Wall clock time and date at job start Tue Mar 31 2020 14:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21644 * 120.00239 * 0.02562 * 8 7 5 10 10 C 1.47171 * 119.99737 * 180.02562 * 8 7 5 11 11 C 1.38583 * 120.72718 * 359.73037 * 10 8 7 12 12 C 1.38928 * 121.36211 * 179.75030 * 11 10 8 13 13 C 1.35826 * 122.59666 * 0.52087 * 12 11 10 14 14 C 1.40835 * 120.55683 * 359.75022 * 13 12 11 15 15 C 1.38424 * 134.89797 * 180.02562 * 14 13 12 16 16 N 1.33892 * 107.84678 * 180.02562 * 15 14 13 17 17 H 0.96992 * 125.01809 * 179.97438 * 16 15 14 18 18 N 1.39978 * 109.95903 * 359.97438 * 16 15 14 19 19 C 1.31480 * 109.01808 * 0.02562 * 18 16 15 20 20 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 21 21 C 1.54910 * 101.58094 * 35.30826 * 20 5 3 22 22 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 23 23 C 1.36929 * 125.64715 * 298.39367 * 22 3 2 24 24 H 1.07995 * 120.00262 * 333.70687 * 23 22 3 25 25 C 1.38817 * 119.99616 * 153.71303 * 23 22 3 26 26 N 1.31623 * 119.99847 * 334.82944 * 25 23 22 27 27 Si 1.86801 * 120.00106 * 154.83543 * 25 23 22 28 28 H 1.48500 * 109.46938 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47159 * 239.99924 * 27 25 23 30 30 H 1.48497 * 109.47066 * 119.99285 * 27 25 23 31 31 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 32 32 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 33 33 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 34 34 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 35 35 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 36 36 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 37 37 H 1.07997 * 119.31730 * 359.97438 * 11 10 8 38 38 H 1.08002 * 118.69801 * 180.27275 * 12 11 10 39 39 H 1.08000 * 119.71864 * 179.73249 * 13 12 11 40 40 H 1.07997 * 126.07554 * 0.02562 * 15 14 13 41 41 H 1.09000 * 111.00497 * 277.23103 * 20 5 3 42 42 H 1.08995 * 111.00085 * 153.37724 * 20 5 3 43 43 H 1.08998 * 110.36323 * 204.15638 * 21 20 5 44 44 H 1.08998 * 110.37052 * 81.82802 * 21 20 5 45 45 H 0.96994 * 120.00061 * 353.73735 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0266 0.8675 -1.0622 10 6 5.7073 1.6757 -3.2257 11 6 4.8516 2.2749 -4.1364 12 6 5.2559 2.5473 -5.4373 13 6 6.4958 2.2387 -5.8980 14 6 7.4402 1.6223 -5.0544 15 6 8.7468 1.1897 -5.2020 16 7 9.1417 0.6705 -4.0328 17 1 10.0180 0.2927 -3.8591 18 7 8.1030 0.7533 -3.0980 19 6 7.0599 1.3178 -3.6655 20 6 3.9754 2.6210 0.8567 21 6 2.9035 2.4946 1.9679 22 7 1.6707 2.1033 1.2604 23 6 0.3933 2.3150 1.7059 24 1 -0.4192 2.3937 0.9989 25 6 0.1428 2.4287 3.0666 26 7 0.9579 1.8681 3.9349 27 14 -1.3511 3.3769 3.6653 28 1 -2.1014 3.9067 2.4984 29 1 -0.9097 4.5057 4.5233 30 1 -2.2296 2.4726 4.4499 31 1 -0.3633 0.3815 0.9543 32 1 -0.3633 0.6357 -0.8074 33 1 -0.3634 -1.0171 -0.1468 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.4132 2.1561 -2.0887 37 1 3.8510 2.5388 -3.8273 38 1 4.5552 3.0195 -6.1100 39 1 6.7595 2.4676 -6.9200 40 1 9.3419 1.2588 -6.1006 41 1 3.8993 3.5820 0.3479 42 1 4.9767 2.4730 1.2611 43 1 2.7645 3.4512 2.4714 44 1 3.1896 1.7254 2.6852 45 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087681253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:09 Heat of formation + Delta-G solvation = 56.814370 kcal Electronic energy + Delta-G solvation = -27752.416844 eV Core-core repulsion = 23963.912958 eV Total energy + Delta-G solvation = -3788.503886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20367 -41.01340 -39.43254 -37.76201 -35.75669 -34.30671 -33.76868 -32.95380 -31.78130 -30.51237 -29.78484 -28.40046 -26.38553 -25.57580 -23.75972 -23.16094 -22.77003 -21.73534 -21.65145 -20.70342 -19.31225 -19.06410 -18.40081 -17.80249 -17.38989 -16.39304 -16.18905 -16.09482 -15.83815 -15.53634 -15.46501 -15.16551 -14.98843 -14.83934 -14.60099 -14.09259 -14.02286 -13.72417 -13.35646 -13.03272 -12.83809 -12.77058 -12.64222 -12.61928 -12.52320 -12.17670 -11.85640 -11.83210 -11.74116 -11.58255 -11.52395 -11.38243 -11.27245 -10.81110 -10.43375 -10.11835 -9.84448 -8.92577 -8.63602 -8.17168 -5.31889 -0.61620 0.86811 1.17978 1.61026 1.69084 1.82544 1.83973 2.05073 2.09062 2.69261 2.92630 3.27332 3.29677 3.43099 3.61453 3.73276 3.76712 3.92683 4.08983 4.17345 4.25078 4.25804 4.37932 4.42627 4.46023 4.52437 4.56125 4.65914 4.71476 4.86556 4.91866 4.97033 5.00118 5.04660 5.14973 5.21592 5.30932 5.33443 5.42933 5.56639 5.57484 5.65248 5.85434 5.91906 6.28273 6.39159 6.55671 6.65969 6.95702 7.27628 7.75629 8.37511 9.09009 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024432 B = 0.002693 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.753761 B =10395.246494 C =10743.580108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.158 3.842 4 H 0.058 0.942 5 C 0.153 3.847 6 H 0.068 0.932 7 N -0.701 5.701 8 C 0.555 3.445 9 O -0.580 6.580 10 C -0.176 4.176 11 C -0.001 4.001 12 C -0.193 4.193 13 C 0.017 3.983 14 C -0.252 4.252 15 C 0.135 3.865 16 N -0.425 5.425 17 H 0.458 0.542 18 N -0.349 5.349 19 C 0.110 3.890 20 C -0.128 4.128 21 C 0.150 3.850 22 N -0.606 5.606 23 C -0.310 4.310 24 H 0.068 0.932 25 C -0.083 4.083 26 N -0.951 5.951 27 Si 1.117 2.883 28 H -0.266 1.266 29 H -0.294 1.294 30 H -0.295 1.295 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.412 0.588 37 H 0.151 0.849 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.253 0.747 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.000 1.000 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.398 1.795 -28.734 31.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.051 3.949 4 H 0.076 0.924 5 C 0.047 3.953 6 H 0.086 0.914 7 N -0.354 5.354 8 C 0.345 3.655 9 O -0.461 6.461 10 C -0.183 4.183 11 C -0.023 4.023 12 C -0.212 4.212 13 C -0.003 4.003 14 C -0.262 4.262 15 C -0.024 4.024 16 N -0.125 5.125 17 H 0.305 0.695 18 N -0.176 5.176 19 C -0.048 4.048 20 C -0.168 4.168 21 C 0.024 3.976 22 N -0.331 5.331 23 C -0.439 4.439 24 H 0.085 0.915 25 C -0.279 4.279 26 N -0.594 5.594 27 Si 0.942 3.058 28 H -0.191 1.191 29 H -0.221 1.221 30 H -0.223 1.223 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.250 0.750 37 H 0.169 0.831 38 H 0.181 0.819 39 H 0.191 0.809 40 H 0.269 0.731 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.018 0.982 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.516 1.450 -25.674 29.050 hybrid contribution 0.850 -0.734 -0.993 1.499 sum 14.366 0.716 -26.667 30.299 Atomic orbital electron populations 1.21761 0.95187 1.00319 1.02526 1.21825 0.97324 0.97141 0.99599 1.21305 0.90591 0.92497 0.90469 0.92441 1.21623 0.94299 0.97488 0.81864 0.91413 1.45669 1.14200 1.62749 1.12776 1.18508 0.81371 0.77607 0.87994 1.90790 1.54577 1.44833 1.55869 1.19763 0.92709 1.12420 0.93411 1.21645 0.98139 0.89394 0.93134 1.20746 0.98396 1.06515 0.95515 1.20874 0.90657 0.89341 0.99380 1.20139 0.96989 1.14706 0.94391 1.23799 0.94393 0.92202 0.92054 1.46631 1.14641 1.43230 1.08040 0.69464 1.77797 0.97702 1.28558 1.13543 1.21880 0.92762 0.96153 0.93956 1.23026 0.97785 0.99038 0.96946 1.21347 0.86519 0.96303 0.93401 1.44747 1.01516 1.66148 1.20739 1.19862 0.84681 1.46785 0.92581 0.91450 1.27134 1.06031 1.01541 0.93214 1.70817 1.20216 1.31374 1.36954 0.82836 0.72462 0.75009 0.75480 1.19090 1.22104 1.22264 0.92804 0.92612 0.93141 0.91473 0.95538 0.74977 0.83143 0.81868 0.80940 0.73116 0.90103 0.91855 0.95448 0.98234 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.98 71.98 0.65 -4.81 16 2 C -0.12 -4.75 5.47 30.59 0.17 -4.59 16 3 C 0.16 6.42 3.00 45.34 0.14 6.56 16 4 H 0.06 2.15 7.69 -2.39 -0.02 2.13 16 5 C 0.15 5.96 2.76 46.18 0.13 6.08 16 6 H 0.07 2.99 7.40 -2.38 -0.02 2.97 16 7 N -0.70 -22.15 5.16 -440.38 -2.27 -24.42 16 8 C 0.55 19.83 7.76 86.59 0.67 20.50 16 9 O -0.58 -26.47 16.05 -4.17 -0.07 -26.54 16 10 C -0.18 -5.02 6.05 -18.65 -0.11 -5.13 16 11 C 0.00 -0.02 9.50 22.52 0.21 0.20 16 12 C -0.19 -2.31 9.83 21.88 0.21 -2.09 16 13 C 0.02 0.18 10.02 22.35 0.22 0.41 16 14 C -0.25 -4.20 6.34 -20.25 -0.13 -4.33 16 15 C 0.13 1.22 12.08 84.42 1.02 2.24 16 16 N -0.43 -6.67 7.18 -56.29 -0.40 -7.07 16 17 H 0.46 3.62 8.96 -213.41 -1.91 1.71 16 18 N -0.35 -10.68 12.24 -45.22 -0.55 -11.23 16 19 C 0.11 3.14 7.28 43.75 0.32 3.45 16 20 C -0.13 -5.29 6.77 31.99 0.22 -5.07 16 21 C 0.15 7.51 5.56 86.85 0.48 7.99 16 22 N -0.61 -30.29 2.92 -668.22 -1.95 -32.24 16 23 C -0.31 -16.79 7.22 84.04 0.61 -16.19 16 24 H 0.07 3.56 7.24 -2.91 -0.02 3.54 16 25 C -0.08 -4.75 5.18 84.86 0.44 -4.31 16 26 N -0.95 -59.55 13.05 21.65 0.28 -59.27 16 27 Si 1.12 51.48 29.99 68.60 2.06 53.54 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 30 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 31 H 0.05 2.51 5.52 -2.39 -0.01 2.50 16 32 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.41 9.95 6.36 -92.71 -0.59 9.36 16 37 H 0.15 2.00 6.38 -2.91 -0.02 1.99 16 38 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.17 0.20 8.06 -2.91 -0.02 0.17 16 40 H 0.25 -1.13 8.06 -2.91 -0.02 -1.16 16 41 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.00 -0.01 6.73 -2.39 -0.02 -0.02 16 45 H 0.25 16.34 6.20 -92.71 -0.57 15.76 16 Total: -1.00 -89.53 365.34 1.07 -88.46 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -1.27 Total: 17.88 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 5.24 Total: 0.91 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -4.90 Total: -134.24 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.07 Total: -26.54 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.06 Total: 53.54 kcal Total: -89.53 1.07 -88.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087681253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.272 kcal (2) G-P(sol) polarization free energy of solvation -89.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds