Wall clock time and date at job start Tue Mar 31 2020 16:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.59009 * 2 1 4 4 C 1.53196 * 109.58416 * 239.71242 * 2 1 3 5 5 C 1.53039 * 109.31201 * 185.58126 * 4 2 1 6 6 C 1.53038 * 109.54114 * 61.36521 * 5 4 2 7 7 H 1.08997 * 109.49489 * 58.61865 * 6 5 4 8 8 N 1.46493 * 109.49953 * 178.68487 * 6 5 4 9 9 C 1.34773 * 120.00082 * 204.93944 * 8 6 5 10 10 O 1.21598 * 119.99972 * 359.97438 * 9 8 6 11 11 C 1.47522 * 120.00247 * 180.02562 * 9 8 6 12 12 C 1.41046 * 119.38786 * 359.72354 * 11 9 8 13 13 C 1.35191 * 121.64797 * 180.26498 * 12 11 9 14 14 C 1.41380 * 119.93296 * 0.02770 * 13 12 11 15 15 N 1.31926 * 134.39250 * 180.02562 * 14 13 12 16 16 N 1.39910 * 109.06310 * 179.97438 * 15 14 13 17 17 H 0.97005 * 124.99147 * 179.97438 * 16 15 14 18 18 C 1.33818 * 110.02965 * 0.02562 * 16 15 14 19 19 C 1.38547 * 107.83495 * 359.97438 * 18 16 15 20 20 C 1.38221 * 119.39365 * 179.97438 * 11 9 8 21 21 C 1.53195 * 109.33790 * 298.65321 * 6 5 4 22 22 N 1.46926 * 109.58322 * 120.42892 * 2 1 3 23 23 C 1.36934 * 120.63396 * 353.39300 * 22 2 1 24 24 H 1.08001 * 119.99747 * 29.02150 * 23 22 2 25 25 C 1.38819 * 120.00132 * 209.01992 * 23 22 2 26 26 N 1.31621 * 119.99857 * 15.01859 * 25 23 22 27 27 Si 1.86800 * 119.99838 * 195.01678 * 25 23 22 28 28 H 1.48496 * 109.47262 * 90.00061 * 27 25 23 29 29 H 1.48507 * 109.46611 * 210.00239 * 27 25 23 30 30 H 1.48503 * 109.47238 * 329.99875 * 27 25 23 31 31 H 1.08998 * 109.46957 * 180.28216 * 1 2 3 32 32 H 1.08999 * 109.46850 * 300.28681 * 1 2 3 33 33 H 1.09004 * 109.46594 * 60.28356 * 1 2 3 34 34 H 1.08999 * 109.49498 * 65.63067 * 4 2 1 35 35 H 1.08997 * 109.49726 * 305.53283 * 4 2 1 36 36 H 1.09005 * 109.45477 * 301.34602 * 5 4 2 37 37 H 1.09000 * 109.45286 * 181.38550 * 5 4 2 38 38 H 0.97006 * 120.00109 * 24.93465 * 8 6 5 39 39 H 1.07998 * 119.17284 * 0.27750 * 12 11 9 40 40 H 1.07998 * 120.02846 * 179.97438 * 13 12 11 41 41 H 1.08002 * 126.08595 * 179.97438 * 18 16 15 42 42 H 1.07999 * 120.32520 * 359.74369 * 20 11 9 43 43 H 1.09005 * 109.58197 * 174.40275 * 21 6 5 44 44 H 1.09000 * 109.58875 * 294.82853 * 21 6 5 45 45 H 0.96992 * 119.99690 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5675 -0.8467 -1.1712 6 6 3.9569 -1.6659 0.0614 7 1 3.4987 -2.6531 0.0017 8 7 5.4142 -1.8057 0.1153 9 6 5.9676 -2.8486 0.7652 10 8 5.2573 -3.6734 1.3072 11 6 7.4351 -2.9890 0.8199 12 6 8.2467 -2.0275 0.1826 13 6 9.5957 -2.1144 0.1995 14 6 10.2250 -3.1897 0.8675 15 7 11.4797 -3.5486 1.0611 16 7 11.5069 -4.7280 1.8132 17 1 12.3120 -5.1944 2.0876 18 6 10.2591 -5.1192 2.0974 19 6 9.3879 -4.2000 1.5356 20 6 7.9893 -4.0633 1.4903 21 6 3.4650 -0.9494 1.3229 22 7 2.0225 -0.7011 1.1936 23 6 1.1537 -1.1158 2.1674 24 1 0.1360 -1.3700 1.9103 25 6 1.5810 -1.2096 3.4848 26 7 2.7042 -0.6319 3.8550 27 14 0.5619 -2.1556 4.7321 28 1 0.9959 -3.5756 4.7511 29 1 0.7527 -1.5615 6.0798 30 1 -0.8731 -2.0815 4.3572 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3633 0.5183 0.8874 33 1 -0.3633 0.5095 -0.8926 34 1 1.7660 -0.1642 -2.1370 35 1 1.6029 -1.7237 -1.2934 36 1 4.0061 0.1486 -1.0991 37 1 3.9376 -1.3425 -2.0686 38 1 5.9808 -1.1475 -0.3169 39 1 7.7786 -1.2011 -0.3316 40 1 10.1919 -1.3635 -0.2976 41 1 9.9807 -5.9955 2.6640 42 1 7.3542 -4.7911 1.9733 43 1 3.6517 -1.5758 2.1952 44 1 3.9902 -0.0006 1.4326 45 1 3.0029 -0.6977 4.7754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071775447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:32 Heat of formation + Delta-G solvation = 80.045202 kcal Electronic energy + Delta-G solvation = -27712.969485 eV Core-core repulsion = 23925.472964 eV Total energy + Delta-G solvation = -3787.496521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49817 -39.54469 -37.73795 -36.59138 -34.36180 -32.76442 -32.32546 -31.31410 -30.33687 -29.77476 -29.00124 -26.11071 -25.09559 -24.23587 -22.87765 -22.15532 -20.90369 -20.66256 -19.97469 -19.22573 -18.40487 -17.40474 -16.79054 -16.34103 -15.57062 -15.20404 -15.11910 -14.47490 -14.23689 -14.10597 -13.99565 -13.73030 -13.68329 -13.30720 -13.22357 -12.93588 -12.66479 -12.31045 -11.88240 -11.76973 -11.67668 -11.37482 -11.06643 -10.82227 -10.67396 -10.55854 -10.51814 -10.42629 -10.33750 -10.19835 -9.90079 -9.69988 -9.38587 -9.30968 -9.02893 -8.44731 -8.34535 -7.78984 -6.54761 -5.67156 -3.11853 0.34696 1.38336 2.17341 2.39083 3.19453 3.46801 3.53256 3.54230 3.60021 4.03458 4.05853 4.34939 4.59193 4.84454 4.96513 5.03835 5.17781 5.31461 5.41814 5.43883 5.45345 5.57652 5.63992 5.74742 5.93973 6.03461 6.17267 6.23861 6.24580 6.32686 6.35884 6.40704 6.44714 6.51266 6.58183 6.60966 6.69054 6.74041 6.82256 7.04914 7.10013 7.18312 7.30641 7.41365 7.83651 7.92335 8.04667 8.56982 8.75813 9.31451 9.95756 10.50899 11.40665 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.003173 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.237190 B = 8823.603947 C =10171.251491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.117 3.883 7 H 0.082 0.918 8 N -0.717 5.717 9 C 0.557 3.443 10 O -0.535 6.535 11 C -0.167 4.167 12 C -0.047 4.047 13 C -0.115 4.115 14 C 0.119 3.881 15 N -0.313 5.313 16 N -0.426 5.426 17 H 0.444 0.556 18 C 0.101 3.899 19 C -0.218 4.218 20 C 0.032 3.968 21 C 0.168 3.832 22 N -0.584 5.584 23 C -0.252 4.252 24 H 0.070 0.930 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.391 0.609 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.193 0.807 42 H 0.141 0.859 43 H 0.096 0.904 44 H 0.016 0.984 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.272 -5.518 -8.541 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.100 0.900 8 N -0.367 5.367 9 C 0.344 3.656 10 O -0.413 6.413 11 C -0.172 4.172 12 C -0.070 4.070 13 C -0.136 4.136 14 C -0.036 4.036 15 N -0.141 5.141 16 N -0.125 5.125 17 H 0.288 0.712 18 C -0.058 4.058 19 C -0.228 4.228 20 C 0.010 3.990 21 C 0.041 3.959 22 N -0.307 5.307 23 C -0.382 4.382 24 H 0.088 0.912 25 C -0.193 4.193 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.214 1.214 29 H -0.219 1.219 30 H -0.205 1.205 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.225 0.775 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.210 0.790 42 H 0.159 0.841 43 H 0.114 0.886 44 H 0.034 0.966 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.049 -5.762 -8.215 18.928 hybrid contribution -0.416 -0.598 0.883 1.145 sum 15.633 -6.360 -7.331 18.401 Atomic orbital electron populations 1.21804 0.96063 1.01410 1.00114 1.20484 0.93016 0.93549 0.87121 0.95789 1.22044 0.94368 1.01296 0.98865 1.21685 0.97360 0.99645 0.96798 1.21978 0.77760 1.00867 0.98180 0.89995 1.45980 1.08531 1.26563 1.55645 1.18053 0.87135 0.81673 0.78740 1.90810 1.62994 1.42383 1.45113 1.19640 0.93396 0.98485 1.05688 1.20718 0.92992 0.97156 0.96105 1.19696 0.93791 0.97215 1.02861 1.21058 0.90072 0.95741 0.96687 1.77633 1.18300 0.99667 1.18481 1.46310 1.07693 1.19708 1.38761 0.71166 1.22879 0.84709 0.99399 0.98798 1.19582 0.94719 0.99071 1.09384 1.20701 0.91267 0.95157 0.91849 1.21105 0.83395 0.96949 0.94459 1.44033 1.02713 1.64621 1.19343 1.19153 0.94705 1.38127 0.86177 0.91218 1.25069 0.97729 0.99500 0.96997 1.69998 1.23279 1.44345 1.16803 0.86329 0.79718 0.80096 0.80850 1.21350 1.21881 1.20493 0.92786 0.92055 0.94387 0.92742 0.92085 0.92305 0.93073 0.77507 0.85211 0.85002 0.79005 0.84132 0.88599 0.96555 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.94 37.16 0.30 -2.28 16 2 C 0.16 3.40 3.50 -67.59 -0.24 3.16 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.15 5.37 -26.61 -0.14 -2.30 16 5 C -0.12 -1.89 5.35 -26.69 -0.14 -2.04 16 6 C 0.12 2.31 2.60 -67.81 -0.18 2.13 16 7 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 8 N -0.72 -11.97 5.03 -54.74 -0.28 -12.24 16 9 C 0.56 10.13 7.72 -12.48 -0.10 10.03 16 10 O -0.54 -12.07 15.92 5.28 0.08 -11.99 16 11 C -0.17 -2.45 5.86 -105.05 -0.62 -3.07 16 12 C -0.05 -0.56 9.39 -39.60 -0.37 -0.93 16 13 C -0.11 -1.33 10.05 -39.47 -0.40 -1.72 16 14 C 0.12 1.51 7.49 -82.98 -0.62 0.88 16 15 N -0.31 -3.71 12.69 33.30 0.42 -3.29 16 16 N -0.43 -3.29 7.17 30.87 0.22 -3.07 16 17 H 0.44 1.59 8.96 -182.74 -1.64 -0.05 16 18 C 0.10 0.79 12.09 -16.57 -0.20 0.59 16 19 C -0.22 -2.58 6.32 -105.24 -0.66 -3.24 16 20 C 0.03 0.43 9.64 -38.70 -0.37 0.06 16 21 C 0.17 4.11 4.86 -3.70 -0.02 4.09 16 22 N -0.58 -14.64 2.99 -164.76 -0.49 -15.14 16 23 C -0.25 -6.95 8.61 -15.06 -0.13 -7.08 16 24 H 0.07 1.87 6.20 -52.49 -0.33 1.55 16 25 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 26 N -0.90 -26.91 11.14 55.49 0.62 -26.29 16 27 Si 0.90 22.55 29.58 -169.99 -5.03 17.52 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 31 H 0.05 1.04 7.40 -51.93 -0.38 0.66 16 32 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.39 5.12 6.53 -40.82 -0.27 4.85 16 39 H 0.13 1.22 6.27 -52.49 -0.33 0.89 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.19 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.14 1.89 7.58 -52.49 -0.40 1.49 16 43 H 0.10 2.78 6.07 -51.93 -0.31 2.46 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -36.25 363.26 -10.34 -46.59 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.39 Total: 4.07 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -3.98 Total: -1.64 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.49 Total: -60.04 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.25 -10.34 -46.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.640 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds