Wall clock time and date at job start Tue Mar 31 2020 16:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58799 * 2 1 4 4 C 1.53164 * 109.58710 * 239.56747 * 2 1 3 5 5 C 1.53049 * 109.32687 * 185.56974 * 4 2 1 6 6 C 1.53041 * 109.52250 * 61.37079 * 5 4 2 7 7 H 1.08998 * 109.49840 * 58.62933 * 6 5 4 8 8 N 1.46505 * 109.49404 * 178.69146 * 6 5 4 9 9 C 1.34771 * 119.99969 * 205.00378 * 8 6 5 10 10 O 1.21608 * 120.00097 * 359.97438 * 9 8 6 11 11 C 1.47523 * 120.00341 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.16328 * 359.97438 * 11 9 8 13 13 C 1.35532 * 119.04808 * 179.97438 * 12 11 9 14 14 C 1.41229 * 119.42322 * 0.02562 * 13 12 11 15 15 C 1.37916 * 132.96635 * 179.97438 * 14 13 12 16 16 N 1.33447 * 107.65774 * 179.97438 * 15 14 13 17 17 C 1.30748 * 109.93655 * 359.97438 * 16 15 14 18 18 N 1.35918 * 109.20888 * 0.02562 * 17 16 15 19 19 C 1.36319 * 120.17026 * 179.72520 * 11 9 8 20 20 C 1.53191 * 109.31761 * 298.64048 * 6 5 4 21 21 N 1.46924 * 109.58887 * 120.28490 * 2 1 3 22 22 C 1.36943 * 120.63047 * 353.37615 * 21 2 1 23 23 H 1.07994 * 119.99694 * 29.03344 * 22 21 2 24 24 C 1.38804 * 119.99860 * 209.04061 * 22 21 2 25 25 N 1.31617 * 120.00554 * 15.00542 * 24 22 21 26 26 Si 1.86804 * 119.99695 * 195.01258 * 24 22 21 27 27 H 1.48496 * 109.47404 * 89.99845 * 26 24 22 28 28 H 1.48509 * 109.46800 * 209.99626 * 26 24 22 29 29 H 1.48502 * 109.47190 * 329.99526 * 26 24 22 30 30 H 1.09004 * 109.47092 * 299.71657 * 1 2 3 31 31 H 1.09000 * 109.47570 * 59.71333 * 1 2 3 32 32 H 1.09001 * 109.47141 * 179.71731 * 1 2 3 33 33 H 1.08996 * 109.48091 * 65.62734 * 4 2 1 34 34 H 1.08996 * 109.50689 * 305.53268 * 4 2 1 35 35 H 1.09006 * 109.46012 * 301.36224 * 5 4 2 36 36 H 1.08993 * 109.46166 * 181.38763 * 5 4 2 37 37 H 0.96996 * 120.00287 * 25.00007 * 8 6 5 38 38 H 1.08005 * 120.47740 * 359.97438 * 12 11 9 39 39 H 1.08004 * 120.28705 * 180.02562 * 13 12 11 40 40 H 1.08001 * 126.17046 * 359.97438 * 15 14 13 41 41 H 1.07998 * 125.39529 * 179.97438 * 17 16 15 42 42 H 1.07994 * 119.74784 * 359.97438 * 19 11 9 43 43 H 1.08993 * 109.58865 * 174.42189 * 20 6 5 44 44 H 1.08998 * 109.58512 * 294.85100 * 20 6 5 45 45 H 0.96998 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 -1.2442 5 6 3.5675 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0655 7 1 3.4987 -2.6530 0.0082 8 7 5.4142 -1.8052 0.1197 9 6 5.9676 -2.8472 0.7710 10 8 5.2573 -3.6714 1.3142 11 6 7.4351 -2.9875 0.8261 12 6 8.2944 -1.9964 0.1735 13 6 9.6397 -2.1471 0.2387 14 6 10.1813 -3.2524 0.9313 15 6 11.4736 -3.6716 1.1685 16 7 11.4095 -4.7942 1.8871 17 6 10.1607 -5.1061 2.1164 18 7 9.3544 -4.1754 1.5409 19 6 7.9986 -4.0371 1.4887 20 6 3.4651 -0.9454 1.3249 21 7 2.0226 -0.6981 1.1953 22 6 1.1537 -1.1101 2.1703 23 1 0.1360 -1.3649 1.9142 24 6 1.5812 -1.2000 3.4879 25 7 2.7045 -0.6215 3.8564 26 14 0.5621 -2.1425 4.7380 27 1 0.9960 -3.5624 4.7610 28 1 0.7531 -1.5446 6.0840 29 1 -0.8729 -2.0694 4.3631 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.7658 -0.1694 -2.1361 34 1 1.6029 -1.7269 -1.2890 35 1 4.0061 0.1460 -1.0995 36 1 3.9376 -1.3474 -2.0653 37 1 5.9808 -1.1477 -0.3133 38 1 7.8620 -1.1578 -0.3520 39 1 10.2919 -1.4282 -0.2349 40 1 12.3749 -3.1800 0.8332 41 1 9.8232 -5.9672 2.6741 42 1 7.3666 -4.7660 1.9740 43 1 3.6518 -1.5691 2.1990 44 1 3.9903 0.0037 1.4316 45 1 3.0033 -0.6847 4.7770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071685950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:36 Heat of formation + Delta-G solvation = 54.853169 kcal Electronic energy + Delta-G solvation = -27829.570732 eV Core-core repulsion = 24040.981802 eV Total energy + Delta-G solvation = -3788.588930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.75604 -41.11970 -39.36203 -37.84392 -36.12190 -34.72825 -34.40408 -32.70435 -31.81788 -31.42320 -29.16041 -27.82792 -26.93207 -25.26085 -24.03553 -23.90290 -22.88373 -22.29441 -21.63391 -20.93115 -19.25434 -18.36928 -18.26340 -17.63413 -17.17600 -16.98328 -16.89351 -16.00136 -15.93971 -15.66007 -15.55984 -15.40986 -15.06912 -14.96110 -14.49045 -14.46550 -14.15554 -13.97320 -13.50941 -13.09258 -12.91935 -12.74838 -12.72297 -12.68624 -12.56491 -12.27128 -12.11241 -11.97328 -11.78549 -11.66221 -11.45148 -11.41337 -11.15644 -11.04059 -10.54825 -10.44260 -10.08742 -8.63197 -8.60185 -7.85252 -5.31106 -0.47274 0.00623 1.35991 1.40758 1.45010 1.50655 1.60084 2.06205 2.18226 2.50100 2.51320 3.30722 3.36171 3.47023 3.64111 3.69713 3.77163 3.83030 3.89902 3.97294 4.10909 4.26293 4.39722 4.44142 4.50855 4.62449 4.72360 4.76809 4.80637 4.90209 4.91281 5.01941 5.08752 5.10444 5.20061 5.30417 5.33922 5.42964 5.44986 5.55558 5.56722 5.62836 5.70879 5.81050 6.01025 6.40578 6.52851 6.76663 7.14878 7.20574 7.90766 8.39007 9.19519 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.003216 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.202428 B = 8705.016981 C =10053.787408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.131 3.869 7 H 0.054 0.946 8 N -0.695 5.695 9 C 0.561 3.439 10 O -0.582 6.582 11 C -0.155 4.155 12 C -0.107 4.107 13 C -0.066 4.066 14 C -0.015 4.015 15 C -0.024 4.024 16 N -0.481 5.481 17 C 0.146 3.854 18 N -0.383 5.383 19 C 0.119 3.881 20 C 0.178 3.822 21 N -0.603 5.603 22 C -0.248 4.248 23 H 0.075 0.925 24 C -0.053 4.053 25 N -0.934 5.934 26 Si 0.954 3.046 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.262 1.262 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.414 0.586 38 H 0.171 0.829 39 H 0.191 0.809 40 H 0.209 0.791 41 H 0.239 0.761 42 H 0.177 0.823 43 H 0.043 0.957 44 H 0.000 1.000 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -0.691 -13.775 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.025 3.975 7 H 0.072 0.928 8 N -0.346 5.346 9 C 0.349 3.651 10 O -0.463 6.463 11 C -0.161 4.161 12 C -0.128 4.128 13 C -0.085 4.085 14 C -0.123 4.123 15 C -0.176 4.176 16 N -0.194 5.194 17 C -0.128 4.128 18 N -0.055 5.055 19 C -0.004 4.004 20 C 0.051 3.949 21 N -0.327 5.327 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.248 4.248 25 N -0.580 5.580 26 Si 0.783 3.217 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.186 1.186 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.252 0.748 38 H 0.188 0.812 39 H 0.208 0.792 40 H 0.225 0.775 41 H 0.255 0.745 42 H 0.194 0.806 43 H 0.062 0.938 44 H 0.018 0.982 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.540 -1.796 -12.915 18.798 hybrid contribution -1.025 0.016 1.190 1.570 sum 12.515 -1.780 -11.725 17.242 Atomic orbital electron populations 1.21744 0.94899 1.01113 1.01031 1.20814 0.94218 0.93471 0.86739 0.95900 1.21946 0.94655 1.00864 0.98278 1.21664 0.97043 1.00119 0.95748 1.21590 0.78646 0.99385 0.97874 0.92799 1.45703 1.07914 1.26438 1.54532 1.18127 0.87338 0.81529 0.78141 1.90833 1.64177 1.44233 1.47067 1.20406 0.92767 0.98318 1.04632 1.22325 0.92842 0.98255 0.99329 1.20853 0.95176 0.95216 0.97223 1.20287 0.91968 0.95434 1.04582 1.23113 0.95735 0.95362 1.03399 1.69992 1.18858 1.15038 1.15555 1.25841 0.84095 0.98018 1.04885 1.43090 1.05477 1.20542 1.36391 1.21710 0.81876 0.99135 0.97693 1.20787 0.83721 0.95392 0.94973 1.44329 1.02580 1.65718 1.20122 1.19488 0.95187 1.36495 0.86719 0.90767 1.25752 0.99015 1.01076 0.98917 1.70147 1.25036 1.46395 1.16445 0.85451 0.79389 0.78083 0.78744 1.22340 1.22205 1.18644 0.94416 0.90275 0.93593 0.88537 0.92943 0.90536 0.89395 0.74772 0.81153 0.79172 0.77456 0.74459 0.80611 0.93807 0.98242 0.94727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 7.94 71.98 0.57 -3.98 16 2 C 0.15 5.83 3.50 44.96 0.16 5.99 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -3.44 5.37 30.67 0.16 -3.28 16 5 C -0.11 -2.91 5.36 30.62 0.16 -2.74 16 6 C 0.13 4.80 2.60 45.07 0.12 4.92 16 7 H 0.05 2.32 7.58 -2.39 -0.02 2.31 16 8 N -0.69 -20.62 5.04 -445.32 -2.24 -22.87 16 9 C 0.56 18.93 7.74 86.69 0.67 19.60 16 10 O -0.58 -25.70 15.95 -4.06 -0.06 -25.77 16 11 C -0.15 -3.97 5.98 -19.12 -0.11 -4.09 16 12 C -0.11 -1.87 9.73 23.80 0.23 -1.64 16 13 C -0.07 -1.00 10.09 22.38 0.23 -0.77 16 14 C -0.02 -0.31 6.78 38.81 0.26 -0.05 16 15 C -0.02 -0.48 12.00 84.37 1.01 0.53 16 16 N -0.48 -11.41 11.19 -197.51 -2.21 -13.62 16 17 C 0.15 3.14 12.76 179.91 2.30 5.43 16 18 N -0.38 -8.81 2.94 -349.87 -1.03 -9.84 16 19 C 0.12 3.00 10.51 83.54 0.88 3.88 16 20 C 0.18 8.62 4.86 86.36 0.42 9.04 16 21 N -0.60 -29.74 2.99 -675.31 -2.02 -31.76 16 22 C -0.25 -13.69 8.60 84.03 0.72 -12.97 16 23 H 0.07 3.95 6.21 -2.91 -0.02 3.93 16 24 C -0.05 -3.04 4.96 84.86 0.42 -2.62 16 25 N -0.93 -57.24 11.14 21.65 0.24 -57.00 16 26 Si 0.95 47.07 29.58 68.60 2.03 49.10 16 27 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 28 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 29 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 30 H 0.04 1.47 7.62 -2.39 -0.02 1.45 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.65 7.45 -2.39 -0.02 1.63 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.86 8.14 -2.38 -0.02 1.85 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.41 8.55 6.70 -92.71 -0.62 7.93 16 38 H 0.17 1.85 6.58 -2.91 -0.02 1.83 16 39 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 40 H 0.21 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.24 3.40 8.06 -2.91 -0.02 3.37 16 42 H 0.18 4.43 7.56 -2.91 -0.02 4.41 16 43 H 0.04 2.58 6.06 -2.39 -0.01 2.57 16 44 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -79.61 364.13 3.30 -76.31 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.40 Total: 18.17 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 8.20 Total: 17.26 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -7.26 Total: -135.08 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -79.61 3.30 -76.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071685950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.165 kcal (2) G-P(sol) polarization free energy of solvation -79.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds