Wall clock time and date at job start Tue Mar 31 2020 16:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.58031 * 2 1 4 4 C 1.53193 * 109.58507 * 120.28054 * 2 1 3 5 5 C 1.53040 * 109.31053 * 174.56722 * 4 2 1 6 6 C 1.53042 * 109.53618 * 298.63493 * 5 4 2 7 7 H 1.09000 * 109.49971 * 301.41342 * 6 5 4 8 8 N 1.46499 * 109.49709 * 181.31792 * 6 5 4 9 9 C 1.34785 * 120.00064 * 154.99970 * 8 6 5 10 10 O 1.21587 * 119.99586 * 359.97438 * 9 8 6 11 11 C 1.47572 * 119.99986 * 179.97438 * 9 8 6 12 12 C 1.41758 * 120.01292 * 0.02562 * 11 9 8 13 13 C 1.35630 * 119.53907 * 180.02562 * 12 11 9 14 14 C 1.41175 * 119.50812 * 359.97438 * 13 12 11 15 15 N 1.32420 * 132.12088 * 179.97438 * 14 13 12 16 16 C 1.33596 * 109.22369 * 180.02562 * 15 14 13 17 17 C 1.34995 * 108.66120 * 359.97438 * 16 15 14 18 18 N 1.37008 * 107.14126 * 0.02562 * 17 16 15 19 19 C 1.35916 * 132.41178 * 180.30080 * 18 17 16 20 20 C 1.53193 * 109.31158 * 61.36549 * 6 5 4 21 21 N 1.46924 * 109.58656 * 239.71459 * 2 1 3 22 22 C 1.36937 * 120.63244 * 6.46907 * 21 2 1 23 23 H 1.08006 * 119.99815 * 330.33431 * 22 21 2 24 24 C 1.38810 * 120.00613 * 150.33258 * 22 21 2 25 25 N 1.31624 * 119.99291 * 344.65523 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.65155 * 24 22 21 27 27 H 1.48503 * 109.46740 * 60.00215 * 26 24 22 28 28 H 1.48497 * 109.46946 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.46995 * 300.00326 * 26 24 22 30 30 H 1.09003 * 109.47161 * 300.00505 * 1 2 3 31 31 H 1.09007 * 109.47280 * 59.99978 * 1 2 3 32 32 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.49791 * 294.51700 * 4 2 1 34 34 H 1.08997 * 109.49719 * 54.61759 * 4 2 1 35 35 H 1.08997 * 109.46117 * 58.65425 * 5 4 2 36 36 H 1.08997 * 109.46315 * 178.61842 * 5 4 2 37 37 H 0.97001 * 120.00307 * 334.99601 * 8 6 5 38 38 H 1.08000 * 120.23171 * 359.97438 * 12 11 9 39 39 H 1.08003 * 120.24428 * 179.97438 * 13 12 11 40 40 H 1.07998 * 125.66913 * 179.97438 * 16 15 14 41 41 H 1.07999 * 126.42748 * 180.02562 * 17 16 15 42 42 H 1.08004 * 119.75873 * 359.96542 * 19 18 17 43 43 H 1.09000 * 109.58622 * 65.15805 * 20 6 5 44 44 H 1.09005 * 109.58332 * 185.43469 * 20 6 5 45 45 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5678 -0.8432 1.1730 6 6 3.9603 -1.6608 -0.0598 7 1 3.5037 -2.6488 -0.0017 8 7 5.4180 -1.7974 -0.1121 9 6 5.9743 -2.8395 -0.7611 10 8 5.2664 -3.6663 -1.3029 11 6 7.4427 -2.9768 -0.8142 12 6 8.2683 -2.0133 -0.1822 13 6 9.6167 -2.1486 -0.2375 14 6 10.1777 -3.2477 -0.9233 15 7 11.4318 -3.6188 -1.1310 16 6 11.4439 -4.7461 -1.8478 17 6 10.1692 -5.1077 -2.1058 18 7 9.3577 -4.1679 -1.5266 19 6 8.0064 -4.0355 -1.4662 20 6 3.4685 -0.9435 -1.3210 21 7 2.0225 -0.6981 -1.1953 22 6 1.1534 -1.1129 -2.1688 23 1 0.1394 -1.3795 -1.9095 24 6 1.5755 -1.1907 -3.4889 25 7 2.6878 -0.5931 -3.8604 26 14 0.5650 -2.1436 -4.7380 27 1 -0.7939 -1.5518 -4.8302 28 1 1.2265 -2.0748 -6.0657 29 1 0.4594 -3.5619 -4.3109 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7638 -0.1653 2.1372 34 1 1.6050 -1.7245 1.2922 35 1 4.0045 0.1529 1.1022 36 1 3.9381 -1.3390 2.0703 37 1 5.9828 -1.1380 0.3204 38 1 7.8267 -1.1767 0.3390 39 1 10.2565 -1.4210 0.2397 40 1 12.3268 -5.2795 -2.1676 41 1 9.8490 -5.9751 -2.6640 42 1 7.3739 -4.7707 -1.9416 43 1 3.9920 0.0064 -1.4288 44 1 3.6598 -1.5673 -2.1942 45 1 2.9826 -0.6471 -4.7830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071983132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:03 Heat of formation + Delta-G solvation = 78.982845 kcal Electronic energy + Delta-G solvation = -27845.321736 eV Core-core repulsion = 24057.779147 eV Total energy + Delta-G solvation = -3787.542589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.01895 -39.84885 -37.90459 -36.88668 -34.65472 -33.86591 -32.83418 -31.28905 -30.19568 -29.78213 -28.96974 -26.22129 -25.16735 -24.09982 -23.31625 -22.30802 -21.97734 -20.99052 -20.25901 -19.36166 -18.27482 -17.34522 -16.71773 -16.41764 -16.13972 -15.64395 -15.33188 -14.81123 -14.72291 -14.39366 -14.10035 -13.88219 -13.82783 -13.62281 -13.39216 -13.25180 -12.81971 -12.44165 -11.97820 -11.94095 -11.87413 -11.48373 -11.29046 -11.14440 -10.92434 -10.71627 -10.58154 -10.43682 -10.37932 -10.30165 -10.01832 -9.90935 -9.55265 -9.50808 -9.10215 -8.64201 -8.44276 -8.11373 -6.63079 -5.76390 -3.20919 0.38902 0.86021 2.24934 2.43759 3.02815 3.34356 3.41844 3.47002 3.48783 3.59441 3.96326 4.32070 4.45289 4.51950 4.63298 4.70045 5.07375 5.13259 5.21928 5.30465 5.33570 5.44665 5.53233 5.58942 5.62768 5.73327 5.80436 5.92510 6.05935 6.15953 6.23775 6.26286 6.35795 6.36177 6.41652 6.44316 6.59360 6.68307 6.74110 6.82779 7.02166 7.10238 7.26495 7.59865 7.68682 7.74575 7.84826 8.41406 8.48548 9.21967 9.86326 10.42249 11.32031 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.003219 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.143481 B = 8697.251986 C =10041.563369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.117 3.883 7 H 0.084 0.916 8 N -0.709 5.709 9 C 0.565 3.435 10 O -0.528 6.528 11 C -0.152 4.152 12 C -0.076 4.076 13 C -0.085 4.085 14 C 0.230 3.770 15 N -0.495 5.495 16 C 0.031 3.969 17 C -0.095 4.095 18 N -0.366 5.366 19 C 0.129 3.871 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.254 4.254 23 H 0.070 0.930 24 C 0.008 3.992 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.393 0.607 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.183 0.817 41 H 0.186 0.814 42 H 0.180 0.820 43 H 0.018 0.982 44 H 0.093 0.907 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.292 -3.663 9.652 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.103 0.897 8 N -0.359 5.359 9 C 0.350 3.650 10 O -0.405 6.405 11 C -0.158 4.158 12 C -0.100 4.100 13 C -0.105 4.105 14 C -0.014 4.014 15 N -0.215 5.215 16 C -0.119 4.119 17 C -0.225 4.225 18 N -0.038 5.038 19 C 0.004 3.996 20 C 0.041 3.959 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.227 0.773 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.200 0.800 41 H 0.203 0.797 42 H 0.197 0.803 43 H 0.036 0.964 44 H 0.111 0.889 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.526 -3.892 9.304 16.081 hybrid contribution -0.749 -0.641 -0.921 1.349 sum 11.776 -4.533 8.383 15.149 Atomic orbital electron populations 1.21803 0.95981 1.01405 1.00218 1.20496 0.93108 0.93587 0.87020 0.95722 1.22048 0.94177 1.01386 0.98986 1.21687 0.97537 0.99664 0.96600 1.22069 0.77060 1.01173 0.98533 0.89741 1.45940 1.08898 1.26090 1.54992 1.17583 0.85887 0.82220 0.79334 1.90853 1.62692 1.42073 1.44871 1.19539 0.95142 0.96965 1.04148 1.21113 0.92668 0.98317 0.97913 1.20146 0.94755 0.95758 0.99879 1.21164 0.86078 0.93808 1.00309 1.70742 1.16727 1.14238 1.19775 1.22542 0.96261 0.94331 0.98752 1.22806 0.90435 0.99073 1.10170 1.42835 1.06035 1.19679 1.35266 1.21748 0.81515 0.99046 0.97332 1.21112 0.83681 0.96943 0.94175 1.44052 1.02494 1.64794 1.19261 1.19083 0.95023 1.38247 0.85986 0.91265 1.25080 0.97778 0.99254 0.97039 1.69991 1.23996 1.43654 1.16774 0.86406 0.79506 0.80417 0.80660 1.20896 1.21696 1.20920 0.94347 0.91979 0.92802 0.92587 0.92035 0.92168 0.92967 0.77273 0.83566 0.82622 0.80045 0.79736 0.80318 0.96361 0.88889 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.95 37.16 0.30 -2.20 16 2 C 0.16 3.25 3.49 -67.60 -0.24 3.02 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.04 5.37 -26.61 -0.14 -2.18 16 5 C -0.12 -1.75 5.35 -26.69 -0.14 -1.89 16 6 C 0.12 2.13 2.61 -67.81 -0.18 1.95 16 7 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 8 N -0.71 -10.60 5.03 -54.72 -0.28 -10.87 16 9 C 0.56 9.20 7.73 -12.45 -0.10 9.10 16 10 O -0.53 -10.88 15.94 5.29 0.08 -10.79 16 11 C -0.15 -1.96 5.84 -105.37 -0.61 -2.58 16 12 C -0.08 -0.77 9.53 -39.17 -0.37 -1.15 16 13 C -0.09 -0.89 10.09 -39.40 -0.40 -1.29 16 14 C 0.23 2.95 7.81 -155.93 -1.22 1.74 16 15 N -0.50 -6.59 11.31 -12.72 -0.14 -6.73 16 16 C 0.03 0.33 11.82 -17.94 -0.21 0.12 16 17 C -0.10 -0.97 11.75 -16.39 -0.19 -1.16 16 18 N -0.37 -4.48 2.93 -62.31 -0.18 -4.67 16 19 C 0.13 1.62 10.49 -16.37 -0.17 1.45 16 20 C 0.17 3.90 4.87 -3.56 -0.02 3.88 16 21 N -0.58 -14.09 3.00 -164.55 -0.49 -14.58 16 22 C -0.25 -6.81 8.58 -15.06 -0.13 -6.94 16 23 H 0.07 1.81 6.23 -52.48 -0.33 1.48 16 24 C 0.01 0.21 4.95 -17.43 -0.09 0.13 16 25 N -0.90 -26.25 11.23 55.49 0.62 -25.63 16 26 Si 0.90 22.07 29.58 -169.99 -5.03 17.04 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.23 7.65 -51.92 -0.40 0.84 16 32 H 0.05 1.00 7.42 -51.93 -0.39 0.62 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 4.41 6.64 -40.82 -0.27 4.14 16 38 H 0.15 1.05 6.44 -52.49 -0.34 0.71 16 39 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.18 2.13 7.56 -52.48 -0.40 1.74 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 2.57 6.16 -51.93 -0.32 2.25 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -34.01 363.72 -10.04 -44.05 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.19 Total: 4.71 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -3.91 Total: 1.99 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -0.47 Total: -62.48 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.01 -10.04 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071983132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.031 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds