Wall clock time and date at job start Tue Mar 31 2020 14:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21602 * 120.00344 * 0.02562 * 8 7 5 10 10 C 1.47473 * 119.99826 * 180.02562 * 8 7 5 11 11 C 1.39001 * 120.29745 * 0.02562 * 10 8 7 12 12 C 1.38504 * 120.36835 * 179.97438 * 11 10 8 13 13 C 1.37825 * 120.79202 * 359.97438 * 12 11 10 14 14 C 1.39217 * 120.19683 * 359.97438 * 13 12 11 15 15 N 1.37218 * 133.65033 * 179.97438 * 14 13 12 16 16 H 0.96998 * 125.98378 * 0.05409 * 15 14 13 17 17 N 1.40036 * 108.03376 * 180.02562 * 15 14 13 18 18 C 1.30264 * 109.70128 * 359.97438 * 17 15 14 19 19 C 1.40681 * 119.78646 * 359.77347 * 14 13 12 20 20 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 21 21 C 1.54910 * 101.58094 * 35.30826 * 20 5 3 22 22 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 23 23 C 1.36929 * 125.64715 * 298.39367 * 22 3 2 24 24 H 1.07995 * 120.00262 * 333.70687 * 23 22 3 25 25 C 1.38817 * 119.99616 * 153.71303 * 23 22 3 26 26 N 1.31623 * 119.99847 * 334.82944 * 25 23 22 27 27 Si 1.86801 * 120.00106 * 154.83543 * 25 23 22 28 28 H 1.48500 * 109.46938 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47159 * 239.99924 * 27 25 23 30 30 H 1.48497 * 109.47066 * 119.99285 * 27 25 23 31 31 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 32 32 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 33 33 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 34 34 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 35 35 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 36 36 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 37 37 H 1.08008 * 119.81305 * 359.96992 * 11 10 8 38 38 H 1.08002 * 119.59963 * 179.97438 * 12 11 10 39 39 H 1.07991 * 119.90329 * 180.02562 * 13 12 11 40 40 H 1.08002 * 125.64491 * 179.97438 * 18 17 15 41 41 H 1.09000 * 111.00497 * 277.23103 * 20 5 3 42 42 H 1.08995 * 111.00085 * 153.37724 * 20 5 3 43 43 H 1.08998 * 110.36323 * 204.15638 * 21 20 5 44 44 H 1.08998 * 110.37052 * 81.82802 * 21 20 5 45 45 H 0.96994 * 120.00061 * 353.73735 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0263 0.8676 -1.0625 10 6 5.7082 1.6762 -3.2285 11 6 4.8445 2.2832 -4.1329 12 6 5.2584 2.5453 -5.4284 13 6 6.5292 2.2113 -5.8443 14 6 7.4177 1.6033 -4.9617 15 7 8.7125 1.1633 -5.0743 16 1 9.2648 1.2148 -5.8701 17 7 9.0973 0.6274 -3.8391 18 6 8.1108 0.7207 -2.9935 19 6 7.0163 1.3345 -3.6405 20 6 3.9754 2.6210 0.8567 21 6 2.9035 2.4946 1.9679 22 7 1.6707 2.1033 1.2604 23 6 0.3933 2.3150 1.7059 24 1 -0.4192 2.3937 0.9989 25 6 0.1428 2.4287 3.0666 26 7 0.9579 1.8681 3.9349 27 14 -1.3511 3.3769 3.6653 28 1 -2.1014 3.9067 2.4984 29 1 -0.9097 4.5057 4.5233 30 1 -2.2296 2.4726 4.4499 31 1 -0.3633 0.3815 0.9543 32 1 -0.3633 0.6357 -0.8074 33 1 -0.3634 -1.0171 -0.1468 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.4132 2.1561 -2.0887 37 1 3.8452 2.5519 -3.8236 38 1 4.5770 3.0170 -6.1210 39 1 6.8370 2.4226 -6.8577 40 1 8.1281 0.3862 -1.9667 41 1 3.8993 3.5820 0.3479 42 1 4.9767 2.4730 1.2611 43 1 2.7645 3.4512 2.4714 44 1 3.1896 1.7254 2.6852 45 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087680883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:01 Heat of formation + Delta-G solvation = 74.147634 kcal Electronic energy + Delta-G solvation = -27844.902494 eV Core-core repulsion = 24057.150235 eV Total energy + Delta-G solvation = -3787.752259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78345 -39.78805 -37.98673 -37.09691 -34.29669 -32.86874 -32.57400 -31.94298 -30.28100 -29.87778 -28.50153 -26.89751 -24.78216 -23.91141 -22.77474 -22.04314 -21.70699 -20.96012 -20.27808 -19.64322 -18.24859 -17.42149 -17.17890 -16.56040 -16.04269 -15.33732 -15.30269 -14.90734 -14.64639 -14.52662 -14.18756 -13.82684 -13.64618 -13.54718 -13.12039 -12.89626 -12.43943 -12.27777 -12.22673 -12.05795 -12.01228 -11.62398 -11.18779 -11.08743 -10.92253 -10.74499 -10.59143 -10.47690 -10.25307 -10.11504 -10.08080 -9.86942 -9.77787 -9.43591 -9.01117 -8.79996 -8.39575 -8.35917 -6.91073 -6.05445 -3.22553 0.21619 1.06018 2.27852 2.41602 2.77007 3.15980 3.50067 3.53046 3.65462 3.65962 4.28058 4.44044 4.50694 4.57048 4.66046 4.73694 4.91638 5.09732 5.30534 5.32923 5.35829 5.40609 5.43412 5.54952 5.70193 5.86735 5.92707 5.96794 5.98951 6.05047 6.14590 6.17098 6.29708 6.36620 6.40196 6.50350 6.57333 6.66093 6.77738 6.94806 6.94888 7.04980 7.10354 7.29255 7.33002 7.59493 7.87308 8.26015 8.49409 9.01675 9.78931 10.37531 11.22356 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.002720 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.300492 B =10292.958668 C =10642.684518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.036 0.964 5 C 0.135 3.865 6 H 0.095 0.905 7 N -0.707 5.707 8 C 0.555 3.445 9 O -0.533 6.533 10 C -0.049 4.049 11 C -0.121 4.121 12 C -0.075 4.075 13 C -0.121 4.121 14 C 0.119 3.881 15 N -0.510 5.510 16 H 0.441 0.559 17 N -0.254 5.254 18 C 0.093 3.907 19 C -0.131 4.131 20 C -0.144 4.144 21 C 0.143 3.857 22 N -0.590 5.590 23 C -0.325 4.325 24 H 0.064 0.936 25 C -0.024 4.024 26 N -0.914 5.914 27 Si 1.068 2.932 28 H -0.292 1.292 29 H -0.291 1.291 30 H -0.294 1.294 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.398 0.602 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.205 0.795 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.815 0.934 -20.455 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.054 0.946 5 C 0.031 3.969 6 H 0.113 0.887 7 N -0.357 5.357 8 C 0.341 3.659 9 O -0.411 6.411 10 C -0.055 4.055 11 C -0.141 4.141 12 C -0.096 4.096 13 C -0.144 4.144 14 C 0.001 3.999 15 N -0.225 5.225 16 H 0.286 0.714 17 N -0.068 5.068 18 C -0.102 4.102 19 C -0.140 4.140 20 C -0.183 4.183 21 C 0.018 3.982 22 N -0.316 5.316 23 C -0.453 4.453 24 H 0.081 0.919 25 C -0.227 4.227 26 N -0.553 5.553 27 Si 0.898 3.102 28 H -0.218 1.218 29 H -0.217 1.217 30 H -0.222 1.222 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.234 0.766 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.221 0.779 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.703 0.722 -18.643 21.509 hybrid contribution -0.063 -0.122 -2.090 2.095 sum 10.640 0.600 -20.734 23.312 Atomic orbital electron populations 1.21891 0.95644 0.98856 1.04204 1.21885 0.97080 0.97571 0.99712 1.21194 0.89566 0.92347 0.91958 0.94601 1.22137 0.95636 0.99240 0.79913 0.88749 1.45981 1.13830 1.61687 1.14248 1.18078 0.82163 0.78858 0.86769 1.90741 1.53375 1.42798 1.54209 1.19552 0.92607 0.99505 0.93882 1.21207 0.99628 0.99780 0.93503 1.20916 0.95000 0.97894 0.95770 1.20216 0.93159 1.02103 0.98888 1.18832 0.86961 0.98618 0.95450 1.46117 1.10073 1.54242 1.12083 0.71416 1.76829 1.23377 1.16180 0.90434 1.24271 0.88734 0.96822 1.00418 1.18692 0.95233 1.06625 0.93429 1.23191 0.99461 0.97706 0.97963 1.21552 0.85279 0.98636 0.92779 1.44524 1.01925 1.65356 1.19771 1.19638 0.83762 1.49276 0.92647 0.91875 1.25826 1.03948 1.00551 0.92359 1.70697 1.19045 1.29153 1.36449 0.83482 0.75091 0.76399 0.75185 1.21808 1.21731 1.22163 0.88959 0.94308 0.95222 0.94269 0.92537 0.76612 0.84838 0.84423 0.85219 0.77860 0.91601 0.91449 0.93122 0.95218 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.98 37.16 0.33 -2.51 16 2 C -0.12 -2.31 5.47 -26.73 -0.15 -2.46 16 3 C 0.16 3.01 3.00 -66.94 -0.20 2.81 16 4 H 0.04 0.67 7.69 -51.93 -0.40 0.28 16 5 C 0.14 2.33 2.76 -66.09 -0.18 2.14 16 6 H 0.09 1.77 7.40 -51.92 -0.38 1.38 16 7 N -0.71 -9.82 5.16 -53.08 -0.27 -10.10 16 8 C 0.55 8.07 7.76 -12.50 -0.10 7.97 16 9 O -0.53 -9.29 14.67 5.28 0.08 -9.21 16 10 C -0.05 -0.60 5.90 -104.68 -0.62 -1.22 16 11 C -0.12 -1.09 9.52 -39.20 -0.37 -1.47 16 12 C -0.07 -0.54 9.99 -39.63 -0.40 -0.94 16 13 C -0.12 -0.92 10.06 -39.37 -0.40 -1.32 16 14 C 0.12 1.21 7.32 -84.17 -0.62 0.60 16 15 N -0.51 -4.90 7.45 32.35 0.24 -4.66 16 16 H 0.44 2.66 8.96 -182.65 -1.64 1.03 16 17 N -0.25 -3.12 12.58 30.81 0.39 -2.73 16 18 C 0.09 1.20 11.23 -17.10 -0.19 1.01 16 19 C -0.13 -1.64 6.00 -106.68 -0.64 -2.28 16 20 C -0.14 -2.62 6.77 -24.58 -0.17 -2.79 16 21 C 0.14 3.22 5.56 -2.53 -0.01 3.20 16 22 N -0.59 -13.79 2.92 -162.56 -0.47 -14.27 16 23 C -0.33 -8.43 7.22 -15.06 -0.11 -8.54 16 24 H 0.06 1.65 7.24 -52.49 -0.38 1.27 16 25 C -0.02 -0.65 5.18 -17.43 -0.09 -0.74 16 26 N -0.91 -26.64 13.05 55.49 0.72 -25.91 16 27 Si 1.07 24.61 29.99 -169.99 -5.10 19.52 16 28 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 31 H 0.09 2.09 5.52 -51.93 -0.29 1.80 16 32 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.40 4.52 6.35 -40.82 -0.26 4.26 16 37 H 0.13 0.95 6.38 -52.48 -0.33 0.61 16 38 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.20 2.60 6.95 -52.49 -0.36 2.24 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.03 0.73 6.73 -51.93 -0.35 0.38 16 45 H 0.27 7.96 6.20 -40.82 -0.25 7.70 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -32.08 362.37 -10.11 -42.19 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.25 Total: 6.24 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -3.90 Total: -6.52 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.60 Total: -57.67 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.10 Total: 19.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.08 -10.11 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087680883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.335 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds