Wall clock time and date at job start Tue Mar 31 2020 14:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21602 * 120.00344 * 0.02562 * 8 7 5 10 10 C 1.47473 * 119.99826 * 180.02562 * 8 7 5 11 11 C 1.39001 * 120.29745 * 0.02562 * 10 8 7 12 12 C 1.38504 * 120.36835 * 179.97438 * 11 10 8 13 13 C 1.37825 * 120.79202 * 359.97438 * 12 11 10 14 14 C 1.39217 * 120.19683 * 359.97438 * 13 12 11 15 15 N 1.37218 * 133.65033 * 179.97438 * 14 13 12 16 16 H 0.96998 * 125.98378 * 0.05409 * 15 14 13 17 17 N 1.40036 * 108.03376 * 180.02562 * 15 14 13 18 18 C 1.30264 * 109.70128 * 359.97438 * 17 15 14 19 19 C 1.40681 * 119.78646 * 359.77347 * 14 13 12 20 20 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 21 21 C 1.54910 * 101.58094 * 35.30826 * 20 5 3 22 22 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 23 23 C 1.36929 * 125.64715 * 298.39367 * 22 3 2 24 24 H 1.07995 * 120.00262 * 333.70687 * 23 22 3 25 25 C 1.38817 * 119.99616 * 153.71303 * 23 22 3 26 26 N 1.31623 * 119.99847 * 334.82944 * 25 23 22 27 27 Si 1.86801 * 120.00106 * 154.83543 * 25 23 22 28 28 H 1.48500 * 109.46938 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47159 * 239.99924 * 27 25 23 30 30 H 1.48497 * 109.47066 * 119.99285 * 27 25 23 31 31 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 32 32 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 33 33 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 34 34 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 35 35 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 36 36 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 37 37 H 1.08008 * 119.81305 * 359.96992 * 11 10 8 38 38 H 1.08002 * 119.59963 * 179.97438 * 12 11 10 39 39 H 1.07991 * 119.90329 * 180.02562 * 13 12 11 40 40 H 1.08002 * 125.64491 * 179.97438 * 18 17 15 41 41 H 1.09000 * 111.00497 * 277.23103 * 20 5 3 42 42 H 1.08995 * 111.00085 * 153.37724 * 20 5 3 43 43 H 1.08998 * 110.36323 * 204.15638 * 21 20 5 44 44 H 1.08998 * 110.37052 * 81.82802 * 21 20 5 45 45 H 0.96994 * 120.00061 * 353.73735 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0263 0.8676 -1.0625 10 6 5.7082 1.6762 -3.2285 11 6 4.8445 2.2832 -4.1329 12 6 5.2584 2.5453 -5.4284 13 6 6.5292 2.2113 -5.8443 14 6 7.4177 1.6033 -4.9617 15 7 8.7125 1.1633 -5.0743 16 1 9.2648 1.2148 -5.8701 17 7 9.0973 0.6274 -3.8391 18 6 8.1108 0.7207 -2.9935 19 6 7.0163 1.3345 -3.6405 20 6 3.9754 2.6210 0.8567 21 6 2.9035 2.4946 1.9679 22 7 1.6707 2.1033 1.2604 23 6 0.3933 2.3150 1.7059 24 1 -0.4192 2.3937 0.9989 25 6 0.1428 2.4287 3.0666 26 7 0.9579 1.8681 3.9349 27 14 -1.3511 3.3769 3.6653 28 1 -2.1014 3.9067 2.4984 29 1 -0.9097 4.5057 4.5233 30 1 -2.2296 2.4726 4.4499 31 1 -0.3633 0.3815 0.9543 32 1 -0.3633 0.6357 -0.8074 33 1 -0.3634 -1.0171 -0.1468 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.4132 2.1561 -2.0887 37 1 3.8452 2.5519 -3.8236 38 1 4.5770 3.0170 -6.1210 39 1 6.8370 2.4226 -6.8577 40 1 8.1281 0.3862 -1.9667 41 1 3.8993 3.5820 0.3479 42 1 4.9767 2.4730 1.2611 43 1 2.7645 3.4512 2.4714 44 1 3.1896 1.7254 2.6852 45 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087680883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:00 Heat of formation + Delta-G solvation = 53.018326 kcal Electronic energy + Delta-G solvation = -27845.818730 eV Core-core repulsion = 24057.150235 eV Total energy + Delta-G solvation = -3788.668495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.57929 -41.03214 -39.46048 -37.90164 -35.78781 -34.29103 -33.83443 -33.39997 -31.15549 -30.81731 -30.08423 -28.42625 -26.39904 -25.05467 -23.53714 -23.51725 -22.79648 -22.16419 -21.67106 -21.19978 -19.38504 -19.15018 -18.09227 -17.48147 -17.32180 -16.33348 -16.21115 -16.02388 -15.87196 -15.61157 -15.54991 -15.49441 -15.11748 -14.74692 -14.54799 -14.44851 -14.01516 -13.70960 -13.34070 -12.93929 -12.83584 -12.79744 -12.72915 -12.64064 -12.50394 -12.14648 -12.03670 -11.84372 -11.80287 -11.71353 -11.54545 -11.38857 -11.35904 -10.96977 -10.41843 -10.11842 -9.73275 -9.10339 -8.89690 -8.14822 -5.29654 -0.56589 0.36699 1.38358 1.62260 1.69673 1.72831 1.84294 1.85041 2.01037 2.70185 2.83307 3.29411 3.40820 3.57296 3.64362 3.74886 3.79512 3.82745 3.97904 4.02089 4.13665 4.29610 4.31021 4.41389 4.48263 4.56527 4.59844 4.68591 4.76533 4.86054 4.90640 4.96558 5.02531 5.08604 5.17155 5.21965 5.25014 5.31236 5.35265 5.38511 5.57324 5.67885 5.72590 5.87911 6.29275 6.42104 6.49942 6.53549 6.98846 7.17575 7.77748 8.39440 9.11395 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.002720 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.300492 B =10292.958668 C =10642.684518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.156 3.844 4 H 0.057 0.943 5 C 0.152 3.848 6 H 0.076 0.924 7 N -0.695 5.695 8 C 0.555 3.445 9 O -0.572 6.572 10 C -0.080 4.080 11 C -0.105 4.105 12 C -0.070 4.070 13 C -0.105 4.105 14 C 0.110 3.890 15 N -0.497 5.497 16 H 0.456 0.544 17 N -0.272 5.272 18 C 0.070 3.930 19 C -0.158 4.158 20 C -0.128 4.128 21 C 0.148 3.852 22 N -0.606 5.606 23 C -0.309 4.309 24 H 0.066 0.934 25 C -0.082 4.082 26 N -0.951 5.951 27 Si 1.114 2.886 28 H -0.267 1.267 29 H -0.295 1.295 30 H -0.296 1.296 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.414 0.586 37 H 0.156 0.844 38 H 0.180 0.820 39 H 0.168 0.832 40 H 0.191 0.809 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.025 0.975 44 H 0.001 0.999 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.836 2.316 -25.100 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.050 3.950 4 H 0.075 0.925 5 C 0.046 3.954 6 H 0.094 0.906 7 N -0.347 5.347 8 C 0.344 3.656 9 O -0.452 6.452 10 C -0.086 4.086 11 C -0.125 4.125 12 C -0.091 4.091 13 C -0.126 4.126 14 C -0.008 4.008 15 N -0.215 5.215 16 H 0.304 0.696 17 N -0.087 5.087 18 C -0.124 4.124 19 C -0.167 4.167 20 C -0.167 4.167 21 C 0.022 3.978 22 N -0.332 5.332 23 C -0.438 4.438 24 H 0.084 0.916 25 C -0.278 4.278 26 N -0.594 5.594 27 Si 0.940 3.060 28 H -0.192 1.192 29 H -0.222 1.222 30 H -0.224 1.224 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.253 0.747 37 H 0.174 0.826 38 H 0.197 0.803 39 H 0.186 0.814 40 H 0.207 0.793 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.019 0.981 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.721 2.114 -23.365 25.395 hybrid contribution 0.281 -0.565 -0.842 1.052 sum 10.001 1.549 -24.207 26.237 Atomic orbital electron populations 1.21769 0.95523 1.00227 1.02428 1.21830 0.97079 0.97201 0.99776 1.21324 0.90873 0.92439 0.90384 0.92520 1.21681 0.94161 0.97883 0.81642 0.90564 1.45701 1.14180 1.61928 1.12910 1.18539 0.81573 0.77756 0.87731 1.90728 1.54372 1.44484 1.55605 1.19356 0.93415 1.02891 0.92938 1.21584 0.99820 0.97353 0.93730 1.21417 0.95367 0.96866 0.95403 1.20752 0.92515 0.99458 0.99924 1.19145 0.87286 0.99197 0.95141 1.46097 1.10326 1.53328 1.11739 0.69616 1.76726 1.23659 1.16834 0.91522 1.24155 0.89787 0.98140 1.00324 1.18893 0.95486 1.07629 0.94709 1.23033 0.97964 0.98984 0.96762 1.21375 0.86560 0.96275 0.93579 1.44742 1.01485 1.66188 1.20811 1.19836 0.84787 1.46702 0.92499 0.91600 1.27046 1.05928 1.01591 0.93259 1.70818 1.20237 1.31376 1.36949 0.82865 0.72628 0.75061 0.75461 1.19189 1.22164 1.22386 0.92934 0.92720 0.93256 0.91202 0.95392 0.74728 0.82649 0.80280 0.81445 0.79252 0.90109 0.91216 0.95676 0.98111 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 8.98 71.98 0.65 -4.58 16 2 C -0.12 -4.39 5.47 30.59 0.17 -4.22 16 3 C 0.16 5.82 3.00 45.34 0.14 5.96 16 4 H 0.06 1.93 7.69 -2.39 -0.02 1.92 16 5 C 0.15 5.17 2.76 46.18 0.13 5.29 16 6 H 0.08 2.92 7.40 -2.38 -0.02 2.90 16 7 N -0.70 -18.06 5.16 -440.11 -2.27 -20.33 16 8 C 0.56 15.80 7.76 86.68 0.67 16.48 16 9 O -0.57 -20.57 14.67 -4.04 -0.06 -20.63 16 10 C -0.08 -1.80 5.90 -19.90 -0.12 -1.92 16 11 C -0.10 -1.46 9.52 22.52 0.21 -1.25 16 12 C -0.07 -0.61 9.99 22.24 0.22 -0.39 16 13 C -0.10 -1.07 10.06 22.41 0.23 -0.84 16 14 C 0.11 1.97 7.32 39.13 0.29 2.26 16 15 N -0.50 -8.75 7.45 -51.56 -0.38 -9.14 16 16 H 0.46 4.50 8.96 -213.36 -1.91 2.59 16 17 N -0.27 -6.73 12.58 -56.44 -0.71 -7.44 16 18 C 0.07 1.89 11.23 85.65 0.96 2.86 16 19 C -0.16 -3.85 6.00 -21.20 -0.13 -3.98 16 20 C -0.13 -4.70 6.77 31.99 0.22 -4.49 16 21 C 0.15 6.93 5.56 86.85 0.48 7.42 16 22 N -0.61 -28.71 2.92 -668.22 -1.95 -30.66 16 23 C -0.31 -16.16 7.22 84.04 0.61 -15.55 16 24 H 0.07 3.38 7.24 -2.91 -0.02 3.36 16 25 C -0.08 -4.56 5.18 84.86 0.44 -4.12 16 26 N -0.95 -57.95 13.05 21.65 0.28 -57.66 16 27 Si 1.11 50.27 29.99 68.60 2.06 52.33 16 28 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 29 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 30 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 31 H 0.05 2.36 5.52 -2.39 -0.01 2.35 16 32 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.41 7.99 6.35 -92.71 -0.59 7.40 16 37 H 0.16 1.40 6.38 -2.91 -0.02 1.38 16 38 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 39 H 0.17 0.47 8.06 -2.92 -0.02 0.45 16 40 H 0.19 5.39 6.95 -2.91 -0.02 5.37 16 41 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.00 0.06 6.73 -2.39 -0.02 0.04 16 45 H 0.25 15.88 6.20 -92.71 -0.57 15.31 16 Total: -1.00 -74.59 362.37 0.86 -73.73 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -1.26 Total: 20.87 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.16 Total: -1.08 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -5.03 Total: -125.23 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.06 Total: -20.63 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.06 Total: 52.33 kcal Total: -74.59 0.86 -73.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087680883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.749 kcal (2) G-P(sol) polarization free energy of solvation -74.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds