Wall clock time and date at job start Tue Mar 31 2020 16:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58343 * 2 1 4 4 C 1.53193 * 109.58561 * 120.27614 * 2 1 3 5 5 C 1.53044 * 109.30979 * 174.42571 * 4 2 1 6 6 C 1.53038 * 109.53752 * 298.63604 * 5 4 2 7 7 H 1.08997 * 109.49699 * 181.35153 * 6 5 4 8 8 N 1.46501 * 109.49816 * 301.41385 * 6 5 4 9 9 C 1.34773 * 119.99948 * 204.72704 * 8 6 5 10 10 O 1.21601 * 120.00194 * 0.27446 * 9 8 6 11 11 C 1.47476 * 119.99915 * 180.27676 * 9 8 6 12 12 C 1.38999 * 120.29421 * 0.02562 * 11 9 8 13 13 C 1.38505 * 120.36622 * 179.97438 * 12 11 9 14 14 C 1.37831 * 120.78762 * 0.02562 * 13 12 11 15 15 C 1.39205 * 120.19879 * 359.97438 * 14 13 12 16 16 N 1.37220 * 133.65008 * 179.97438 * 15 14 13 17 17 H 0.97004 * 125.98581 * 0.04349 * 16 15 14 18 18 N 1.40032 * 108.03753 * 180.02562 * 16 15 14 19 19 C 1.30271 * 109.69965 * 359.97438 * 18 16 15 20 20 C 1.40685 * 119.79136 * 359.72569 * 15 14 13 21 21 C 1.53193 * 109.31418 * 61.36653 * 6 5 4 22 22 N 1.46919 * 109.58981 * 239.57109 * 2 1 3 23 23 C 1.36936 * 120.63059 * 6.62278 * 22 2 1 24 24 H 1.07998 * 120.00065 * 330.18281 * 23 22 2 25 25 C 1.38816 * 120.00158 * 150.18767 * 23 22 2 26 26 N 1.31615 * 119.99629 * 344.47632 * 25 23 22 27 27 Si 1.86800 * 119.99959 * 164.47071 * 25 23 22 28 28 H 1.48494 * 109.47339 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46746 * 120.00446 * 27 25 23 30 30 H 1.48504 * 109.47043 * 239.99849 * 27 25 23 31 31 H 1.08995 * 109.47388 * 299.71857 * 1 2 3 32 32 H 1.09002 * 109.47434 * 59.72061 * 1 2 3 33 33 H 1.09005 * 109.47110 * 179.71980 * 1 2 3 34 34 H 1.09000 * 109.49766 * 54.47764 * 4 2 1 35 35 H 1.09001 * 109.50002 * 294.37426 * 4 2 1 36 36 H 1.09000 * 109.45771 * 178.61793 * 5 4 2 37 37 H 1.08995 * 109.44907 * 58.65289 * 5 4 2 38 38 H 0.96996 * 119.99818 * 25.00512 * 8 6 5 39 39 H 1.08002 * 119.81609 * 359.97438 * 12 11 9 40 40 H 1.08001 * 119.60586 * 179.97438 * 13 12 11 41 41 H 1.08004 * 119.89678 * 179.97438 * 14 13 12 42 42 H 1.07994 * 125.64361 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.58294 * 65.15219 * 21 6 5 44 44 H 1.08994 * 109.58835 * 185.57601 * 21 6 5 45 45 H 0.97009 * 119.99918 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5675 -0.8463 1.1713 6 6 3.9569 -1.6656 -0.0612 7 1 5.0412 -1.7700 -0.1009 8 7 3.3406 -2.9923 0.0188 9 6 3.8941 -4.0330 -0.6346 10 8 4.9079 -3.8719 -1.2865 11 6 3.2703 -5.3671 -0.5590 12 6 2.1112 -5.5581 0.1840 13 6 1.5237 -6.8104 0.2556 14 6 2.0750 -7.8870 -0.4052 15 6 3.2355 -7.7277 -1.1574 16 7 4.0031 -8.5828 -1.9073 17 1 3.8361 -9.5288 -2.0423 18 7 5.0694 -7.8509 -2.4439 19 6 4.9862 -6.6086 -2.0607 20 6 3.8423 -6.4615 -1.2465 21 6 3.4651 -0.9486 -1.3224 22 7 2.0226 -0.7010 -1.1935 23 6 1.1538 -1.1155 -2.1675 24 1 0.1397 -1.3818 -1.9087 25 6 1.5767 -1.1935 -3.4874 26 7 2.6875 -0.5933 -3.8589 27 14 0.5691 -2.1502 -4.7359 28 1 -0.6266 -2.7264 -4.0701 29 1 0.1372 -1.2390 -5.8261 30 1 1.3957 -3.2452 -5.3044 31 1 -0.3634 0.5094 0.8924 32 1 -0.3634 0.5182 -0.8875 33 1 -0.3633 -1.0277 -0.0050 34 1 1.6030 -1.7236 1.2937 35 1 1.7660 -0.1639 2.1371 36 1 3.9378 -1.3419 2.0687 37 1 4.0058 0.1490 1.0991 38 1 2.5320 -3.1208 0.5388 39 1 1.6661 -4.7254 0.7083 40 1 0.6234 -6.9449 0.8367 41 1 1.6052 -8.8573 -0.3391 42 1 5.6757 -5.8207 -2.3256 43 1 3.9904 0.0003 -1.4316 44 1 3.6519 -1.5745 -2.1950 45 1 2.9829 -0.6475 -4.7814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071728024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:20 Heat of formation + Delta-G solvation = 55.077576 kcal Electronic energy + Delta-G solvation = -29000.249597 eV Core-core repulsion = 25211.670398 eV Total energy + Delta-G solvation = -3788.579199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.55150 -40.90417 -39.14624 -37.85233 -35.75817 -34.47573 -33.64428 -32.32515 -31.71348 -30.93864 -30.28886 -27.81339 -26.75242 -25.14046 -23.84812 -23.50009 -22.86086 -22.11153 -21.81890 -20.34080 -19.35605 -18.28243 -17.81536 -17.44633 -17.11287 -16.50609 -16.15266 -15.94023 -15.80717 -15.62671 -15.50650 -15.41641 -14.92514 -14.63154 -14.44317 -14.38132 -13.98541 -13.60768 -13.01255 -12.92638 -12.84043 -12.76819 -12.70907 -12.55840 -12.49681 -12.37839 -12.07937 -12.04705 -12.02121 -11.53205 -11.36608 -11.17412 -11.00619 -10.81265 -10.50638 -9.94029 -9.70471 -9.07125 -8.53297 -7.79738 -5.24471 -0.51713 0.39019 1.38604 1.39281 1.43064 1.50172 1.73297 1.95871 2.32629 2.51400 2.90674 3.37005 3.58566 3.63688 3.67512 3.87344 3.99093 4.02589 4.11314 4.15816 4.23530 4.33443 4.54276 4.59450 4.69107 4.75643 4.82019 4.86085 4.88957 5.01600 5.09716 5.13230 5.17228 5.24024 5.31927 5.33324 5.37062 5.39919 5.62697 5.66377 5.72550 5.75177 5.78480 5.79850 6.29932 6.47587 6.52262 6.72577 7.21946 7.38836 7.96820 8.47429 9.25507 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.004916 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.778120 B = 5693.969565 C = 6503.492016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.011 0.989 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.065 0.935 8 N -0.681 5.681 9 C 0.546 3.454 10 O -0.583 6.583 11 C -0.080 4.080 12 C -0.107 4.107 13 C -0.068 4.068 14 C -0.108 4.108 15 C 0.111 3.889 16 N -0.496 5.496 17 H 0.456 0.544 18 N -0.271 5.271 19 C 0.069 3.931 20 C -0.163 4.163 21 C 0.172 3.828 22 N -0.593 5.593 23 C -0.229 4.229 24 H 0.080 0.920 25 C -0.055 4.055 26 N -0.937 5.937 27 Si 0.943 3.057 28 H -0.255 1.255 29 H -0.296 1.296 30 H -0.310 1.310 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.407 0.593 39 H 0.151 0.849 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.185 0.815 43 H -0.005 1.005 44 H 0.045 0.955 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 -12.899 16.114 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.029 0.971 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.083 0.917 8 N -0.332 5.332 9 C 0.334 3.666 10 O -0.465 6.465 11 C -0.086 4.086 12 C -0.128 4.128 13 C -0.088 4.088 14 C -0.130 4.130 15 C -0.007 4.007 16 N -0.214 5.214 17 H 0.304 0.696 18 N -0.087 5.087 19 C -0.126 4.126 20 C -0.172 4.172 21 C 0.045 3.955 22 N -0.317 5.317 23 C -0.360 4.360 24 H 0.097 0.903 25 C -0.249 4.249 26 N -0.585 5.585 27 Si 0.773 3.227 28 H -0.178 1.178 29 H -0.223 1.223 30 H -0.239 1.239 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.246 0.754 39 H 0.169 0.831 40 H 0.201 0.799 41 H 0.189 0.811 42 H 0.202 0.798 43 H 0.013 0.987 44 H 0.063 0.937 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.512 -13.608 14.830 20.431 hybrid contribution -0.480 0.172 -1.366 1.458 sum -3.992 -13.436 13.463 19.435 Atomic orbital electron populations 1.21727 0.94572 1.01545 1.00740 1.20783 0.94259 0.93118 0.87051 0.97105 1.21965 0.94522 1.01246 0.98027 1.21670 0.97497 0.99785 0.95897 1.21503 0.96366 0.82308 0.97669 0.91709 1.45626 1.29560 1.07646 1.50385 1.18561 0.83892 0.85272 0.78892 1.90687 1.27218 1.85841 1.42767 1.19546 0.97683 0.91163 1.00223 1.21531 0.93297 0.99828 0.98118 1.21430 0.99999 0.90109 0.97277 1.20740 0.92637 1.02271 0.97344 1.19150 0.95552 0.89414 0.96583 1.46033 1.20807 1.11410 1.43135 0.69554 1.76681 1.07905 1.05409 1.18661 1.24089 0.97931 0.94153 0.96387 1.18933 0.98879 0.94425 1.04927 1.20832 0.84304 0.95168 0.95186 1.44257 1.02121 1.65334 1.19984 1.19446 0.95383 1.34968 0.86160 0.90282 1.25705 0.98890 1.01344 0.99003 1.70163 1.26023 1.46292 1.15985 0.85548 0.78942 0.78086 0.80115 1.17817 1.22338 1.23874 0.90585 0.94859 0.92625 0.91474 0.89030 0.89469 0.91000 0.75401 0.83106 0.79943 0.81082 0.79799 0.98716 0.93680 0.95053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.95 71.98 0.57 -3.52 16 2 C 0.15 5.52 3.50 44.98 0.16 5.68 16 3 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 4 C -0.12 -3.09 5.21 30.67 0.16 -2.93 16 5 C -0.11 -3.05 5.59 30.62 0.17 -2.88 16 6 C 0.13 4.77 2.81 45.07 0.13 4.90 16 7 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 8 N -0.68 -23.36 4.87 -445.39 -2.17 -25.53 16 9 C 0.55 21.32 7.73 86.68 0.67 21.99 16 10 O -0.58 -27.50 14.61 -4.03 -0.06 -27.56 16 11 C -0.08 -2.60 5.90 -19.90 -0.12 -2.72 16 12 C -0.11 -2.43 9.52 22.52 0.21 -2.22 16 13 C -0.07 -1.06 10.00 22.24 0.22 -0.84 16 14 C -0.11 -1.81 10.06 22.41 0.23 -1.59 16 15 C 0.11 2.80 7.32 39.13 0.29 3.09 16 16 N -0.50 -11.98 7.45 -51.56 -0.38 -12.37 16 17 H 0.46 7.09 8.96 -213.36 -1.91 5.18 16 18 N -0.27 -8.66 12.58 -56.45 -0.71 -9.37 16 19 C 0.07 2.46 11.23 85.65 0.96 3.43 16 20 C -0.16 -5.44 6.00 -21.20 -0.13 -5.56 16 21 C 0.17 8.44 4.88 86.36 0.42 8.86 16 22 N -0.59 -27.66 2.90 -675.25 -1.96 -29.62 16 23 C -0.23 -11.94 8.58 84.03 0.72 -11.22 16 24 H 0.08 3.90 6.23 -2.91 -0.02 3.89 16 25 C -0.05 -3.13 4.94 84.86 0.42 -2.71 16 26 N -0.94 -58.36 11.23 21.65 0.24 -58.12 16 27 Si 0.94 46.83 29.58 68.60 2.03 48.86 16 28 H -0.25 -11.49 7.11 99.48 0.71 -10.78 16 29 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 30 H -0.31 -16.33 7.11 99.48 0.71 -15.62 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.03 1.22 7.67 -2.39 -0.02 1.20 16 33 H 0.05 1.73 7.40 -2.38 -0.02 1.71 16 34 H 0.07 1.61 6.40 -2.39 -0.02 1.59 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.41 11.39 4.80 -92.71 -0.44 10.95 16 39 H 0.15 2.71 6.38 -2.91 -0.02 2.69 16 40 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.19 7.06 6.95 -2.91 -0.02 7.04 16 43 H -0.01 -0.27 8.14 -2.38 -0.02 -0.29 16 44 H 0.04 2.68 6.14 -2.39 -0.01 2.67 16 45 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -79.37 357.53 0.76 -78.61 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -1.31 Total: 23.35 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.08 Total: 11.76 kcal Atomic # 7 Polarization: -130.04 SS G_CDS: -4.98 Total: -135.02 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.06 Total: -27.56 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -79.37 0.76 -78.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071728024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.688 kcal (2) G-P(sol) polarization free energy of solvation -79.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds