Wall clock time and date at job start Tue Mar 31 2020 16:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70056 * 2 1 4 4 C 1.53186 * 109.58892 * 239.64243 * 2 1 3 5 5 C 1.53042 * 109.31541 * 185.57889 * 4 2 1 6 6 C 1.53042 * 109.53746 * 61.36077 * 5 4 2 7 7 H 1.08997 * 109.52565 * 58.60794 * 6 5 4 8 8 N 1.46504 * 109.49683 * 178.68642 * 6 5 4 9 9 C 1.34776 * 119.99631 * 204.56643 * 8 6 5 10 10 O 1.21640 * 120.00543 * 0.26822 * 9 8 6 11 11 C 1.47167 * 119.99699 * 180.27737 * 9 8 6 12 12 C 1.38593 * 120.72849 * 359.97438 * 11 9 8 13 13 C 1.38924 * 121.36766 * 180.02562 * 12 11 9 14 14 C 1.35827 * 122.59572 * 359.97438 * 13 12 11 15 15 C 1.40846 * 120.55637 * 359.97438 * 14 13 12 16 16 C 1.38424 * 134.89985 * 180.02562 * 15 14 13 17 17 N 1.33882 * 107.84734 * 179.97438 * 16 15 14 18 18 H 0.96997 * 125.02283 * 180.02562 * 17 16 15 19 19 N 1.39983 * 109.96096 * 359.97438 * 17 16 15 20 20 C 1.31481 * 109.01758 * 359.73886 * 19 17 16 21 21 C 1.53192 * 109.31523 * 298.63574 * 6 5 4 22 22 N 1.46926 * 108.77120 * 54.63488 * 21 6 5 23 23 C 1.36945 * 120.62998 * 126.37073 * 22 21 6 24 24 H 1.07995 * 119.99832 * 209.02291 * 23 22 21 25 25 C 1.38811 * 119.99840 * 29.02353 * 23 22 21 26 26 N 1.31621 * 120.00013 * 15.03029 * 25 23 22 27 27 Si 1.86800 * 119.99855 * 195.02897 * 25 23 22 28 28 H 1.48498 * 109.47101 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.46912 * 119.99732 * 27 25 23 30 30 H 1.48499 * 109.46952 * 239.99624 * 27 25 23 31 31 H 1.08995 * 109.47113 * 299.64930 * 1 2 3 32 32 H 1.08994 * 109.47036 * 59.64965 * 1 2 3 33 33 H 1.08998 * 109.47107 * 179.64508 * 1 2 3 34 34 H 1.09008 * 109.49795 * 305.52771 * 4 2 1 35 35 H 1.08998 * 109.50159 * 65.59181 * 4 2 1 36 36 H 1.08997 * 109.45776 * 301.34372 * 5 4 2 37 37 H 1.08998 * 109.46403 * 181.37895 * 5 4 2 38 38 H 0.96996 * 119.99902 * 24.84026 * 8 6 5 39 39 H 1.08003 * 119.31538 * 0.02562 * 12 11 9 40 40 H 1.07997 * 118.70379 * 180.02562 * 13 12 11 41 41 H 1.07998 * 119.72582 * 179.97438 * 14 13 12 42 42 H 1.07999 * 126.07677 * 0.02562 * 16 15 14 43 43 H 1.09000 * 109.58761 * 174.41789 * 21 6 5 44 44 H 1.08994 * 109.58963 * 294.70972 * 21 6 5 45 45 H 0.97005 * 119.99705 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5675 -0.8480 -1.1700 6 6 3.9569 -1.6656 0.0637 7 1 3.4988 -2.6530 0.0058 8 7 5.4143 -1.8052 0.1178 9 6 5.9678 -2.8432 0.7755 10 8 5.2574 -3.6669 1.3200 11 6 7.4319 -2.9801 0.8350 12 6 8.2556 -2.0508 0.2197 13 6 9.6392 -2.1673 0.2670 14 6 10.2661 -3.1856 0.9112 15 6 9.5208 -4.1828 1.5699 16 6 9.8356 -5.3182 2.2966 17 7 8.6882 -5.8866 2.6873 18 1 8.6200 -6.6986 3.2134 19 7 7.6011 -5.1353 2.2253 20 6 8.0514 -4.0985 1.5537 21 6 3.4651 -0.9468 1.3239 22 7 2.0226 -0.6994 1.1945 23 6 1.1536 -1.1133 2.1687 24 1 0.1360 -1.3679 1.9118 25 6 1.5807 -1.2056 3.4862 26 7 2.7037 -0.6272 3.8560 27 14 0.5618 -2.1508 4.7343 28 1 -0.6469 -2.7022 4.0709 29 1 1.3712 -3.2633 5.2934 30 1 0.1509 -1.2377 5.8311 31 1 -0.3633 0.5084 0.8931 32 1 -0.3633 0.5192 -0.8868 33 1 -0.3633 -1.0276 -0.0064 34 1 1.6030 -1.7254 -1.2912 35 1 1.7656 -0.1672 -2.1368 36 1 4.0061 0.1473 -1.0993 37 1 3.9379 -1.3450 -2.0667 38 1 5.9808 -1.1484 -0.3164 39 1 7.8128 -1.2187 -0.3075 40 1 10.2400 -1.4182 -0.2271 41 1 11.3451 -3.2311 0.9183 42 1 10.8302 -5.6806 2.5109 43 1 3.6518 -1.5716 2.1973 44 1 3.9921 0.0010 1.4332 45 1 3.0024 -0.6920 4.7766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071732496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:54 Heat of formation + Delta-G solvation = 55.131716 kcal Electronic energy + Delta-G solvation = -28056.611358 eV Core-core repulsion = 24268.034506 eV Total energy + Delta-G solvation = -3788.576851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.19171 -40.81633 -39.20569 -37.73889 -35.96681 -34.66853 -33.19782 -32.42154 -31.79275 -31.31108 -29.81210 -27.72609 -26.77762 -25.56952 -24.07679 -23.24574 -22.76190 -21.88513 -21.24163 -20.57501 -19.07141 -18.39699 -18.30407 -17.73833 -17.20407 -16.77425 -16.10707 -16.05482 -15.77492 -15.45866 -15.36863 -15.07673 -15.02283 -14.87919 -14.48183 -14.10761 -14.05033 -13.50232 -13.09597 -13.01517 -12.81766 -12.73693 -12.69115 -12.60686 -12.53567 -12.27820 -12.12105 -11.97822 -11.66821 -11.50264 -11.38136 -11.26689 -11.13548 -10.68372 -10.56346 -10.07280 -9.83475 -8.66642 -8.60038 -7.86793 -5.32952 -0.58713 0.88319 1.20749 1.35176 1.40892 1.48388 1.84039 2.10079 2.25616 2.48383 2.96272 3.29389 3.32050 3.57973 3.71069 3.92796 4.02580 4.10043 4.18024 4.25763 4.27229 4.39839 4.46246 4.52932 4.61814 4.71625 4.72061 4.82212 4.89717 4.98502 5.01138 5.06941 5.19008 5.30432 5.32510 5.36810 5.44478 5.51897 5.55339 5.57704 5.61929 5.68976 5.82055 5.94835 6.28639 6.39754 6.63699 6.73169 7.13968 7.42691 7.89309 8.37872 9.18049 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.003731 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.229419 B = 7502.627297 C = 8988.804919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.025 0.975 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.133 3.867 7 H 0.043 0.957 8 N -0.706 5.706 9 C 0.545 3.455 10 O -0.586 6.586 11 C -0.177 4.177 12 C -0.002 4.002 13 C -0.190 4.190 14 C 0.015 3.985 15 C -0.251 4.251 16 C 0.133 3.867 17 N -0.427 5.427 18 H 0.457 0.543 19 N -0.355 5.355 20 C 0.106 3.894 21 C 0.182 3.818 22 N -0.604 5.604 23 C -0.248 4.248 24 H 0.076 0.924 25 C -0.056 4.056 26 N -0.935 5.935 27 Si 0.955 3.045 28 H -0.260 1.260 29 H -0.306 1.306 30 H -0.284 1.284 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.411 0.589 39 H 0.154 0.846 40 H 0.169 0.831 41 H 0.176 0.824 42 H 0.256 0.744 43 H 0.037 0.963 44 H -0.001 1.001 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.323 -3.516 -12.101 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.043 0.957 4 C -0.157 4.157 5 C -0.144 4.144 6 C 0.027 3.973 7 H 0.061 0.939 8 N -0.358 5.358 9 C 0.334 3.666 10 O -0.466 6.466 11 C -0.184 4.184 12 C -0.024 4.024 13 C -0.209 4.209 14 C -0.005 4.005 15 C -0.261 4.261 16 C -0.026 4.026 17 N -0.127 5.127 18 H 0.304 0.696 19 N -0.181 5.181 20 C -0.051 4.051 21 C 0.054 3.946 22 N -0.329 5.329 23 C -0.379 4.379 24 H 0.094 0.906 25 C -0.251 4.251 26 N -0.581 5.581 27 Si 0.784 3.216 28 H -0.183 1.183 29 H -0.234 1.234 30 H -0.211 1.211 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.248 0.752 39 H 0.172 0.828 40 H 0.186 0.814 41 H 0.194 0.806 42 H 0.272 0.728 43 H 0.055 0.945 44 H 0.017 0.983 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 19.699 -4.720 -11.154 23.125 hybrid contribution -0.082 -0.430 1.443 1.508 sum 19.617 -5.151 -9.711 22.487 Atomic orbital electron populations 1.21734 0.94698 1.01065 1.01175 1.20828 0.94332 0.93472 0.86561 0.95703 1.21963 0.94542 1.00776 0.98464 1.21649 0.97150 1.00023 0.95556 1.21486 0.79202 0.98764 0.97874 0.93916 1.45733 1.07537 1.27148 1.55400 1.18659 0.88793 0.81174 0.77928 1.90815 1.64683 1.44220 1.46908 1.19906 0.90834 0.98808 1.08875 1.21653 0.94879 0.94359 0.91516 1.20773 0.93017 1.01816 1.05263 1.20891 1.01153 0.89160 0.89296 1.20180 0.91307 1.02433 1.12193 1.23825 0.93908 0.91834 0.93009 1.46641 1.03886 1.22798 1.39404 0.69595 1.77845 1.08312 1.09369 1.22610 1.21967 0.94337 0.93221 0.95618 1.20732 0.83782 0.95145 0.94914 1.44351 1.02475 1.65710 1.20320 1.19542 0.95174 1.36432 0.86730 0.90603 1.25810 0.99033 1.01196 0.99086 1.70175 1.25136 1.46551 1.16277 0.85371 0.78612 0.77994 0.79632 1.18347 1.23405 1.21074 0.94272 0.90026 0.93757 0.93262 0.88208 0.90387 0.89577 0.75160 0.82811 0.81361 0.80637 0.72846 0.94480 0.98319 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 7.94 71.98 0.57 -4.29 16 2 C 0.15 6.39 3.50 44.97 0.16 6.54 16 3 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 4 C -0.12 -3.90 5.37 30.67 0.16 -3.74 16 5 C -0.11 -3.37 5.35 30.62 0.16 -3.20 16 6 C 0.13 5.76 2.60 45.07 0.12 5.88 16 7 H 0.04 2.18 7.58 -2.39 -0.02 2.16 16 8 N -0.71 -26.45 5.03 -445.66 -2.24 -28.69 16 9 C 0.54 24.12 7.73 86.59 0.67 24.79 16 10 O -0.59 -33.30 15.99 -4.16 -0.07 -33.37 16 11 C -0.18 -6.23 6.05 -18.65 -0.11 -6.34 16 12 C 0.00 -0.04 9.50 22.52 0.21 0.17 16 13 C -0.19 -2.89 9.83 21.87 0.21 -2.68 16 14 C 0.01 0.21 10.02 22.35 0.22 0.44 16 15 C -0.25 -5.42 6.34 -20.24 -0.13 -5.54 16 16 C 0.13 1.85 12.08 84.42 1.02 2.87 16 17 N -0.43 -9.25 7.18 -56.29 -0.40 -9.66 16 18 H 0.46 6.27 8.96 -213.40 -1.91 4.36 16 19 N -0.35 -13.46 12.24 -45.22 -0.55 -14.01 16 20 C 0.11 3.73 7.28 43.75 0.32 4.04 16 21 C 0.18 9.86 4.86 86.36 0.42 10.28 16 22 N -0.60 -32.57 2.99 -675.24 -2.02 -34.59 16 23 C -0.25 -14.74 8.60 84.03 0.72 -14.02 16 24 H 0.08 4.32 6.21 -2.91 -0.02 4.30 16 25 C -0.06 -3.51 4.96 84.86 0.42 -3.09 16 26 N -0.93 -61.73 11.14 21.65 0.24 -61.49 16 27 Si 0.95 50.49 29.58 68.60 2.03 52.52 16 28 H -0.26 -12.79 7.11 99.48 0.71 -12.09 16 29 H -0.31 -16.90 7.11 99.48 0.71 -16.20 16 30 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 31 H 0.04 1.62 7.62 -2.39 -0.02 1.60 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.04 1.72 7.44 -2.39 -0.02 1.70 16 34 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.41 11.22 6.65 -92.71 -0.62 10.60 16 39 H 0.15 2.53 6.38 -2.91 -0.02 2.51 16 40 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.26 -0.13 8.06 -2.91 -0.02 -0.15 16 43 H 0.04 2.45 6.06 -2.39 -0.01 2.43 16 44 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.24 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -101.75 363.86 0.65 -101.10 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -1.49 Total: 16.08 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 5.16 Total: 12.11 kcal Atomic # 7 Polarization: -143.47 SS G_CDS: -4.98 Total: -148.45 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.07 Total: -33.37 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.03 Total: 52.52 kcal Total: -101.75 0.65 -101.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071732496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.236 kcal (2) G-P(sol) polarization free energy of solvation -101.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds