Wall clock time and date at job start Tue Mar 31 2020 14:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09000 * 110.66494 * 337.04632 * 5 3 2 7 7 N 1.46499 * 110.85229 * 100.19447 * 5 3 2 8 8 C 1.34775 * 120.00280 * 200.14659 * 7 5 3 9 9 O 1.21789 * 119.99573 * 0.02562 * 8 7 5 10 10 C 1.41690 * 120.00461 * 180.02562 * 8 7 5 11 11 C 1.39178 * 125.87939 * 180.02562 * 10 8 7 12 12 C 1.38078 * 107.68307 * 179.97438 * 11 10 8 13 13 C 1.39511 * 107.56641 * 359.97438 * 12 11 10 14 14 C 1.40617 * 132.41236 * 180.02562 * 13 12 11 15 15 C 1.36298 * 119.15908 * 179.33140 * 14 13 12 16 16 C 1.39961 * 120.03642 * 0.52717 * 15 14 13 17 17 N 1.30646 * 120.99489 * 359.66933 * 16 15 14 18 18 N 1.37153 * 108.20385 * 359.76977 * 13 12 11 19 19 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 20 20 C 1.54911 * 101.58329 * 35.30275 * 19 5 3 21 21 N 1.47013 * 109.88458 * 66.82841 * 3 2 1 22 22 C 1.36939 * 125.64991 * 298.39848 * 21 3 2 23 23 H 1.07997 * 119.99481 * 325.75931 * 22 21 3 24 24 C 1.38811 * 120.00056 * 145.75910 * 22 21 3 25 25 N 1.31621 * 120.00421 * 339.04666 * 24 22 21 26 26 Si 1.86799 * 119.99670 * 159.04544 * 24 22 21 27 27 H 1.48509 * 109.47062 * 269.99861 * 26 24 22 28 28 H 1.48498 * 109.47474 * 30.00095 * 26 24 22 29 29 H 1.48500 * 109.47061 * 150.00517 * 26 24 22 30 30 H 1.09001 * 109.47409 * 291.18103 * 1 2 3 31 31 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 32 32 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 33 33 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 34 34 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 35 35 H 0.96999 * 119.99485 * 20.15137 * 7 5 3 36 36 H 1.08007 * 126.16251 * 359.92883 * 11 10 8 37 37 H 1.08002 * 126.21864 * 180.02562 * 12 11 10 38 38 H 1.08005 * 120.41829 * 359.96316 * 14 13 12 39 39 H 1.08001 * 119.97950 * 180.17490 * 15 14 13 40 40 H 1.08000 * 119.50357 * 179.65146 * 16 15 14 41 41 H 1.08994 * 111.00114 * 277.22922 * 19 5 3 42 42 H 1.09000 * 111.03428 * 153.39530 * 19 5 3 43 43 H 1.08995 * 110.36400 * 204.14906 * 20 19 5 44 44 H 1.09007 * 110.45948 * 81.87288 * 20 19 5 45 45 H 0.97000 * 119.99107 * 353.68788 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 4.0005 0.5125 0.2217 7 7 3.9926 1.7425 -1.4951 8 6 5.2318 1.4106 -1.9083 9 8 6.0073 0.8740 -1.1377 10 6 5.6323 1.6861 -3.2393 11 6 6.8759 1.3970 -3.7932 12 6 6.8592 1.8226 -5.1067 13 6 5.6013 2.3726 -5.3551 14 6 5.0292 2.9521 -6.5014 15 6 3.7432 3.4007 -6.4474 16 6 3.0126 3.2920 -5.2586 17 7 3.5418 2.7578 -4.1902 18 7 4.8579 2.2781 -4.2063 19 6 3.9906 2.6157 0.8286 20 6 2.9392 2.4821 1.9584 21 7 1.6938 2.0952 1.2710 22 6 0.4247 2.3040 1.7413 23 1 -0.3789 2.5148 1.0513 24 6 0.1713 2.2446 3.1048 25 7 1.0006 1.6038 3.9011 26 14 -1.3468 3.0741 3.8095 27 1 -1.0178 4.4731 4.1836 28 1 -2.4280 3.0751 2.7916 29 1 -1.8013 2.3336 5.0138 30 1 -0.3634 0.3713 0.9582 31 1 -0.3634 0.6442 -0.8007 32 1 -0.3634 -1.0155 -0.1576 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3747 2.1696 -2.1088 36 1 7.7051 0.9254 -3.2868 37 1 7.6718 1.7434 -5.8136 38 1 5.5981 3.0315 -7.4160 39 1 3.2897 3.8455 -7.3209 40 1 1.9962 3.6553 -5.2238 41 1 3.9052 3.5799 0.3275 42 1 4.9993 2.4659 1.2138 43 1 2.8095 3.4355 2.4705 44 1 3.2373 1.7092 2.6668 45 1 1.7377 1.0965 3.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087753220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:53 Heat of formation + Delta-G solvation = 70.667146 kcal Electronic energy + Delta-G solvation = -28268.514539 eV Core-core repulsion = 24480.611354 eV Total energy + Delta-G solvation = -3787.903185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.06879 -41.00622 -39.53558 -38.12830 -35.85112 -34.55159 -34.20712 -33.59588 -31.50538 -30.83224 -29.82693 -28.43356 -26.49875 -25.61004 -24.41113 -23.56942 -22.65630 -21.83299 -21.68700 -21.22656 -19.64289 -19.22107 -18.22461 -17.61156 -17.00512 -16.86851 -16.79840 -16.15423 -16.06697 -15.64499 -15.58401 -15.26644 -15.01310 -14.70173 -14.57735 -14.15759 -14.07201 -13.90743 -13.66245 -13.36760 -13.16934 -13.09057 -12.89588 -12.71291 -12.57386 -12.24072 -11.93721 -11.90248 -11.81605 -11.75506 -11.64279 -11.55926 -11.40820 -11.26732 -10.47440 -10.22394 -9.99320 -8.92968 -8.84010 -8.15410 -5.46227 -0.50448 -0.11941 0.83392 1.21197 1.58658 1.66520 1.83049 2.09251 2.21885 2.36280 2.65673 3.14135 3.25201 3.42411 3.57371 3.68003 3.71191 3.77220 3.94398 3.97486 4.03648 4.20216 4.30825 4.32957 4.41307 4.45434 4.49321 4.60751 4.73903 4.76391 4.80036 4.86915 4.92683 4.98349 4.99265 5.08907 5.10973 5.16660 5.20957 5.27136 5.48138 5.60520 5.61098 5.67792 5.85731 6.37900 6.39408 6.59596 6.92491 7.07958 7.69972 8.35007 9.04602 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.003225 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.773227 B = 8681.274163 C = 9398.416815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 C 0.159 3.841 4 H 0.042 0.958 5 C 0.147 3.853 6 H 0.076 0.924 7 N -0.706 5.706 8 C 0.583 3.417 9 O -0.580 6.580 10 C -0.078 4.078 11 C -0.084 4.084 12 C -0.171 4.171 13 C 0.004 3.996 14 C -0.016 4.016 15 C -0.181 4.181 16 C 0.145 3.855 17 N -0.330 5.330 18 N -0.245 5.245 19 C -0.127 4.127 20 C 0.147 3.853 21 N -0.604 5.604 22 C -0.316 4.316 23 H 0.057 0.943 24 C -0.073 4.073 25 N -0.944 5.944 26 Si 1.118 2.882 27 H -0.286 1.286 28 H -0.267 1.267 29 H -0.296 1.296 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.412 0.588 36 H 0.168 0.832 37 H 0.194 0.806 38 H 0.198 0.802 39 H 0.197 0.803 40 H 0.232 0.768 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.008 0.992 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.888 4.672 -28.320 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.053 3.947 4 H 0.059 0.941 5 C 0.042 3.958 6 H 0.094 0.906 7 N -0.359 5.359 8 C 0.374 3.626 9 O -0.462 6.462 10 C -0.194 4.194 11 C -0.110 4.110 12 C -0.195 4.195 13 C -0.109 4.109 14 C -0.042 4.042 15 C -0.204 4.204 16 C -0.045 4.045 17 N -0.141 5.141 18 N -0.008 5.008 19 C -0.167 4.167 20 C 0.022 3.978 21 N -0.330 5.330 22 C -0.446 4.446 23 H 0.075 0.925 24 C -0.270 4.270 25 N -0.586 5.586 26 Si 0.943 3.057 27 H -0.213 1.213 28 H -0.192 1.192 29 H -0.223 1.223 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.251 0.749 36 H 0.185 0.815 37 H 0.211 0.789 38 H 0.215 0.785 39 H 0.215 0.785 40 H 0.248 0.752 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.025 0.975 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.946 4.534 -25.247 26.331 hybrid contribution 0.856 -0.366 -1.542 1.801 sum 6.802 4.167 -26.789 27.951 Atomic orbital electron populations 1.21710 0.95031 1.00225 1.02486 1.21791 0.97489 0.96953 0.99422 1.21242 0.90694 0.92554 0.90226 0.94077 1.21740 0.94702 0.97953 0.81447 0.90635 1.46054 1.14903 1.61744 1.13149 1.16138 0.81868 0.78287 0.86297 1.90815 1.53355 1.45961 1.56031 1.19314 0.94031 1.16128 0.89884 1.21568 0.94253 0.99915 0.95273 1.21470 0.96390 1.04993 0.96683 1.20209 0.94462 1.07354 0.88879 1.21539 0.95480 0.90724 0.96506 1.22019 0.94761 1.03455 1.00147 1.24918 1.02161 0.88931 0.88479 1.75509 0.91886 1.17719 1.28989 1.45835 1.07547 1.37266 1.10137 1.23016 0.98488 0.98418 0.96766 1.21424 0.86414 0.96512 0.93497 1.44636 1.01648 1.66484 1.20213 1.19744 0.85616 1.45980 0.93214 0.92538 1.27313 1.05864 0.99197 0.94670 1.70840 1.18522 1.30762 1.38433 0.82810 0.72531 0.75190 0.75205 1.21293 1.19215 1.22284 0.92555 0.93154 0.92971 0.92225 0.94941 0.74868 0.81485 0.78881 0.78457 0.78538 0.75158 0.91075 0.90940 0.95273 0.97465 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 9.15 71.98 0.66 -4.94 16 2 C -0.12 -4.94 5.46 30.59 0.17 -4.78 16 3 C 0.16 6.97 2.99 45.35 0.14 7.11 16 4 H 0.04 1.77 7.68 -2.39 -0.02 1.75 16 5 C 0.15 6.11 2.76 46.18 0.13 6.24 16 6 H 0.08 3.40 7.40 -2.39 -0.02 3.38 16 7 N -0.71 -25.96 5.20 -445.73 -2.32 -28.28 16 8 C 0.58 21.89 7.59 85.09 0.65 22.54 16 9 O -0.58 -25.16 16.51 -4.63 -0.08 -25.24 16 10 C -0.08 -2.41 6.84 39.36 0.27 -2.14 16 11 C -0.08 -2.08 10.49 22.46 0.24 -1.84 16 12 C -0.17 -2.91 10.92 22.54 0.25 -2.67 16 13 C 0.00 0.08 6.80 39.20 0.27 0.35 16 14 C -0.02 -0.14 10.11 22.40 0.23 0.09 16 15 C -0.18 -1.05 10.04 22.24 0.22 -0.83 16 16 C 0.14 1.68 11.29 85.29 0.96 2.64 16 17 N -0.33 -7.46 9.68 -57.06 -0.55 -8.01 16 18 N -0.24 -6.22 4.01 -180.12 -0.72 -6.95 16 19 C -0.13 -5.41 6.77 31.99 0.22 -5.19 16 20 C 0.15 7.41 5.81 86.86 0.50 7.91 16 21 N -0.60 -31.07 2.82 -668.25 -1.88 -32.95 16 22 C -0.32 -17.44 7.01 84.03 0.59 -16.86 16 23 H 0.06 3.09 7.66 -2.91 -0.02 3.07 16 24 C -0.07 -4.18 5.23 84.86 0.44 -3.73 16 25 N -0.94 -58.67 13.14 21.65 0.28 -58.38 16 26 Si 1.12 51.21 29.97 68.60 2.06 53.27 16 27 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 30 H 0.06 2.71 5.69 -2.39 -0.01 2.70 16 31 H 0.05 1.89 8.12 -2.38 -0.02 1.87 16 32 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.41 14.05 5.91 -92.71 -0.55 13.50 16 36 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.20 -0.09 8.06 -2.91 -0.02 -0.11 16 39 H 0.20 -0.61 8.06 -2.91 -0.02 -0.63 16 40 H 0.23 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.01 0.41 6.68 -2.38 -0.02 0.40 16 45 H 0.25 16.29 6.18 -92.71 -0.57 15.72 16 Total: -1.00 -80.76 366.36 3.37 -77.39 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.66 Total: 25.25 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 5.92 Total: 3.90 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -5.19 Total: -134.58 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.08 Total: -25.24 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.06 Total: 53.27 kcal Total: -80.76 3.37 -77.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087753220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.059 kcal (2) G-P(sol) polarization free energy of solvation -80.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds