Wall clock time and date at job start Tue Mar 31 2020 16:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.58131 * 2 1 4 4 C 1.53189 * 109.58915 * 120.27869 * 2 1 3 5 5 C 1.53041 * 109.31588 * 174.56645 * 4 2 1 6 6 C 1.53043 * 109.53797 * 298.64261 * 5 4 2 7 7 H 1.09011 * 109.49300 * 301.40946 * 6 5 4 8 8 N 1.46499 * 109.49842 * 181.31363 * 6 5 4 9 9 C 1.34775 * 119.99981 * 154.99266 * 8 6 5 10 10 O 1.21533 * 120.00026 * 0.02562 * 9 8 6 11 11 C 1.48060 * 119.99946 * 179.97438 * 9 8 6 12 12 C 1.39765 * 119.46892 * 179.73294 * 11 9 8 13 13 C 1.38136 * 119.56973 * 179.72896 * 12 11 9 14 14 C 1.39246 * 118.38296 * 0.53529 * 13 12 11 15 15 N 1.37353 * 133.61750 * 179.72921 * 14 13 12 16 16 H 0.96996 * 125.05199 * 0.02562 * 15 14 13 17 17 C 1.36714 * 109.89530 * 179.97438 * 15 14 13 18 18 C 1.34281 * 110.02415 * 0.02562 * 17 15 14 19 19 C 1.41193 * 119.09834 * 359.72638 * 14 13 12 20 20 N 1.32443 * 119.46998 * 0.02562 * 11 9 8 21 21 C 1.53187 * 109.31642 * 61.35900 * 6 5 4 22 22 N 1.46927 * 109.70570 * 239.64435 * 2 1 3 23 23 C 1.36933 * 120.63096 * 6.55438 * 22 2 1 24 24 H 1.08005 * 120.00053 * 330.19779 * 23 22 2 25 25 C 1.38813 * 120.00328 * 150.19536 * 23 22 2 26 26 N 1.31615 * 119.99584 * 344.46399 * 25 23 22 27 27 Si 1.86797 * 120.00188 * 164.46918 * 25 23 22 28 28 H 1.48495 * 109.47202 * 59.99684 * 27 25 23 29 29 H 1.48499 * 109.46852 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.46916 * 299.99854 * 27 25 23 31 31 H 1.08996 * 109.47032 * 299.99570 * 1 2 3 32 32 H 1.08999 * 109.47159 * 60.00426 * 1 2 3 33 33 H 1.08998 * 109.46780 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.50211 * 294.52492 * 4 2 1 35 35 H 1.09009 * 109.49457 * 54.61592 * 4 2 1 36 36 H 1.09001 * 109.45628 * 58.65491 * 5 4 2 37 37 H 1.08998 * 109.46242 * 178.63191 * 5 4 2 38 38 H 0.97000 * 120.00036 * 335.00280 * 8 6 5 39 39 H 1.08003 * 120.21792 * 0.02562 * 12 11 9 40 40 H 1.08003 * 120.81149 * 180.28636 * 13 12 11 41 41 H 1.08009 * 124.98674 * 179.97438 * 17 15 14 42 42 H 1.08014 * 126.48241 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.58477 * 65.15092 * 21 6 5 44 44 H 1.08995 * 109.58752 * 185.43917 * 21 6 5 45 45 H 0.97000 * 119.99726 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2463 5 6 3.5679 -0.8432 1.1730 6 6 3.9605 -1.6606 -0.0599 7 1 3.5038 -2.6487 -0.0017 8 7 5.4182 -1.7972 -0.1122 9 6 5.9745 -2.8392 -0.7611 10 8 5.2669 -3.6653 -1.3034 11 6 7.4477 -2.9770 -0.8144 12 6 8.0127 -4.0649 -1.4857 13 6 9.3870 -4.1925 -1.5415 14 6 10.1676 -3.2275 -0.9102 15 7 11.5219 -3.0501 -0.7659 16 1 12.2025 -3.6403 -1.1255 17 6 11.7682 -1.9173 -0.0412 18 6 10.6102 -1.3316 0.3042 19 6 9.5310 -2.1570 -0.2450 20 7 8.2088 -2.0704 -0.2203 21 6 3.4686 -0.9435 -1.3210 22 7 2.0254 -0.6990 -1.1936 23 6 1.1587 -1.1144 -2.1689 24 1 0.1446 -1.3828 -1.9117 25 6 1.5832 -1.1905 -3.4883 26 7 2.6933 -0.5878 -3.8582 27 14 0.5791 -2.1482 -4.7389 28 1 -0.7824 -1.5629 -4.8333 29 1 1.2424 -2.0766 -6.0656 30 1 0.4794 -3.5669 -4.3117 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7638 -0.1654 2.1372 35 1 1.6050 -1.7246 1.2922 36 1 4.0045 0.1530 1.1022 37 1 3.9382 -1.3391 2.0702 38 1 5.9829 -1.1378 0.3204 39 1 7.3790 -4.7986 -1.9618 40 1 9.8450 -5.0227 -2.0587 41 1 12.7499 -1.5481 0.2165 42 1 10.4958 -0.4234 0.8776 43 1 3.9920 0.0066 -1.4287 44 1 3.6600 -1.5672 -2.1941 45 1 2.9902 -0.6413 -4.7801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071680356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:14 Heat of formation + Delta-G solvation = 30.809635 kcal Electronic energy + Delta-G solvation = -27798.114086 eV Core-core repulsion = 24008.482551 eV Total energy + Delta-G solvation = -3789.631536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57846 -41.00202 -39.42263 -38.37046 -36.04587 -34.66842 -33.91619 -32.40920 -31.77241 -30.91297 -30.43184 -27.78832 -26.87307 -25.43347 -24.08849 -23.74706 -22.40570 -21.77677 -21.48163 -20.92743 -19.25613 -18.76558 -18.32622 -17.81006 -17.24858 -16.71871 -16.30142 -15.91879 -15.76947 -15.68735 -15.43985 -15.23830 -14.97748 -14.59741 -14.40390 -14.13468 -13.99383 -13.88044 -13.66321 -13.50465 -13.37561 -13.05648 -12.75400 -12.68643 -12.55616 -12.29782 -12.12460 -12.00274 -11.67563 -11.47946 -11.43567 -11.22397 -11.11822 -10.52609 -10.49221 -10.11649 -9.49386 -9.10229 -8.61362 -7.83761 -5.30950 -0.28046 0.00710 1.41329 1.47561 1.51816 1.66110 1.79414 2.01279 2.15984 2.52023 2.91318 2.99372 3.32528 3.60013 3.67141 3.80629 3.95136 3.99450 4.00448 4.09079 4.26261 4.39207 4.45421 4.53843 4.60242 4.67359 4.71642 4.81024 4.89653 4.95922 4.99044 5.01571 5.06984 5.18593 5.29935 5.32145 5.35858 5.41666 5.48192 5.56150 5.61480 5.71221 5.78621 5.84886 6.40651 6.49280 6.57797 6.84603 7.15445 7.24082 7.90207 8.41162 9.21644 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.003216 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.533945 B = 8703.247114 C = 9859.447831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.020 0.980 4 C -0.116 4.116 5 C -0.108 4.108 6 C 0.129 3.871 7 H 0.056 0.944 8 N -0.692 5.692 9 C 0.563 3.437 10 O -0.576 6.576 11 C 0.052 3.948 12 C -0.117 4.117 13 C -0.078 4.078 14 C 0.060 3.940 15 N -0.571 5.571 16 H 0.440 0.560 17 C 0.105 3.895 18 C -0.219 4.219 19 C 0.057 3.943 20 N -0.440 5.440 21 C 0.184 3.816 22 N -0.602 5.602 23 C -0.253 4.253 24 H 0.076 0.924 25 C -0.055 4.055 26 N -0.935 5.935 27 Si 0.960 3.040 28 H -0.267 1.267 29 H -0.297 1.297 30 H -0.284 1.284 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.414 0.586 39 H 0.146 0.854 40 H 0.178 0.822 41 H 0.234 0.766 42 H 0.166 0.834 43 H -0.006 1.006 44 H 0.041 0.959 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.594 -3.375 12.208 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.155 4.155 5 C -0.146 4.146 6 C 0.023 3.977 7 H 0.074 0.926 8 N -0.342 5.342 9 C 0.349 3.651 10 O -0.455 6.455 11 C -0.095 4.095 12 C -0.140 4.140 13 C -0.106 4.106 14 C -0.053 4.053 15 N -0.176 5.176 16 H 0.281 0.719 17 C -0.024 4.024 18 C -0.244 4.244 19 C -0.080 4.080 20 N -0.151 5.151 21 C 0.056 3.944 22 N -0.326 5.326 23 C -0.383 4.383 24 H 0.094 0.906 25 C -0.250 4.250 26 N -0.582 5.582 27 Si 0.788 3.212 28 H -0.192 1.192 29 H -0.223 1.223 30 H -0.211 1.211 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.251 0.749 39 H 0.164 0.836 40 H 0.195 0.805 41 H 0.250 0.750 42 H 0.184 0.816 43 H 0.012 0.988 44 H 0.060 0.940 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.836 -3.254 12.103 24.315 hybrid contribution 0.184 -1.002 -1.768 2.041 sum 21.020 -4.257 10.335 23.807 Atomic orbital electron populations 1.21721 0.94473 1.01248 1.01100 1.20821 0.94457 0.93315 0.86693 0.96214 1.21951 0.94088 1.01061 0.98431 1.21652 0.97407 0.99803 0.95721 1.21630 0.78659 0.99443 0.97982 0.92555 1.45801 1.07813 1.26435 1.54178 1.18334 0.87169 0.81472 0.78102 1.90768 1.63410 1.44113 1.47213 1.20695 0.92323 0.94928 1.01505 1.21799 0.95754 0.97856 0.98572 1.20711 0.91184 0.99064 0.99675 1.19327 0.86516 0.98252 1.01156 1.41696 1.03946 1.24493 1.47498 0.71877 1.22746 1.01026 0.85706 0.92886 1.21925 0.88519 1.03813 1.10156 1.20780 0.89234 0.96899 1.01076 1.66777 1.06217 1.25837 1.16311 1.20695 0.83922 0.95048 0.94708 1.44303 1.02306 1.65658 1.20339 1.19462 0.95614 1.36651 0.86576 0.90599 1.25865 0.99140 1.00862 0.99112 1.70181 1.25987 1.45581 1.16417 0.85447 0.78664 0.78964 0.78106 1.19191 1.22325 1.21082 0.90164 0.94308 0.93400 0.88421 0.92655 0.91176 0.89833 0.74939 0.83631 0.80480 0.75020 0.81636 0.98843 0.94028 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 7.96 71.98 0.57 -4.22 16 2 C 0.15 6.40 3.49 44.97 0.16 6.56 16 3 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 4 C -0.12 -3.89 5.37 30.67 0.16 -3.72 16 5 C -0.11 -3.62 5.35 30.62 0.16 -3.46 16 6 C 0.13 5.61 2.60 45.07 0.12 5.73 16 7 H 0.06 2.76 7.58 -2.38 -0.02 2.74 16 8 N -0.69 -27.65 5.07 -444.82 -2.25 -29.91 16 9 C 0.56 24.20 7.77 86.85 0.68 24.87 16 10 O -0.58 -29.25 15.96 -3.82 -0.06 -29.31 16 11 C 0.05 1.84 6.74 42.03 0.28 2.13 16 12 C -0.12 -3.48 9.60 22.61 0.22 -3.26 16 13 C -0.08 -1.61 10.18 22.49 0.23 -1.38 16 14 C 0.06 1.19 7.29 39.25 0.29 1.47 16 15 N -0.57 -5.53 6.05 -187.39 -1.13 -6.66 16 16 H 0.44 0.82 8.96 -92.71 -0.83 -0.02 16 17 C 0.10 0.84 11.81 83.03 0.98 1.82 16 18 C -0.22 -3.70 11.08 23.53 0.26 -3.44 16 19 C 0.06 1.48 7.52 41.93 0.32 1.80 16 20 N -0.44 -14.33 9.57 -174.26 -1.67 -16.00 16 21 C 0.18 9.92 4.86 86.36 0.42 10.34 16 22 N -0.60 -32.12 2.99 -675.23 -2.02 -34.14 16 23 C -0.25 -14.68 8.58 84.03 0.72 -13.96 16 24 H 0.08 4.21 6.24 -2.91 -0.02 4.19 16 25 C -0.05 -3.32 4.94 84.86 0.42 -2.90 16 26 N -0.94 -60.41 11.23 21.65 0.24 -60.16 16 27 Si 0.96 48.86 29.58 68.60 2.03 50.89 16 28 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 29 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 30 H -0.28 -14.38 7.11 99.48 0.71 -13.68 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.04 1.59 7.66 -2.39 -0.02 1.58 16 33 H 0.05 1.82 7.42 -2.39 -0.02 1.80 16 34 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.41 14.46 7.92 -92.71 -0.73 13.72 16 39 H 0.15 4.38 7.61 -2.91 -0.02 4.36 16 40 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.23 -0.63 8.06 -2.91 -0.02 -0.66 16 42 H 0.17 2.35 8.06 -2.90 -0.02 2.33 16 43 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 44 H 0.04 2.67 6.15 -2.39 -0.01 2.65 16 45 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -86.52 365.93 0.59 -85.93 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.53 Total: 20.99 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 5.98 Total: 18.37 kcal Atomic # 7 Polarization: -140.04 SS G_CDS: -6.83 Total: -146.87 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.06 Total: -29.31 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.03 Total: 50.89 kcal Total: -86.52 0.59 -85.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071680356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.735 kcal (2) G-P(sol) polarization free energy of solvation -86.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds