Wall clock time and date at job start Tue Mar 31 2020 14:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47282 * 2 1 4 4 H 1.09002 * 109.86944 * 301.83852 * 3 2 1 5 5 C 1.54316 * 109.88142 * 180.82249 * 3 2 1 6 6 H 1.08996 * 110.72322 * 336.76969 * 5 3 2 7 7 N 1.46499 * 110.72343 * 99.87193 * 5 3 2 8 8 C 1.34776 * 120.00057 * 204.99826 * 7 5 3 9 9 O 1.21647 * 120.00273 * 359.97438 * 8 7 5 10 10 C 1.47074 * 120.00064 * 179.97438 * 8 7 5 11 11 C 1.35902 * 125.42273 * 179.97438 * 10 8 7 12 12 C 1.41433 * 107.67361 * 180.02562 * 11 10 8 13 13 C 1.39834 * 134.34879 * 179.97438 * 12 11 10 14 14 N 1.31560 * 120.04438 * 180.02562 * 13 12 11 15 15 C 1.32367 * 122.31516 * 0.02562 * 14 13 12 16 16 C 1.36636 * 121.65165 * 0.02562 * 15 14 13 17 17 C 1.39444 * 119.00625 * 359.97438 * 16 15 14 18 18 N 1.36876 * 134.32103 * 179.68456 * 17 16 15 19 19 H 0.96999 * 125.59208 * 0.02827 * 18 17 16 20 20 C 1.55160 * 102.94154 * 218.23431 * 5 3 2 21 21 C 1.54915 * 101.58036 * 35.49916 * 20 5 3 22 22 N 1.47014 * 110.01004 * 62.93089 * 3 2 1 23 23 C 1.36938 * 125.65338 * 298.46472 * 22 3 2 24 24 H 1.07994 * 119.99580 * 340.68385 * 23 22 3 25 25 C 1.38812 * 120.00092 * 160.67612 * 23 22 3 26 26 N 1.31612 * 119.99852 * 159.92245 * 25 23 22 27 27 Si 1.86803 * 120.00066 * 339.91965 * 25 23 22 28 28 H 1.48504 * 109.46956 * 84.86585 * 27 25 23 29 29 H 1.48500 * 109.47258 * 204.86160 * 27 25 23 30 30 H 1.48494 * 109.47096 * 324.86960 * 27 25 23 31 31 H 1.09003 * 109.47086 * 172.10184 * 1 2 3 32 32 H 1.08995 * 109.46929 * 292.10019 * 1 2 3 33 33 H 1.09001 * 109.47233 * 52.10183 * 1 2 3 34 34 H 1.09002 * 109.46937 * 239.99723 * 2 1 3 35 35 H 1.09001 * 109.47060 * 120.00037 * 2 1 3 36 36 H 0.97001 * 119.99954 * 24.99686 * 7 5 3 37 37 H 1.08004 * 126.16602 * 0.02562 * 11 10 8 38 38 H 1.08003 * 119.97868 * 0.06961 * 13 12 11 39 39 H 1.07999 * 119.17084 * 180.02562 * 15 14 13 40 40 H 1.07992 * 120.49817 * 180.02562 * 16 15 14 41 41 H 1.08997 * 111.00843 * 153.57526 * 20 5 3 42 42 H 1.08998 * 111.00304 * 277.42747 * 20 5 3 43 43 H 1.08999 * 110.36332 * 204.14940 * 21 20 5 44 44 H 1.08995 * 110.36410 * 81.83204 * 21 20 5 45 45 H 0.97004 * 119.99766 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6537 1.9720 -0.8709 5 6 3.5830 1.4535 -0.0208 6 1 3.9808 0.5176 0.3714 7 7 4.0814 1.6986 -1.3765 8 6 5.3077 1.2670 -1.7319 9 8 6.0010 0.6743 -0.9269 10 6 5.8079 1.5125 -3.0930 11 6 7.0220 1.1282 -3.5673 12 6 7.1119 1.5544 -4.9129 13 6 8.0916 1.4566 -5.9059 14 7 7.8745 1.9688 -7.0981 15 6 6.7459 2.5871 -7.4078 16 6 5.7344 2.7302 -6.5004 17 6 5.8987 2.2102 -5.2170 18 7 5.1207 2.1781 -4.0913 19 1 4.2319 2.5575 -4.0084 20 6 3.9347 2.6393 0.9160 21 6 2.8152 2.5362 1.9818 22 7 1.6151 2.1263 1.2301 23 6 0.3192 2.3457 1.6144 24 1 -0.4756 2.2989 0.8847 25 6 0.0272 2.6280 2.9417 26 7 -1.1077 3.2163 3.2551 27 14 1.2448 2.1728 4.2832 28 1 2.2555 3.2521 4.4214 29 1 0.5232 2.0028 5.5699 30 1 1.9239 0.9018 3.9248 31 1 -0.3633 -1.0179 -0.1412 32 1 -0.3633 0.3866 0.9521 33 1 -0.3634 0.6313 -0.8109 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5288 2.1715 -2.0183 37 1 7.7815 0.5935 -3.0161 38 1 9.0268 0.9595 -5.6942 39 1 6.6214 2.9884 -8.4027 40 1 4.8211 3.2378 -6.7732 41 1 4.9175 2.5027 1.3672 42 1 3.8800 3.5882 0.3826 43 1 2.6534 3.5038 2.4568 44 1 3.0704 1.7842 2.7284 45 1 -1.3115 3.4139 4.1827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087624740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:33 Heat of formation + Delta-G solvation = 39.653055 kcal Electronic energy + Delta-G solvation = -27553.219525 eV Core-core repulsion = 23763.971469 eV Total energy + Delta-G solvation = -3789.248056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.89410 -41.09672 -39.67195 -38.73947 -35.84263 -34.24394 -33.96930 -33.40930 -31.96094 -31.09043 -30.25537 -28.74454 -26.60277 -25.21908 -23.94961 -23.86355 -22.93886 -22.01750 -21.65035 -20.99932 -19.71926 -18.93040 -18.63227 -17.68850 -17.02757 -16.67368 -16.53071 -16.48906 -16.12139 -15.50363 -15.45373 -15.31776 -15.14209 -14.84982 -14.70180 -14.58805 -14.14668 -14.10522 -13.87691 -13.75921 -13.55943 -13.08179 -13.03588 -12.62999 -12.47049 -12.41317 -12.03351 -11.98560 -11.74814 -11.59423 -11.42023 -11.20187 -11.13756 -10.74887 -10.52637 -10.25099 -9.88070 -9.04009 -9.00604 -8.12507 -5.39132 -0.42396 0.51057 0.93497 1.30163 1.40223 1.45612 1.67219 1.88904 2.16401 2.43181 2.95067 3.07788 3.25940 3.51941 3.57317 3.60236 3.69338 3.70932 3.95180 4.06765 4.09310 4.20560 4.25467 4.35088 4.40921 4.53527 4.56977 4.63398 4.73538 4.80577 4.85728 4.89911 4.93711 4.98471 5.03387 5.09746 5.16214 5.24122 5.30778 5.45520 5.51032 5.65681 5.76838 5.80406 6.15632 6.20842 6.38411 6.77546 6.94796 7.12041 7.57002 8.11352 9.06579 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024763 B = 0.002615 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.436674 B =10705.219133 C =11054.898164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.060 0.940 5 C 0.148 3.852 6 H 0.094 0.906 7 N -0.698 5.698 8 C 0.589 3.411 9 O -0.555 6.555 10 C 0.010 3.990 11 C -0.091 4.091 12 C -0.193 4.193 13 C 0.173 3.827 14 N -0.529 5.529 15 C 0.098 3.902 16 C -0.179 4.179 17 C 0.134 3.866 18 N -0.558 5.558 19 H 0.434 0.566 20 C -0.127 4.127 21 C 0.101 3.899 22 N -0.614 5.614 23 C -0.201 4.201 24 H 0.079 0.921 25 C -0.038 4.038 26 N -0.958 5.958 27 Si 0.932 3.068 28 H -0.276 1.276 29 H -0.316 1.316 30 H -0.271 1.271 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.411 0.589 37 H 0.167 0.833 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.161 0.839 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.022 0.978 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.580 -2.166 -20.591 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.051 3.949 4 H 0.078 0.922 5 C 0.043 3.957 6 H 0.112 0.888 7 N -0.349 5.349 8 C 0.376 3.624 9 O -0.432 6.432 10 C -0.099 4.099 11 C -0.119 4.119 12 C -0.200 4.200 13 C 0.005 3.995 14 N -0.239 5.239 15 C -0.050 4.050 16 C -0.202 4.202 17 C 0.015 3.985 18 N -0.163 5.163 19 H 0.275 0.725 20 C -0.167 4.167 21 C -0.024 4.024 22 N -0.340 5.340 23 C -0.330 4.330 24 H 0.097 0.903 25 C -0.232 4.232 26 N -0.606 5.606 27 Si 0.763 3.237 28 H -0.202 1.202 29 H -0.246 1.246 30 H -0.196 1.196 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.247 0.753 37 H 0.184 0.816 38 H 0.198 0.802 39 H 0.200 0.800 40 H 0.179 0.821 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.296 -2.491 -20.492 26.300 hybrid contribution -1.420 0.320 1.866 2.367 sum 14.876 -2.170 -18.626 23.936 Atomic orbital electron populations 1.21846 0.95969 1.00314 1.02415 1.21870 0.96585 0.96795 1.00870 1.21315 0.90988 0.92587 0.90031 0.92222 1.21842 0.93296 0.98940 0.81652 0.88794 1.45674 1.16693 1.58405 1.14142 1.17280 0.81340 0.78399 0.85351 1.90855 1.57573 1.42855 1.51955 1.19996 0.95267 1.05503 0.89175 1.21056 0.96109 1.01427 0.93283 1.19367 0.97208 1.07074 0.96384 1.22882 0.97728 0.92593 0.86259 1.67730 1.23771 1.12150 1.20290 1.22614 0.87673 0.94310 1.00355 1.21114 1.03484 1.05395 0.90157 1.18658 0.91457 0.98978 0.89407 1.41777 1.17742 1.48544 1.08285 0.72518 1.23049 0.97909 0.99048 0.96650 1.22048 0.87450 0.97781 0.95141 1.44870 1.01023 1.65422 1.22676 1.18555 0.83060 1.38804 0.92582 0.90330 1.25493 0.97525 1.01274 0.98900 1.69903 1.26812 1.45613 1.18262 0.86197 0.78808 0.79355 0.79323 1.20243 1.24563 1.19615 0.93015 0.92815 0.93393 0.90680 0.93836 0.75262 0.81573 0.80205 0.80020 0.82136 0.89822 0.89604 0.93519 0.96044 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 8.73 71.98 0.63 -4.54 16 2 C -0.12 -3.91 5.50 30.59 0.17 -3.74 16 3 C 0.16 5.15 3.03 45.34 0.14 5.29 16 4 H 0.06 1.82 7.72 -2.39 -0.02 1.80 16 5 C 0.15 4.18 2.84 46.18 0.13 4.31 16 6 H 0.09 2.91 7.25 -2.39 -0.02 2.89 16 7 N -0.70 -14.75 5.17 -440.51 -2.28 -17.03 16 8 C 0.59 13.83 7.80 86.56 0.68 14.51 16 9 O -0.55 -17.12 16.48 -4.18 -0.07 -17.19 16 10 C 0.01 0.19 6.97 39.91 0.28 0.47 16 11 C -0.09 -1.71 10.53 22.51 0.24 -1.47 16 12 C -0.19 -3.43 6.21 -21.37 -0.13 -3.56 16 13 C 0.17 2.80 11.29 85.12 0.96 3.77 16 14 N -0.53 -9.30 10.33 -195.62 -2.02 -11.32 16 15 C 0.10 1.30 11.09 84.24 0.93 2.24 16 16 C -0.18 -2.18 10.09 22.19 0.22 -1.96 16 17 C 0.13 2.11 7.32 39.38 0.29 2.40 16 18 N -0.56 -7.80 6.05 -177.04 -1.07 -8.87 16 19 H 0.43 3.61 8.12 -92.71 -0.75 2.86 16 20 C -0.13 -3.86 6.77 31.99 0.22 -3.64 16 21 C 0.10 4.03 4.69 86.86 0.41 4.44 16 22 N -0.61 -26.34 2.94 -668.29 -1.97 -28.31 16 23 C -0.20 -10.49 7.93 84.03 0.67 -9.82 16 24 H 0.08 4.36 6.94 -2.91 -0.02 4.34 16 25 C -0.04 -2.14 5.45 84.86 0.46 -1.68 16 26 N -0.96 -58.48 13.97 21.65 0.30 -58.17 16 27 Si 0.93 46.09 24.25 68.60 1.66 47.75 16 28 H -0.28 -13.00 6.52 99.48 0.65 -12.35 16 29 H -0.32 -16.18 7.11 99.48 0.71 -15.47 16 30 H -0.27 -12.99 6.48 99.48 0.64 -12.35 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 2.34 5.42 -2.39 -0.01 2.33 16 33 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 6.24 7.42 -92.71 -0.69 5.55 16 37 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.05 2.02 6.58 -2.39 -0.02 2.00 16 44 H 0.02 0.92 5.43 -2.39 -0.01 0.91 16 45 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -71.09 359.80 0.32 -70.77 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -0.52 Total: 15.38 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 6.28 Total: 7.00 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -7.03 Total: -123.71 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.07 Total: -17.19 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.66 Total: 47.75 kcal Total: -71.09 0.32 -70.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087624740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.423 kcal (2) G-P(sol) polarization free energy of solvation -71.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds