 -51.93 -0.32 2.43 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -35.41 365.93 -9.89 -45.31 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.28 Total: 6.81 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -3.92 Total: 3.19 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -0.27 Total: -66.46 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.41 -9.89 -45.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071680356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.951 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds