Wall clock time and date at job start Tue Mar 31 2020 14:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47019 * 2 1 4 4 H 1.09003 * 109.99574 * 302.67151 * 3 2 1 5 5 C 1.54329 * 109.88283 * 181.58193 * 3 2 1 6 6 H 1.09001 * 110.86957 * 336.82407 * 5 3 2 7 7 N 1.46504 * 110.71991 * 100.02086 * 5 3 2 8 8 C 1.34773 * 119.99607 * 199.97589 * 7 5 3 9 9 O 1.21634 * 120.00432 * 0.02562 * 8 7 5 10 10 C 1.47223 * 119.99445 * 180.02562 * 8 7 5 11 11 C 1.38945 * 120.86507 * 0.02562 * 10 8 7 12 12 C 1.39739 * 119.29690 * 179.97438 * 11 10 8 13 13 C 1.35112 * 121.14243 * 0.02562 * 12 11 10 14 14 N 1.36145 * 121.72038 * 359.97438 * 13 12 11 15 15 C 1.36998 * 132.64187 * 180.02562 * 14 13 12 16 16 C 1.34958 * 107.15368 * 180.20534 * 15 14 13 17 17 N 1.33742 * 108.60588 * 359.60973 * 16 15 14 18 18 C 1.31988 * 109.16414 * 0.39919 * 17 16 15 19 19 C 1.55150 * 102.93903 * 218.38702 * 5 3 2 20 20 C 1.54907 * 101.58699 * 35.50149 * 19 5 3 21 21 N 1.47016 * 109.88595 * 63.76847 * 3 2 1 22 22 C 1.36932 * 125.65147 * 298.32504 * 21 3 2 23 23 H 1.07998 * 120.00025 * 326.04985 * 22 21 3 24 24 C 1.38820 * 120.00123 * 146.04416 * 22 21 3 25 25 N 1.31612 * 119.99702 * 162.68775 * 24 22 21 26 26 Si 1.86800 * 119.99760 * 342.69105 * 24 22 21 27 27 H 1.48500 * 109.47130 * 86.84423 * 26 24 22 28 28 H 1.48502 * 109.46933 * 206.84044 * 26 24 22 29 29 H 1.48491 * 109.47234 * 326.84157 * 26 24 22 30 30 H 1.09001 * 109.47066 * 171.95819 * 1 2 3 31 31 H 1.09008 * 109.47339 * 291.95331 * 1 2 3 32 32 H 1.08999 * 109.47380 * 51.95558 * 1 2 3 33 33 H 1.08994 * 109.46922 * 239.99651 * 2 1 3 34 34 H 1.09004 * 109.46907 * 119.99706 * 2 1 3 35 35 H 0.96997 * 119.99791 * 19.98142 * 7 5 3 36 36 H 1.08001 * 120.34807 * 359.95827 * 11 10 8 37 37 H 1.07999 * 119.42831 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.14002 * 179.97438 * 13 12 11 39 39 H 1.08006 * 126.42125 * 359.94053 * 15 14 13 40 40 H 1.08002 * 125.69469 * 179.75397 * 16 15 14 41 41 H 1.09004 * 111.00280 * 153.57874 * 19 5 3 42 42 H 1.09006 * 111.00405 * 277.42091 * 19 5 3 43 43 H 1.09002 * 110.36528 * 81.82792 * 20 19 5 44 44 H 1.08996 * 110.36514 * 204.14992 * 20 19 5 45 45 H 0.97005 * 119.99622 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6429 1.9782 -0.8622 5 6 3.5827 1.4538 -0.0401 6 1 3.9879 0.5167 0.3417 7 7 4.0640 1.7084 -1.4001 8 6 5.3225 1.3700 -1.7439 9 8 6.0584 0.8527 -0.9252 10 6 5.8063 1.6264 -3.1105 11 6 4.9811 2.2167 -4.0598 12 6 5.4744 2.4456 -5.3471 13 6 6.7373 2.1024 -5.6827 14 7 7.5832 1.5217 -4.7878 15 6 8.8803 1.0911 -4.8813 16 6 9.2204 0.5874 -3.6763 17 7 8.1733 0.7069 -2.8529 18 6 7.1712 1.2663 -3.5048 19 6 3.9460 2.6328 0.9007 20 6 2.8401 2.5221 1.9797 21 7 1.6305 2.1176 1.2401 22 6 0.3396 2.3354 1.6415 23 1 -0.4285 2.5300 0.9077 24 6 0.0182 2.3059 2.9917 25 7 -1.1103 2.8376 3.4112 26 14 1.1874 1.5116 4.2129 27 1 2.1908 2.5111 4.6595 28 1 0.4200 1.0223 5.3864 29 1 1.8807 0.3701 3.5639 30 1 -0.3633 -1.0176 -0.1438 31 1 -0.3634 0.3842 0.9532 32 1 -0.3634 0.6333 -0.8093 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.4770 2.1206 -2.0531 36 1 3.9692 2.4955 -3.8055 37 1 4.8347 2.9039 -6.0867 38 1 7.0850 2.2937 -6.6872 39 1 9.5110 1.1410 -5.7567 40 1 10.1790 0.1614 -3.4192 41 1 4.9344 2.4930 1.3385 42 1 3.8848 3.5856 0.3746 43 1 3.1046 1.7648 2.7177 44 1 2.6843 3.4864 2.4634 45 1 -1.3351 2.8167 4.3546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087761016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:22 Heat of formation + Delta-G solvation = 91.177864 kcal Electronic energy + Delta-G solvation = -27947.301058 eV Core-core repulsion = 24160.287285 eV Total energy + Delta-G solvation = -3787.013773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.96335 -39.82169 -38.02667 -37.39712 -34.24460 -33.71739 -32.43593 -32.09285 -30.60958 -29.59986 -28.79403 -27.05671 -25.16979 -24.06014 -22.89645 -22.28333 -22.05407 -21.12790 -20.34385 -19.52851 -18.08754 -17.61431 -17.03323 -16.70048 -16.17903 -15.96273 -15.74780 -15.08294 -14.71261 -14.57883 -14.37079 -13.85364 -13.80192 -13.55579 -13.13734 -12.87941 -12.79687 -12.56588 -12.39291 -12.19741 -12.12541 -11.83785 -11.37289 -11.13076 -11.03624 -10.79689 -10.62031 -10.40838 -10.24316 -10.23694 -10.07972 -9.87931 -9.74670 -9.44812 -9.13679 -8.79479 -8.53411 -8.21712 -6.88428 -5.99390 -3.40129 0.00009 0.95128 2.17220 2.50062 2.79368 3.15605 3.37677 3.49567 3.53044 3.55108 3.79967 4.02259 4.28913 4.43553 4.51032 4.54214 4.90028 5.02448 5.12127 5.17840 5.19358 5.24292 5.33221 5.35810 5.51975 5.56947 5.64702 5.84678 5.94047 5.99154 6.00255 6.15603 6.22834 6.34215 6.37459 6.46616 6.58682 6.66661 6.67627 6.68491 6.79753 6.81566 7.07454 7.43106 7.59564 7.70945 7.86776 8.30288 8.33820 8.82143 9.64648 10.20283 11.15992 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.002920 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.421408 B = 9587.724506 C =10092.178830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.157 3.843 4 H 0.045 0.955 5 C 0.136 3.864 6 H 0.096 0.904 7 N -0.712 5.712 8 C 0.558 3.442 9 O -0.503 6.503 10 C -0.084 4.084 11 C -0.059 4.059 12 C -0.154 4.154 13 C 0.081 3.919 14 N -0.373 5.373 15 C -0.100 4.100 16 C 0.028 3.972 17 N -0.459 5.459 18 C 0.252 3.748 19 C -0.141 4.141 20 C 0.117 3.883 21 N -0.598 5.598 22 C -0.235 4.235 23 H 0.088 0.912 24 C 0.032 3.968 25 N -0.906 5.906 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.302 1.302 29 H -0.270 1.270 30 H 0.028 0.972 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.396 0.604 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.059 0.941 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.286 -0.674 -21.929 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.050 3.950 4 H 0.063 0.937 5 C 0.032 3.968 6 H 0.114 0.886 7 N -0.364 5.364 8 C 0.343 3.657 9 O -0.377 6.377 10 C -0.090 4.090 11 C -0.083 4.083 12 C -0.175 4.175 13 C -0.042 4.042 14 N -0.046 5.046 15 C -0.230 4.230 16 C -0.122 4.122 17 N -0.176 5.176 18 C 0.005 3.995 19 C -0.180 4.180 20 C -0.009 4.009 21 N -0.325 5.325 22 C -0.362 4.362 23 H 0.105 0.895 24 C -0.168 4.168 25 N -0.548 5.548 26 Si 0.711 3.289 27 H -0.211 1.211 28 H -0.230 1.230 29 H -0.196 1.196 30 H 0.048 0.952 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.202 0.798 40 H 0.199 0.801 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.682 -1.274 -20.357 25.728 hybrid contribution 0.440 0.010 -0.554 0.707 sum 16.122 -1.264 -20.911 26.434 Atomic orbital electron populations 1.21913 0.95155 0.98937 1.04781 1.21893 0.97421 0.97176 0.99921 1.21229 0.89389 0.92474 0.91919 0.93737 1.22138 0.95089 0.99270 0.80326 0.88582 1.45897 1.13076 1.63207 1.14204 1.17532 0.82259 0.79634 0.86311 1.90891 1.54864 1.41142 1.50845 1.20291 0.89645 1.03524 0.95577 1.21713 0.99775 0.94675 0.92137 1.20643 0.94770 1.04182 0.97911 1.21667 0.90782 0.96645 0.95112 1.42945 1.11129 1.39319 1.11249 1.22689 0.84846 1.12236 1.03199 1.22731 0.98983 1.01183 0.89335 1.70859 0.98611 1.18096 1.30080 1.21576 0.95149 1.01941 0.80803 1.23136 0.99042 0.98096 0.97758 1.21929 0.86560 0.98532 0.93831 1.44696 1.01785 1.64628 1.21357 1.18435 0.83146 1.42572 0.92058 0.89488 1.25374 0.95660 0.98493 0.97292 1.69786 1.24297 1.45356 1.15391 0.86873 0.80311 0.80929 0.80775 1.21138 1.22988 1.19579 0.95240 0.88611 0.94015 0.93950 0.92577 0.76827 0.83196 0.82487 0.81794 0.79832 0.80072 0.91209 0.91029 0.95783 0.92267 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.02 37.16 0.34 -2.54 16 2 C -0.12 -2.29 5.49 -26.73 -0.15 -2.44 16 3 C 0.16 2.92 3.02 -66.95 -0.20 2.72 16 4 H 0.05 0.79 7.69 -51.93 -0.40 0.39 16 5 C 0.14 2.32 2.76 -66.09 -0.18 2.14 16 6 H 0.10 1.80 7.41 -51.93 -0.38 1.42 16 7 N -0.71 -9.85 5.16 -53.16 -0.27 -10.12 16 8 C 0.56 8.69 7.77 -12.61 -0.10 8.59 16 9 O -0.50 -10.04 15.92 5.25 0.08 -9.95 16 10 C -0.08 -1.07 6.06 -102.63 -0.62 -1.70 16 11 C -0.06 -0.48 9.63 -38.76 -0.37 -0.85 16 12 C -0.15 -0.87 9.91 -40.13 -0.40 -1.27 16 13 C 0.08 0.51 10.88 -16.75 -0.18 0.33 16 14 N -0.37 -3.73 2.94 -61.09 -0.18 -3.91 16 15 C -0.10 -0.86 11.76 -16.41 -0.19 -1.06 16 16 C 0.03 0.31 11.83 -17.88 -0.21 0.10 16 17 N -0.46 -7.23 10.70 -11.32 -0.12 -7.35 16 18 C 0.25 3.52 7.67 -154.13 -1.18 2.34 16 19 C -0.14 -2.51 6.77 -24.59 -0.17 -2.68 16 20 C 0.12 2.50 4.97 -2.53 -0.01 2.49 16 21 N -0.60 -13.59 2.71 -162.57 -0.44 -14.03 16 22 C -0.23 -6.18 7.35 -15.06 -0.11 -6.29 16 23 H 0.09 2.45 7.81 -52.49 -0.41 2.04 16 24 C 0.03 0.90 5.46 -17.43 -0.10 0.80 16 25 N -0.91 -26.97 13.97 55.49 0.78 -26.19 16 26 Si 0.88 22.40 24.63 -169.99 -4.19 18.21 16 27 H -0.28 -7.11 7.10 56.52 0.40 -6.70 16 28 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 29 H -0.27 -6.83 6.85 56.52 0.39 -6.44 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.10 2.19 5.60 -51.92 -0.29 1.90 16 32 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.40 4.22 6.41 -40.82 -0.26 3.95 16 36 H 0.15 0.83 6.48 -52.49 -0.34 0.49 16 37 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 38 H 0.16 0.38 8.06 -52.48 -0.42 -0.04 16 39 H 0.18 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.02 0.55 5.33 -51.93 -0.28 0.28 16 44 H 0.06 1.32 7.98 -51.93 -0.41 0.91 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -36.16 361.50 -8.89 -45.05 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.15 Total: 2.16 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.84 Total: 0.69 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.24 Total: -61.61 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.19 Total: 18.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.16 -8.89 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087761016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.233 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds