Wall clock time and date at job start Tue Mar 31 2020 16:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58799 * 2 1 4 4 C 1.53164 * 109.58710 * 239.56747 * 2 1 3 5 5 C 1.53049 * 109.32687 * 185.56974 * 4 2 1 6 6 C 1.53041 * 109.52250 * 61.37079 * 5 4 2 7 7 H 1.08998 * 109.49840 * 58.62933 * 6 5 4 8 8 N 1.46505 * 109.49404 * 178.69146 * 6 5 4 9 9 C 1.34771 * 119.99969 * 205.00378 * 8 6 5 10 10 O 1.21608 * 120.00097 * 359.97438 * 9 8 6 11 11 C 1.47523 * 120.00341 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.16328 * 359.97438 * 11 9 8 13 13 C 1.35532 * 119.04808 * 179.97438 * 12 11 9 14 14 C 1.41229 * 119.42322 * 0.02562 * 13 12 11 15 15 C 1.37916 * 132.96635 * 179.97438 * 14 13 12 16 16 N 1.33447 * 107.65774 * 179.97438 * 15 14 13 17 17 C 1.30748 * 109.93655 * 359.97438 * 16 15 14 18 18 N 1.35918 * 109.20888 * 0.02562 * 17 16 15 19 19 C 1.36319 * 120.17026 * 179.72520 * 11 9 8 20 20 C 1.53191 * 109.31761 * 298.64048 * 6 5 4 21 21 N 1.46924 * 109.58887 * 120.28490 * 2 1 3 22 22 C 1.36943 * 120.63047 * 353.37615 * 21 2 1 23 23 H 1.07994 * 119.99694 * 29.03344 * 22 21 2 24 24 C 1.38804 * 119.99860 * 209.04061 * 22 21 2 25 25 N 1.31617 * 120.00554 * 15.00542 * 24 22 21 26 26 Si 1.86804 * 119.99695 * 195.01258 * 24 22 21 27 27 H 1.48496 * 109.47404 * 89.99845 * 26 24 22 28 28 H 1.48509 * 109.46800 * 209.99626 * 26 24 22 29 29 H 1.48502 * 109.47190 * 329.99526 * 26 24 22 30 30 H 1.09004 * 109.47092 * 299.71657 * 1 2 3 31 31 H 1.09000 * 109.47570 * 59.71333 * 1 2 3 32 32 H 1.09001 * 109.47141 * 179.71731 * 1 2 3 33 33 H 1.08996 * 109.48091 * 65.62734 * 4 2 1 34 34 H 1.08996 * 109.50689 * 305.53268 * 4 2 1 35 35 H 1.09006 * 109.46012 * 301.36224 * 5 4 2 36 36 H 1.08993 * 109.46166 * 181.38763 * 5 4 2 37 37 H 0.96996 * 120.00287 * 25.00007 * 8 6 5 38 38 H 1.08005 * 120.47740 * 359.97438 * 12 11 9 39 39 H 1.08004 * 120.28705 * 180.02562 * 13 12 11 40 40 H 1.08001 * 126.17046 * 359.97438 * 15 14 13 41 41 H 1.07998 * 125.39529 * 179.97438 * 17 16 15 42 42 H 1.07994 * 119.74784 * 359.97438 * 19 11 9 43 43 H 1.08993 * 109.58865 * 174.42189 * 20 6 5 44 44 H 1.08998 * 109.58512 * 294.85100 * 20 6 5 45 45 H 0.96998 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 -1.2442 5 6 3.5675 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0655 7 1 3.4987 -2.6530 0.0082 8 7 5.4142 -1.8052 0.1197 9 6 5.9676 -2.8472 0.7710 10 8 5.2573 -3.6714 1.3142 11 6 7.4351 -2.9875 0.8261 12 6 8.2944 -1.9964 0.1735 13 6 9.6397 -2.1471 0.2387 14 6 10.1813 -3.2524 0.9313 15 6 11.4736 -3.6716 1.1685 16 7 11.4095 -4.7942 1.8871 17 6 10.1607 -5.1061 2.1164 18 7 9.3544 -4.1754 1.5409 19 6 7.9986 -4.0371 1.4887 20 6 3.4651 -0.9454 1.3249 21 7 2.0226 -0.6981 1.1953 22 6 1.1537 -1.1101 2.1703 23 1 0.1360 -1.3649 1.9142 24 6 1.5812 -1.2000 3.4879 25 7 2.7045 -0.6215 3.8564 26 14 0.5621 -2.1425 4.7380 27 1 0.9960 -3.5624 4.7610 28 1 0.7531 -1.5446 6.0840 29 1 -0.8729 -2.0694 4.3631 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.7658 -0.1694 -2.1361 34 1 1.6029 -1.7269 -1.2890 35 1 4.0061 0.1460 -1.0995 36 1 3.9376 -1.3474 -2.0653 37 1 5.9808 -1.1477 -0.3133 38 1 7.8620 -1.1578 -0.3520 39 1 10.2919 -1.4282 -0.2349 40 1 12.3749 -3.1800 0.8332 41 1 9.8232 -5.9672 2.6741 42 1 7.3666 -4.7660 1.9740 43 1 3.6518 -1.5691 2.1990 44 1 3.9903 0.0037 1.4316 45 1 3.0033 -0.6847 4.7770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071685950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:37 Heat of formation + Delta-G solvation = 75.365846 kcal Electronic energy + Delta-G solvation = -27828.681236 eV Core-core repulsion = 24040.981802 eV Total energy + Delta-G solvation = -3787.699434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.90450 -39.77893 -37.87418 -36.82831 -34.62325 -33.61176 -32.85196 -31.50431 -30.36960 -29.82791 -28.33403 -26.26305 -25.19692 -24.09770 -23.14358 -22.30879 -22.02393 -20.93375 -20.25306 -19.34905 -18.28344 -17.22345 -16.75059 -16.40562 -16.05108 -15.77520 -15.33307 -14.87669 -14.78094 -14.39969 -14.08997 -13.83123 -13.73087 -13.66666 -13.40703 -13.16300 -12.82574 -12.43796 -12.00441 -11.90881 -11.85606 -11.49108 -11.15682 -10.99916 -10.91285 -10.74689 -10.58825 -10.54023 -10.43621 -10.29416 -10.00590 -9.91105 -9.55299 -9.52361 -9.44927 -8.64614 -8.44631 -7.79049 -6.64892 -5.76475 -3.21262 0.48344 0.80391 2.27273 2.62098 2.94730 3.35981 3.42058 3.47512 3.48341 3.56678 4.19053 4.37213 4.42424 4.51334 4.57312 4.71628 4.73170 5.18825 5.25879 5.32017 5.33517 5.45031 5.52405 5.55166 5.61285 5.71104 5.87500 5.91984 6.05124 6.21547 6.22848 6.25686 6.32943 6.35302 6.40983 6.44088 6.58524 6.67996 6.82502 6.87652 7.01239 7.09342 7.26920 7.60792 7.70163 7.75170 7.84640 8.41967 8.48304 9.21986 9.86141 10.40871 11.31520 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.003216 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.202428 B = 8705.016981 C =10053.787408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.116 3.884 7 H 0.084 0.916 8 N -0.708 5.708 9 C 0.564 3.436 10 O -0.528 6.528 11 C -0.146 4.146 12 C -0.099 4.099 13 C -0.081 4.081 14 C 0.005 3.995 15 C -0.022 4.022 16 N -0.455 5.455 17 C 0.152 3.848 18 N -0.376 5.376 19 C 0.124 3.876 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.393 0.607 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.181 0.819 41 H 0.215 0.785 42 H 0.181 0.819 43 H 0.096 0.904 44 H 0.017 0.983 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.412 -1.750 -10.815 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.011 3.989 7 H 0.102 0.898 8 N -0.358 5.358 9 C 0.349 3.651 10 O -0.405 6.405 11 C -0.152 4.152 12 C -0.120 4.120 13 C -0.100 4.100 14 C -0.104 4.104 15 C -0.175 4.175 16 N -0.168 5.168 17 C -0.123 4.123 18 N -0.048 5.048 19 C 0.001 3.999 20 C 0.041 3.959 21 N -0.307 5.307 22 C -0.382 4.382 23 H 0.089 0.911 24 C -0.192 4.192 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.227 0.773 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.198 0.802 41 H 0.231 0.769 42 H 0.199 0.801 43 H 0.114 0.886 44 H 0.035 0.965 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.568 -2.894 -9.893 16.254 hybrid contribution -0.785 0.352 0.291 0.908 sum 11.783 -2.542 -9.602 15.411 Atomic orbital electron populations 1.21805 0.95962 1.01403 1.00256 1.20491 0.93121 0.93569 0.87028 0.95708 1.22040 0.94182 1.01379 0.98963 1.21688 0.97541 0.99643 0.96609 1.22087 0.77117 1.01152 0.98538 0.89773 1.45937 1.08896 1.26160 1.54851 1.17582 0.85917 0.82202 0.79363 1.90863 1.62511 1.42265 1.44896 1.20601 0.94691 0.96773 1.03158 1.22111 0.92814 0.98147 0.98909 1.20397 0.95098 0.95736 0.98775 1.19778 0.91795 0.94735 1.04055 1.22561 0.94765 0.95883 1.04286 1.69957 1.18284 1.14005 1.14523 1.25225 0.84297 0.97570 1.05242 1.42995 1.05809 1.19974 1.35996 1.21754 0.81353 0.99114 0.97676 1.21096 0.83620 0.96928 0.94295 1.44029 1.02606 1.64813 1.19213 1.19159 0.94722 1.38256 0.86098 0.91127 1.25068 0.97731 0.99421 0.97029 1.69989 1.23323 1.44315 1.16893 0.86323 0.79772 0.80020 0.80848 1.21334 1.21813 1.20412 0.91965 0.94325 0.92796 0.92606 0.92017 0.92212 0.93003 0.77318 0.84005 0.83152 0.80184 0.76877 0.80149 0.88601 0.96471 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.94 37.16 0.30 -2.20 16 2 C 0.16 3.25 3.50 -67.62 -0.24 3.02 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.04 5.37 -26.62 -0.14 -2.18 16 5 C -0.12 -1.76 5.36 -26.68 -0.14 -1.91 16 6 C 0.12 2.13 2.60 -67.81 -0.18 1.96 16 7 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 8 N -0.71 -10.73 5.04 -54.73 -0.28 -11.01 16 9 C 0.56 9.29 7.74 -12.48 -0.10 9.19 16 10 O -0.53 -10.97 15.95 5.27 0.08 -10.88 16 11 C -0.15 -1.89 5.98 -103.48 -0.62 -2.51 16 12 C -0.10 -0.99 9.73 -37.22 -0.36 -1.35 16 13 C -0.08 -0.74 10.09 -39.41 -0.40 -1.14 16 14 C 0.00 0.05 6.78 -84.02 -0.57 -0.52 16 15 C -0.02 -0.24 12.00 -16.97 -0.20 -0.45 16 16 N -0.45 -5.64 11.19 -13.78 -0.15 -5.79 16 17 C 0.15 1.67 12.76 -89.36 -1.14 0.53 16 18 N -0.38 -4.43 2.94 -61.94 -0.18 -4.62 16 19 C 0.12 1.53 10.51 -16.22 -0.17 1.36 16 20 C 0.17 3.91 4.86 -3.71 -0.02 3.90 16 21 N -0.58 -14.12 2.99 -164.80 -0.49 -14.61 16 22 C -0.25 -6.79 8.60 -15.06 -0.13 -6.92 16 23 H 0.07 1.85 6.21 -52.49 -0.33 1.52 16 24 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 25 N -0.90 -26.28 11.14 55.49 0.62 -25.66 16 26 Si 0.90 22.09 29.58 -169.99 -5.03 17.06 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.06 1.23 7.62 -51.93 -0.40 0.84 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 4.52 6.70 -40.82 -0.27 4.25 16 38 H 0.14 1.04 6.58 -52.48 -0.35 0.69 16 39 H 0.15 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.21 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.18 2.10 7.56 -52.49 -0.40 1.71 16 43 H 0.10 2.66 6.06 -51.93 -0.31 2.35 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -33.88 364.13 -10.33 -44.21 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.19 Total: 4.94 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -4.20 Total: 0.88 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -0.49 Total: -61.69 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.88 -10.33 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071685950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.577 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds