Wall clock time and date at job start Tue Mar 31 2020 14:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47095 * 2 1 4 4 H 1.08992 * 109.87709 * 54.28820 * 3 2 1 5 5 C 1.54328 * 109.88263 * 293.27290 * 3 2 1 6 6 H 1.09007 * 110.71695 * 336.77780 * 5 3 2 7 7 N 1.46498 * 110.72170 * 99.86810 * 5 3 2 8 8 C 1.34773 * 120.00368 * 204.72795 * 7 5 3 9 9 O 1.21658 * 119.99801 * 355.28668 * 8 7 5 10 10 C 1.47048 * 119.99996 * 175.28926 * 8 7 5 11 11 C 1.37594 * 119.93280 * 5.59151 * 10 8 7 12 12 C 1.39942 * 120.01372 * 179.72884 * 11 10 8 13 13 C 1.36215 * 119.91905 * 0.56493 * 12 11 10 14 14 C 1.40919 * 119.79882 * 359.70901 * 13 12 11 15 15 N 1.32579 * 132.18770 * 180.02562 * 14 13 12 16 16 C 1.33239 * 109.13587 * 179.97438 * 15 14 13 17 17 C 1.35449 * 108.57889 * 0.02562 * 16 15 14 18 18 N 1.36247 * 107.17769 * 359.97438 * 17 16 15 19 19 C 1.55155 * 102.94603 * 218.23849 * 5 3 2 20 20 C 1.54917 * 101.57863 * 35.49785 * 19 5 3 21 21 N 1.47021 * 110.01267 * 175.39141 * 3 2 1 22 22 C 1.36937 * 125.64473 * 298.46338 * 21 3 2 23 23 H 1.08003 * 120.00222 * 345.07567 * 22 21 3 24 24 C 1.38814 * 120.00206 * 165.07217 * 22 21 3 25 25 N 1.31623 * 119.99686 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00437 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46890 * 0.02562 * 26 24 22 28 28 H 1.48491 * 109.47245 * 120.00218 * 26 24 22 29 29 H 1.48499 * 109.47228 * 240.00565 * 26 24 22 30 30 H 1.08994 * 109.47394 * 297.07860 * 1 2 3 31 31 H 1.08999 * 109.47006 * 57.07875 * 1 2 3 32 32 H 1.08998 * 109.46908 * 177.07798 * 1 2 3 33 33 H 1.08997 * 109.47495 * 239.99543 * 2 1 3 34 34 H 1.09006 * 109.47122 * 119.99594 * 2 1 3 35 35 H 0.97005 * 119.99635 * 25.00577 * 7 5 3 36 36 H 1.08004 * 119.99354 * 0.02562 * 11 10 8 37 37 H 1.08000 * 120.04039 * 180.27518 * 12 11 10 38 38 H 1.07997 * 120.10094 * 179.72326 * 13 12 11 39 39 H 1.08000 * 125.70853 * 180.02562 * 16 15 14 40 40 H 1.08008 * 126.40734 * 179.97438 * 17 16 15 41 41 H 1.08993 * 111.00903 * 153.57200 * 19 5 3 42 42 H 1.09005 * 110.99963 * 277.42900 * 19 5 3 43 43 H 1.09007 * 110.36192 * 204.15402 * 20 19 5 44 44 H 1.09000 * 110.36265 * 81.83555 * 20 19 5 45 45 H 0.97001 * 119.99506 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5994 1.9913 0.8323 5 6 1.6743 2.1285 -1.3332 6 1 1.5187 1.3880 -2.1179 7 7 0.4857 2.9699 -1.1742 8 6 -0.2885 3.2512 -2.2410 9 8 0.0453 2.8786 -3.3500 10 6 -1.5366 4.0084 -2.0645 11 6 -1.8557 4.5281 -0.8311 12 6 -3.0403 5.2538 -0.6625 13 6 -3.8822 5.4350 -1.7179 14 6 -3.5526 4.8953 -2.9773 15 7 -4.1753 4.9207 -4.1474 16 6 -3.4470 4.2571 -5.0443 17 6 -2.3295 3.7937 -4.4351 18 7 -2.3869 4.1909 -3.1330 19 6 2.9253 2.9962 -1.6322 20 6 4.0648 2.0943 -1.0955 21 7 3.5059 1.4579 0.1110 22 6 4.2320 0.9623 1.1610 23 1 3.7425 0.7354 2.0966 24 6 5.5970 0.7514 1.0228 25 7 6.1935 1.0283 -0.1174 26 14 6.5876 0.0761 2.4552 27 1 5.6888 -0.1502 3.6156 28 1 7.2172 -1.2092 2.0594 29 1 7.6441 1.0502 2.8295 30 1 -0.3634 0.4678 0.9149 31 1 -0.3633 0.5585 -0.8626 32 1 -0.3633 -1.0263 -0.0524 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.2581 3.3280 -0.3019 36 1 -1.1895 4.3801 0.0060 37 1 -3.2891 5.6658 0.3044 38 1 -4.7993 5.9908 -1.5901 39 1 -3.7046 4.1128 -6.0832 40 1 -1.5406 3.2172 -4.8953 41 1 3.0346 3.1683 -2.7029 42 1 2.8851 3.9400 -1.0884 43 1 4.9359 2.6968 -0.8378 44 1 4.3304 1.3386 -1.8347 45 1 7.1475 0.8813 -0.2138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087656713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:14 Heat of formation + Delta-G solvation = 84.325888 kcal Electronic energy + Delta-G solvation = -28102.928820 eV Core-core repulsion = 24315.617923 eV Total energy + Delta-G solvation = -3787.310897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.02904 -40.05372 -38.00345 -37.28390 -34.38612 -33.74328 -32.91467 -31.95165 -30.57767 -29.31633 -28.75532 -26.73932 -25.18090 -24.26981 -22.90675 -22.60497 -21.99653 -20.86298 -20.39243 -19.73948 -17.96875 -17.54637 -16.95285 -16.86623 -16.31250 -16.05069 -15.65450 -14.89975 -14.70312 -14.43100 -14.15815 -14.10478 -13.86621 -13.72428 -13.36154 -12.83751 -12.69031 -12.60292 -12.22939 -12.06641 -11.95520 -11.75414 -11.31348 -11.23980 -10.98081 -10.92598 -10.74861 -10.58328 -10.46459 -10.39967 -10.12728 -10.02967 -9.84244 -9.75427 -9.11339 -8.89898 -8.67055 -8.08186 -6.90001 -5.83739 -3.20778 0.00628 1.01785 2.13905 2.34452 2.92752 3.02271 3.31860 3.33161 3.39306 3.41530 3.97582 4.19571 4.27930 4.40997 4.44871 4.74323 5.08237 5.15218 5.23339 5.25011 5.33509 5.36840 5.44866 5.47409 5.63259 5.66479 5.67792 5.72119 5.74774 5.93974 6.06759 6.10995 6.13263 6.29447 6.33823 6.41592 6.42965 6.54953 6.57913 6.73921 6.82705 6.99922 7.34767 7.41312 7.53002 7.63576 7.70539 7.96573 8.17671 9.09352 9.70228 10.37187 11.28260 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.002795 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.238644 B =10014.945866 C =10293.101926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.036 0.964 5 C 0.138 3.862 6 H 0.098 0.902 7 N -0.697 5.697 8 C 0.559 3.441 9 O -0.527 6.527 10 C 0.040 3.960 11 C -0.089 4.089 12 C -0.118 4.118 13 C -0.048 4.048 14 C 0.199 3.801 15 N -0.485 5.485 16 C 0.021 3.979 17 C -0.063 4.063 18 N -0.336 5.336 19 C -0.156 4.156 20 C 0.174 3.826 21 N -0.593 5.593 22 C -0.230 4.230 23 H 0.076 0.924 24 C -0.002 4.002 25 N -0.915 5.915 26 Si 0.910 3.090 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.290 1.290 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.183 0.817 40 H 0.194 0.806 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.029 0.971 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.880 7.404 -1.744 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.034 3.966 6 H 0.115 0.885 7 N -0.348 5.348 8 C 0.344 3.656 9 O -0.405 6.405 10 C -0.066 4.066 11 C -0.111 4.111 12 C -0.142 4.142 13 C -0.069 4.069 14 C -0.042 4.042 15 N -0.205 5.205 16 C -0.131 4.131 17 C -0.196 4.196 18 N -0.008 5.008 19 C -0.196 4.196 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.358 4.358 23 H 0.094 0.906 24 C -0.199 4.199 25 N -0.561 5.561 26 Si 0.740 3.260 27 H -0.204 1.204 28 H -0.216 1.216 29 H -0.217 1.217 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.200 0.800 40 H 0.211 0.789 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.047 0.953 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.083 7.398 -2.678 19.721 hybrid contribution 1.278 -0.687 1.189 1.876 sum -16.805 6.711 -1.489 18.157 Atomic orbital electron populations 1.21786 0.97296 1.00727 1.00791 1.22028 0.93515 0.99090 1.02610 1.21060 0.87460 0.93459 0.92673 0.94677 1.22260 0.82657 0.92298 0.99348 0.88452 1.45921 1.27087 1.51413 1.10334 1.17443 0.82547 0.80135 0.85487 1.90820 1.72755 1.52952 1.23929 1.20236 0.93886 1.04960 0.87551 1.21372 0.98212 0.96838 0.94676 1.20959 0.93722 0.99668 0.99840 1.20443 1.00647 0.97986 0.87802 1.21021 0.85689 1.01061 0.96418 1.70645 1.29506 1.22438 0.97929 1.22620 0.91776 0.98781 0.99922 1.23185 1.04588 1.09708 0.82152 1.42557 1.15709 1.34371 1.08136 1.23444 0.96465 0.99071 1.00624 1.21442 0.92946 0.93055 0.87667 1.44442 0.98335 1.68923 1.20066 1.18972 0.90071 1.36504 0.90297 0.90602 1.24927 0.97182 1.00753 0.97061 1.69934 1.09763 1.52789 1.23608 0.86082 0.80079 0.78481 0.81311 1.20408 1.21647 1.21702 0.93374 0.93483 0.93549 0.92345 0.91436 0.76454 0.82716 0.83177 0.82795 0.79951 0.78900 0.91705 0.91889 0.90702 0.95262 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.78 37.16 0.36 -1.68 16 2 C -0.13 -2.31 5.43 -26.73 -0.15 -2.45 16 3 C 0.16 2.96 2.92 -66.95 -0.20 2.76 16 4 H 0.04 0.62 7.72 -51.93 -0.40 0.21 16 5 C 0.14 2.28 2.00 -66.10 -0.13 2.14 16 6 H 0.10 1.76 7.26 -51.93 -0.38 1.38 16 7 N -0.70 -8.98 4.56 -53.22 -0.24 -9.22 16 8 C 0.56 7.79 7.74 -12.69 -0.10 7.69 16 9 O -0.53 -9.00 14.33 5.23 0.07 -8.92 16 10 C 0.04 0.48 6.78 -81.86 -0.56 -0.07 16 11 C -0.09 -0.74 9.52 -39.18 -0.37 -1.12 16 12 C -0.12 -0.83 10.04 -39.67 -0.40 -1.22 16 13 C -0.05 -0.43 10.09 -39.30 -0.40 -0.82 16 14 C 0.20 2.51 7.80 -156.03 -1.22 1.29 16 15 N -0.49 -6.59 11.31 -12.76 -0.14 -6.73 16 16 C 0.02 0.25 11.83 -17.94 -0.21 0.04 16 17 C -0.06 -0.82 10.80 -16.59 -0.18 -1.00 16 18 N -0.34 -4.43 2.97 -58.75 -0.17 -4.60 16 19 C -0.16 -2.85 6.77 -24.58 -0.17 -3.01 16 20 C 0.17 3.99 5.41 -2.53 -0.01 3.98 16 21 N -0.59 -13.84 3.13 -162.57 -0.51 -14.35 16 22 C -0.23 -5.96 9.72 -15.06 -0.15 -6.11 16 23 H 0.08 1.91 7.83 -52.48 -0.41 1.50 16 24 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 25 N -0.91 -25.73 10.59 55.49 0.59 -25.14 16 26 Si 0.91 21.15 29.55 -169.99 -5.02 16.12 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.64 6.91 -51.93 -0.36 0.29 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 34 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 35 H 0.40 4.02 6.36 -40.82 -0.26 3.76 16 36 H 0.16 0.86 6.34 -52.48 -0.33 0.53 16 37 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 38 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.18 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.19 2.50 6.68 -52.48 -0.35 2.15 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.92 6.95 -51.93 -0.36 1.56 16 44 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -32.31 364.90 -10.08 -42.39 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.19 Total: 4.69 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -3.96 Total: 0.27 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.48 Total: -60.05 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.31 -10.08 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087656713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.715 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds