Wall clock time and date at job start Tue Mar 31 2020 14:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46985 * 2 1 4 4 H 1.08998 * 109.87182 * 55.81153 * 3 2 1 5 5 C 1.54319 * 109.88479 * 294.78661 * 3 2 1 6 6 H 1.08999 * 110.72493 * 336.93526 * 5 3 2 7 7 N 1.46510 * 110.71560 * 100.02878 * 5 3 2 8 8 C 1.34776 * 119.99335 * 204.99788 * 7 5 3 9 9 O 1.21758 * 120.00416 * 0.02562 * 8 7 5 10 10 C 1.46305 * 119.99568 * 179.97438 * 8 7 5 11 11 N 1.32511 * 125.56365 * 0.02960 * 10 8 7 12 12 C 1.32025 * 109.86570 * 179.97438 * 11 10 8 13 13 C 1.39357 * 107.93631 * 0.02562 * 12 11 10 14 14 C 1.40413 * 133.42332 * 180.02562 * 13 12 11 15 15 C 1.36321 * 119.19764 * 179.90105 * 14 13 12 16 16 C 1.40334 * 119.58603 * 0.09759 * 15 14 13 17 17 C 1.35163 * 120.39528 * 359.93776 * 16 15 14 18 18 N 1.36188 * 120.59827 * 0.02562 * 17 16 15 19 19 C 1.55152 * 102.94387 * 218.38642 * 5 3 2 20 20 C 1.54910 * 101.58008 * 35.50856 * 19 5 3 21 21 N 1.47031 * 109.88101 * 176.97838 * 3 2 1 22 22 C 1.36937 * 125.64806 * 298.39877 * 21 3 2 23 23 H 1.07996 * 119.99944 * 345.37219 * 22 21 3 24 24 C 1.38813 * 119.99771 * 165.37768 * 22 21 3 25 25 N 1.31618 * 120.00065 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99866 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47121 * 59.99721 * 26 24 22 28 28 H 1.48501 * 109.47068 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46946 * 299.99767 * 26 24 22 30 30 H 1.08998 * 109.47385 * 65.57310 * 1 2 3 31 31 H 1.08997 * 109.47051 * 185.57538 * 1 2 3 32 32 H 1.08998 * 109.47088 * 305.57765 * 1 2 3 33 33 H 1.09001 * 109.46915 * 240.00572 * 2 1 3 34 34 H 1.08999 * 109.47317 * 120.00673 * 2 1 3 35 35 H 0.97001 * 120.00250 * 24.99914 * 7 5 3 36 36 H 1.08001 * 126.02922 * 180.02562 * 12 11 10 37 37 H 1.07998 * 120.40104 * 359.97177 * 14 13 12 38 38 H 1.07994 * 120.20969 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.80222 * 179.97438 * 16 15 14 40 40 H 1.08002 * 119.70200 * 180.02562 * 17 16 15 41 41 H 1.09005 * 111.00124 * 153.57744 * 19 5 3 42 42 H 1.08995 * 111.01271 * 277.42945 * 19 5 3 43 43 H 1.09005 * 110.36644 * 204.14873 * 20 19 5 44 44 H 1.08996 * 110.37125 * 81.82312 * 20 19 5 45 45 H 0.96997 * 120.00252 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6204 1.9838 0.8479 5 6 1.6413 2.1402 -1.3175 6 1 1.4634 1.4067 -2.1039 7 7 0.4592 2.9831 -1.1205 8 6 -0.3448 3.2703 -2.1633 9 8 -0.0892 2.8289 -3.2689 10 6 -1.5256 4.1115 -1.9666 11 7 -1.9069 4.6476 -0.8163 12 6 -3.0121 5.3481 -0.9923 13 6 -3.3670 5.2591 -2.3370 14 6 -4.4258 5.7875 -3.0928 15 6 -4.4942 5.5109 -4.4259 16 6 -3.5101 4.7041 -5.0175 17 6 -2.4985 4.2034 -4.2740 18 7 -2.4182 4.4728 -2.9415 19 6 2.8861 3.0077 -1.6418 20 6 4.0370 2.0989 -1.1427 21 7 3.5084 1.4537 0.0729 22 6 4.2604 0.9479 1.0994 23 1 3.7941 0.7098 2.0440 24 6 5.6220 0.7411 0.9259 25 7 6.1902 1.0308 -0.2254 26 14 6.6477 0.0504 2.3260 27 1 6.1275 -1.2871 2.7076 28 1 8.0614 -0.0751 1.8888 29 1 6.5696 0.9638 3.4942 30 1 -0.3634 0.4250 -0.9356 31 1 -0.3633 -1.0228 0.0998 32 1 -0.3633 0.5979 0.8358 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.2554 3.3344 -0.2396 36 1 -3.5467 5.8937 -0.2289 37 1 -5.1763 6.4066 -2.6239 38 1 -5.3013 5.9092 -5.0228 39 1 -3.5611 4.4824 -6.0733 40 1 -1.7469 3.5841 -4.7409 41 1 2.9678 3.1884 -2.7137 42 1 2.8624 3.9471 -1.0896 43 1 4.9161 2.6973 -0.9029 44 1 4.2814 1.3487 -1.8947 45 1 7.1416 0.8860 -0.3469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087657313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:58 Heat of formation + Delta-G solvation = 75.797223 kcal Electronic energy + Delta-G solvation = -27907.509870 eV Core-core repulsion = 24119.829142 eV Total energy + Delta-G solvation = -3787.680728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.10409 -39.59250 -37.84628 -37.55075 -34.17017 -33.55934 -32.73673 -31.78858 -31.17854 -29.28571 -28.44106 -26.53520 -24.77991 -24.16076 -23.56863 -22.47301 -22.05706 -20.66744 -20.16535 -19.70582 -18.01632 -17.20546 -16.80675 -16.60052 -16.36605 -15.89264 -15.71745 -15.00015 -14.72842 -14.46693 -14.29618 -13.94996 -13.80004 -13.71494 -13.17311 -12.68260 -12.65132 -12.32163 -12.11994 -11.98927 -11.90301 -11.62987 -11.13627 -11.09894 -10.87651 -10.81380 -10.66450 -10.58748 -10.44268 -10.34920 -10.09543 -9.92928 -9.70665 -9.66524 -9.62586 -8.69458 -8.55898 -7.78444 -6.78620 -5.73200 -3.09423 0.44579 0.60205 2.08417 2.18610 3.06111 3.36907 3.41838 3.42041 3.46310 3.47234 4.13865 4.19691 4.42274 4.50194 4.54187 4.57210 4.69398 5.10369 5.28887 5.31273 5.38877 5.48152 5.52488 5.57546 5.63262 5.79580 5.80011 5.82318 5.88864 6.10214 6.15906 6.22751 6.27259 6.30300 6.45226 6.49646 6.57227 6.68604 6.71233 6.75045 6.97333 7.14412 7.37917 7.52757 7.62404 7.75217 7.80665 8.25420 8.30294 9.20227 9.81112 10.49063 11.38828 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027495 B = 0.002659 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.131113 B =10527.509215 C =10738.426236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.038 0.962 5 C 0.138 3.862 6 H 0.097 0.903 7 N -0.685 5.685 8 C 0.607 3.393 9 O -0.551 6.551 10 C 0.092 3.908 11 N -0.403 5.403 12 C -0.013 4.013 13 C 0.017 3.983 14 C -0.082 4.082 15 C -0.112 4.112 16 C -0.138 4.138 17 C 0.067 3.933 18 N -0.321 5.321 19 C -0.157 4.157 20 C 0.175 3.825 21 N -0.593 5.593 22 C -0.227 4.227 23 H 0.075 0.925 24 C -0.003 4.003 25 N -0.917 5.917 26 Si 0.911 3.089 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.409 0.591 36 H 0.188 0.812 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.180 0.820 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.028 0.972 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.491 9.409 -7.681 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.056 0.944 5 C 0.034 3.966 6 H 0.115 0.885 7 N -0.335 5.335 8 C 0.392 3.608 9 O -0.429 6.429 10 C -0.158 4.158 11 N -0.119 5.119 12 C -0.175 4.175 13 C -0.095 4.095 14 C -0.102 4.102 15 C -0.134 4.134 16 C -0.158 4.158 17 C -0.056 4.056 18 N 0.010 4.990 19 C -0.197 4.197 20 C 0.050 3.950 21 N -0.318 5.318 22 C -0.356 4.356 23 H 0.093 0.907 24 C -0.200 4.200 25 N -0.564 5.564 26 Si 0.741 3.259 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.245 0.755 36 H 0.205 0.795 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.197 0.803 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.376 8.767 -7.699 24.353 hybrid contribution -0.050 -0.097 0.316 0.334 sum -21.427 8.671 -7.383 24.265 Atomic orbital electron populations 1.21769 0.97251 1.00455 1.00982 1.22009 0.93536 0.99075 1.02434 1.21085 0.87087 0.93394 0.93179 0.94448 1.22221 0.82912 0.92313 0.99148 0.88508 1.45724 1.25752 1.50718 1.11276 1.16078 0.80312 0.79324 0.85094 1.90818 1.73740 1.54308 1.24080 1.22502 0.98786 1.11366 0.83110 1.69943 1.11702 1.07883 1.22339 1.22715 0.96544 1.05450 0.92751 1.20034 0.93889 1.00394 0.95171 1.20554 0.96231 0.99832 0.93578 1.21177 0.99219 0.98184 0.94808 1.20987 0.94306 0.99393 1.01124 1.22135 1.01217 1.01215 0.81004 1.42419 1.18101 1.30752 1.07690 1.23450 0.96598 0.99213 1.00404 1.21431 0.93059 0.92852 0.87679 1.44428 0.98289 1.68385 1.20699 1.18901 0.89915 1.35886 0.90854 0.90720 1.24903 0.97222 1.00946 0.96971 1.69913 1.10710 1.52879 1.22874 0.86228 0.79362 0.79081 0.81249 1.21099 1.21638 1.21116 0.93532 0.93706 0.93282 0.92372 0.91615 0.75472 0.79454 0.83186 0.84190 0.82984 0.80330 0.91862 0.91840 0.90737 0.95359 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.58 37.16 0.36 -1.96 16 2 C -0.13 -2.50 5.41 -26.73 -0.14 -2.64 16 3 C 0.16 3.27 2.94 -66.95 -0.20 3.07 16 4 H 0.04 0.76 7.71 -51.93 -0.40 0.36 16 5 C 0.14 2.57 2.02 -66.10 -0.13 2.44 16 6 H 0.10 1.91 7.18 -51.93 -0.37 1.54 16 7 N -0.69 -11.16 4.91 -53.44 -0.26 -11.42 16 8 C 0.61 10.06 7.77 -13.02 -0.10 9.96 16 9 O -0.55 -10.12 14.98 5.14 0.08 -10.04 16 10 C 0.09 1.36 7.82 -153.90 -1.20 0.16 16 11 N -0.40 -5.63 10.79 -10.62 -0.11 -5.74 16 12 C -0.01 -0.14 12.00 -17.05 -0.20 -0.34 16 13 C 0.02 0.18 6.80 -84.21 -0.57 -0.39 16 14 C -0.08 -0.59 10.11 -39.45 -0.40 -0.99 16 15 C -0.11 -0.70 10.08 -39.48 -0.40 -1.09 16 16 C -0.14 -1.00 9.98 -39.89 -0.40 -1.40 16 17 C 0.07 0.71 10.52 -16.71 -0.18 0.54 16 18 N -0.32 -4.09 2.95 -58.88 -0.17 -4.27 16 19 C -0.16 -3.12 6.77 -24.58 -0.17 -3.29 16 20 C 0.17 4.25 5.41 -2.53 -0.01 4.23 16 21 N -0.59 -14.79 3.13 -162.57 -0.51 -15.30 16 22 C -0.23 -6.19 9.75 -15.06 -0.15 -6.34 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 25 N -0.92 -26.69 10.57 55.49 0.59 -26.10 16 26 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 30 H 0.05 0.74 7.40 -51.93 -0.38 0.36 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 34 H 0.07 1.33 7.90 -51.93 -0.41 0.92 16 35 H 0.41 6.25 8.01 -40.82 -0.33 5.92 16 36 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 39 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.18 1.97 6.77 -52.49 -0.36 1.61 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.07 2.00 6.93 -51.93 -0.36 1.64 16 44 H 0.03 0.74 8.06 -51.93 -0.42 0.33 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -32.45 369.59 -10.22 -42.67 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.38 Total: 5.94 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -3.99 Total: 1.77 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.47 Total: -62.83 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.45 -10.22 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087657313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.464 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds