Wall clock time and date at job start Tue Mar 31 2020 16:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58260 * 2 1 4 4 C 1.53191 * 109.58773 * 120.27721 * 2 1 3 5 5 C 1.53042 * 109.31437 * 174.56860 * 4 2 1 6 6 C 1.53047 * 109.53404 * 298.63683 * 5 4 2 7 7 H 1.09001 * 109.49718 * 301.41172 * 6 5 4 8 8 N 1.46501 * 109.49459 * 181.31340 * 6 5 4 9 9 C 1.34781 * 119.99754 * 154.99776 * 8 6 5 10 10 O 1.21601 * 119.99810 * 0.02562 * 9 8 6 11 11 C 1.47511 * 119.99862 * 180.02562 * 9 8 6 12 12 C 1.41047 * 119.39466 * 359.97438 * 11 9 8 13 13 C 1.35183 * 121.65545 * 179.97438 * 12 11 9 14 14 C 1.41376 * 119.93169 * 0.02562 * 13 12 11 15 15 N 1.31935 * 134.39866 * 179.97438 * 14 13 12 16 16 N 1.39911 * 109.06314 * 179.97438 * 15 14 13 17 17 H 0.96999 * 124.98375 * 179.97438 * 16 15 14 18 18 C 1.33820 * 110.03148 * 0.02562 * 16 15 14 19 19 C 1.38540 * 107.83633 * 359.97438 * 18 16 15 20 20 C 1.38222 * 119.39312 * 179.72942 * 11 9 8 21 21 C 1.53189 * 109.31332 * 61.36475 * 6 5 4 22 22 N 1.46920 * 109.58934 * 239.71289 * 2 1 3 23 23 C 1.36940 * 120.63146 * 6.46825 * 22 2 1 24 24 H 1.08008 * 119.99359 * 331.06885 * 23 22 2 25 25 C 1.38810 * 120.00700 * 151.07078 * 23 22 2 26 26 N 1.31615 * 120.00193 * 160.80709 * 25 23 22 27 27 Si 1.86806 * 119.99569 * 340.80720 * 25 23 22 28 28 H 1.48500 * 109.47035 * 92.35132 * 27 25 23 29 29 H 1.48496 * 109.46873 * 212.35381 * 27 25 23 30 30 H 1.48507 * 109.47127 * 332.35620 * 27 25 23 31 31 H 1.09005 * 109.47731 * 299.99915 * 1 2 3 32 32 H 1.09003 * 109.47690 * 60.00161 * 1 2 3 33 33 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.49827 * 294.52087 * 4 2 1 35 35 H 1.09002 * 109.49658 * 54.61666 * 4 2 1 36 36 H 1.08997 * 109.45974 * 58.65498 * 5 4 2 37 37 H 1.08998 * 109.46199 * 178.61865 * 5 4 2 38 38 H 0.96999 * 120.00178 * 335.00896 * 8 6 5 39 39 H 1.07999 * 119.17096 * 359.96209 * 12 11 9 40 40 H 1.07998 * 120.03584 * 179.97438 * 13 12 11 41 41 H 1.07998 * 126.08222 * 179.97438 * 18 16 15 42 42 H 1.08000 * 120.32415 * 0.02562 * 20 11 9 43 43 H 1.09005 * 109.58795 * 65.15337 * 21 6 5 44 44 H 1.08994 * 109.58758 * 185.43527 * 21 6 5 45 45 H 0.97005 * 119.99195 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5037 -2.6487 -0.0016 8 7 5.4181 -1.7973 -0.1120 9 6 5.9744 -2.8393 -0.7610 10 8 5.2664 -3.6658 -1.3035 11 6 7.4421 -2.9772 -0.8131 12 6 8.2512 -2.0108 -0.1799 13 6 9.6004 -2.0925 -0.1987 14 6 10.2328 -3.1668 -0.8656 15 7 11.4886 -3.5213 -1.0605 16 7 11.5189 -4.7027 -1.8093 17 1 12.3254 -5.1662 -2.0845 18 6 10.2722 -5.0989 -2.0912 19 6 9.3984 -4.1819 -1.5301 20 6 7.9992 -4.0538 -1.4773 21 6 3.4685 -0.9436 -1.3209 22 7 2.0225 -0.6981 -1.1952 23 6 1.1534 -1.1130 -2.1688 24 1 0.1360 -1.3682 -1.9112 25 6 1.5799 -1.2055 -3.4865 26 7 0.9061 -1.9397 -4.3462 27 14 3.1101 -0.2878 -4.0395 28 1 4.2939 -1.1746 -3.9072 29 1 2.9553 0.1229 -5.4581 30 1 3.2976 0.9176 -3.1926 31 1 -0.3635 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.7637 -0.1652 2.1372 35 1 1.6049 -1.7245 1.2923 36 1 4.0045 0.1530 1.1022 37 1 3.9381 -1.3388 2.0704 38 1 5.9828 -1.1379 0.3206 39 1 7.7809 -1.1847 0.3327 40 1 10.1946 -1.3376 0.2946 41 1 9.9962 -5.9773 -2.6557 42 1 7.3661 -4.7873 -1.9542 43 1 3.9920 0.0065 -1.4288 44 1 3.6599 -1.5673 -2.1941 45 1 1.2040 -2.0040 -5.2672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071775448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:36 Heat of formation + Delta-G solvation = 85.324476 kcal Electronic energy + Delta-G solvation = -27846.986735 eV Core-core repulsion = 24059.719140 eV Total energy + Delta-G solvation = -3787.267595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58612 -39.75643 -38.00721 -36.72851 -34.56178 -32.77123 -32.42121 -31.44347 -30.62838 -30.42806 -29.12688 -26.31767 -25.08025 -24.32173 -23.05920 -22.55737 -20.99489 -20.78380 -20.25044 -19.30041 -18.49247 -17.59501 -16.89806 -16.48448 -15.87134 -15.30445 -15.23483 -14.61744 -14.51119 -14.33769 -14.21373 -14.04796 -13.69331 -13.44414 -13.33366 -13.03837 -12.96045 -12.38592 -12.07149 -11.94443 -11.79581 -11.64657 -11.38232 -11.21543 -10.73693 -10.66941 -10.64335 -10.59458 -10.31549 -10.21457 -9.96430 -9.62186 -9.58775 -9.31945 -9.12775 -8.77559 -8.43007 -7.89131 -6.85092 -5.84785 -3.22252 0.25459 1.27297 2.08393 2.31463 3.05765 3.39422 3.46340 3.55446 3.57815 3.89414 3.95471 4.27054 4.64006 4.74932 4.82997 4.91668 5.04284 5.07587 5.15319 5.28683 5.32114 5.35448 5.51698 5.56540 5.80595 5.84333 5.98485 6.05591 6.14286 6.15344 6.18177 6.26419 6.28813 6.32189 6.39166 6.50284 6.52768 6.59427 6.66089 6.68221 6.74705 6.93730 7.04943 7.14206 7.22170 7.82614 8.06608 8.45101 8.56662 9.02948 9.82872 10.19349 11.30874 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.003311 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.734289 B = 8454.474607 C = 9435.952245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.029 0.971 4 C -0.127 4.127 5 C -0.117 4.117 6 C 0.127 3.873 7 H 0.092 0.908 8 N -0.722 5.722 9 C 0.555 3.445 10 O -0.531 6.531 11 C -0.172 4.172 12 C -0.049 4.049 13 C -0.113 4.113 14 C 0.119 3.881 15 N -0.312 5.312 16 N -0.425 5.425 17 H 0.445 0.555 18 C 0.104 3.896 19 C -0.219 4.219 20 C 0.035 3.965 21 C 0.120 3.880 22 N -0.598 5.598 23 C -0.260 4.260 24 H 0.092 0.908 25 C 0.029 3.971 26 N -0.907 5.907 27 Si 0.878 3.122 28 H -0.287 1.287 29 H -0.305 1.305 30 H -0.272 1.272 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.393 0.607 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.194 0.806 42 H 0.142 0.858 43 H 0.023 0.977 44 H 0.079 0.921 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.079 -2.710 10.323 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.155 4.155 6 C 0.021 3.979 7 H 0.110 0.890 8 N -0.374 5.374 9 C 0.342 3.658 10 O -0.408 6.408 11 C -0.177 4.177 12 C -0.071 4.071 13 C -0.134 4.134 14 C -0.036 4.036 15 N -0.140 5.140 16 N -0.124 5.124 17 H 0.289 0.711 18 C -0.055 4.055 19 C -0.229 4.229 20 C 0.014 3.986 21 C -0.006 4.006 22 N -0.322 5.322 23 C -0.388 4.388 24 H 0.110 0.890 25 C -0.170 4.170 26 N -0.550 5.550 27 Si 0.709 3.291 28 H -0.214 1.214 29 H -0.233 1.233 30 H -0.197 1.197 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.227 0.773 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.211 0.789 42 H 0.160 0.840 43 H 0.041 0.959 44 H 0.097 0.903 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 19.758 -3.026 9.990 22.346 hybrid contribution 0.925 0.302 -0.645 1.167 sum 20.683 -2.724 9.345 22.860 Atomic orbital electron populations 1.21813 0.95263 1.01978 1.00391 1.20503 0.93692 0.93357 0.86206 0.95303 1.22048 0.94099 1.01744 0.98823 1.21691 0.97568 0.99583 0.96663 1.21750 0.77945 1.01263 0.96912 0.88967 1.46035 1.08360 1.26920 1.56062 1.18138 0.87333 0.81600 0.78698 1.90842 1.63138 1.41967 1.44831 1.19591 0.93156 0.98658 1.06278 1.20694 0.93046 0.97171 0.96226 1.19696 0.93727 0.97223 1.02764 1.21064 0.90099 0.95725 0.96670 1.77645 1.18214 0.99577 1.18519 1.46324 1.07744 1.19550 1.38743 0.71081 1.22902 0.84689 0.99308 0.98611 1.19577 0.94670 0.99109 1.09562 1.20725 0.91339 0.95082 0.91499 1.21740 0.85413 0.96904 0.96583 1.44429 1.01583 1.65483 1.20741 1.18898 0.95567 1.38672 0.85623 0.89028 1.25278 0.97310 0.98573 0.95876 1.69818 1.41246 1.39330 1.04632 0.86995 0.84032 0.81277 0.76811 1.21408 1.23317 1.19700 0.94146 0.91739 0.92355 0.92222 0.91589 0.92151 0.92387 0.77261 0.85241 0.84932 0.78897 0.84020 0.95868 0.90308 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.94 37.16 0.30 -2.22 16 2 C 0.17 3.27 3.49 -67.61 -0.24 3.03 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.03 5.37 -26.61 -0.14 -2.17 16 5 C -0.12 -1.73 5.35 -26.68 -0.14 -1.87 16 6 C 0.13 2.34 2.61 -67.81 -0.18 2.16 16 7 H 0.09 1.96 7.58 -51.93 -0.39 1.57 16 8 N -0.72 -11.29 5.03 -54.73 -0.28 -11.57 16 9 C 0.56 9.69 7.72 -12.48 -0.10 9.59 16 10 O -0.53 -11.67 15.92 5.28 0.08 -11.59 16 11 C -0.17 -2.41 5.86 -105.06 -0.62 -3.03 16 12 C -0.05 -0.54 9.39 -39.60 -0.37 -0.91 16 13 C -0.11 -1.23 10.05 -39.48 -0.40 -1.63 16 14 C 0.12 1.44 7.49 -82.97 -0.62 0.82 16 15 N -0.31 -3.55 12.69 33.31 0.42 -3.12 16 16 N -0.42 -3.10 7.17 30.87 0.22 -2.88 16 17 H 0.44 1.41 8.96 -182.74 -1.64 -0.23 16 18 C 0.10 0.76 12.09 -16.57 -0.20 0.56 16 19 C -0.22 -2.49 6.32 -105.23 -0.66 -3.15 16 20 C 0.04 0.46 9.64 -38.70 -0.37 0.09 16 21 C 0.12 2.74 3.78 -3.56 -0.01 2.73 16 22 N -0.60 -14.34 2.76 -164.56 -0.45 -14.80 16 23 C -0.26 -7.32 9.05 -15.06 -0.14 -7.45 16 24 H 0.09 2.70 6.39 -52.48 -0.34 2.36 16 25 C 0.03 0.86 5.25 -17.43 -0.09 0.77 16 26 N -0.91 -28.71 13.97 55.49 0.78 -27.93 16 27 Si 0.88 23.57 24.35 -169.99 -4.14 19.43 16 28 H -0.29 -7.77 6.62 56.52 0.37 -7.39 16 29 H -0.30 -8.26 7.11 56.52 0.40 -7.86 16 30 H -0.27 -7.06 6.62 56.52 0.37 -6.69 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.29 7.64 -51.93 -0.40 0.90 16 33 H 0.06 1.13 7.42 -51.93 -0.39 0.74 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.39 4.62 6.53 -40.82 -0.27 4.35 16 39 H 0.13 1.09 6.27 -52.49 -0.33 0.76 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.19 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.14 1.84 7.58 -52.49 -0.40 1.44 16 43 H 0.02 0.52 7.04 -51.93 -0.37 0.16 16 44 H 0.08 2.10 4.62 -51.93 -0.24 1.86 16 45 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -37.95 356.96 -9.29 -47.24 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.32 Total: 2.52 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -3.98 Total: -2.69 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.69 Total: -60.29 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.14 Total: 19.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.95 -9.29 -47.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.567 kcal (2) G-P(sol) polarization free energy of solvation -37.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds