Wall clock time and date at job start Tue Mar 31 2020 16:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47287 * 2 1 4 4 O 1.42896 * 109.47421 * 239.99704 * 2 1 3 5 5 C 1.35751 * 117.00087 * 270.00631 * 4 2 1 6 6 N 1.32262 * 120.11927 * 359.97438 * 5 4 2 7 7 C 1.32416 * 120.02101 * 179.97438 * 6 5 4 8 8 C 1.37959 * 120.25827 * 0.02835 * 7 6 5 9 9 N 1.32393 * 120.23514 * 359.95287 * 8 7 6 10 10 C 1.32470 * 119.97441 * 359.77423 * 9 8 7 11 11 N 1.39177 * 120.12790 * 180.25192 * 10 9 8 12 12 C 1.46893 * 111.00230 * 124.20000 * 11 10 9 13 13 C 1.50702 * 109.47499 * 302.74172 * 12 11 10 14 14 H 1.08000 * 119.99633 * 355.07974 * 13 12 11 15 15 C 1.37875 * 120.00126 * 175.07176 * 13 12 11 16 16 N 1.31515 * 120.00394 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99583 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47329 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46987 * 120.00585 * 17 15 13 20 20 H 1.48504 * 109.47170 * 240.00260 * 17 15 13 21 21 C 1.46903 * 111.00101 * 0.24871 * 11 10 9 22 22 C 1.50694 * 109.47390 * 195.90955 * 21 11 10 23 23 C 1.38681 * 120.41750 * 264.18051 * 22 21 11 24 24 C 1.38623 * 118.42018 * 179.78367 * 23 22 21 25 25 C 1.38221 * 119.16232 * 0.51185 * 24 23 22 26 26 N 1.31859 * 120.76556 * 359.72336 * 25 24 23 27 27 C 1.31894 * 121.71964 * 0.02562 * 26 25 24 28 28 H 1.08993 * 109.47072 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47279 * 300.00237 * 1 2 3 30 30 H 1.09005 * 109.46746 * 60.00310 * 1 2 3 31 31 H 1.09005 * 109.46746 * 119.99690 * 2 1 3 32 32 H 1.09003 * 109.47155 * 59.99687 * 3 2 1 33 33 H 1.08994 * 109.47300 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47043 * 299.99930 * 3 2 1 35 35 H 1.07995 * 119.87270 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.87903 * 179.97438 * 8 7 6 37 37 H 1.09007 * 109.46985 * 62.74095 * 12 11 10 38 38 H 1.09000 * 109.47685 * 182.73951 * 12 11 10 39 39 H 0.96999 * 120.00145 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.46884 * 315.91047 * 21 11 10 41 41 H 1.09001 * 109.47254 * 75.90671 * 21 11 10 42 42 H 1.07998 * 120.78818 * 0.02562 * 23 22 21 43 43 H 1.08002 * 120.42118 * 180.21974 * 24 23 22 44 44 H 1.07996 * 119.62081 * 179.75259 * 25 24 23 45 45 H 1.08002 * 119.60864 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 -2.0117 -1.0651 6 7 1.9727 -2.6350 0.0767 7 6 2.1732 -3.9404 0.1735 8 6 2.6320 -4.6557 -0.9133 9 7 2.8742 -4.0421 -2.0612 10 6 2.6717 -2.7375 -2.1699 11 7 2.9203 -2.0901 -3.3767 12 6 1.7285 -1.3687 -3.8423 13 6 0.5781 -2.3329 -3.9768 14 1 0.7373 -3.3891 -3.8171 15 6 -0.6776 -1.8666 -4.3036 16 7 -0.8715 -0.5805 -4.4984 17 14 -2.1033 -3.0620 -4.4709 18 1 -1.6258 -4.4425 -4.2040 19 1 -3.1637 -2.7077 -3.4934 20 1 -2.6541 -2.9858 -5.8479 21 6 3.3932 -3.0377 -4.3948 22 6 4.0153 -2.2779 -5.5378 23 6 3.2704 -1.9756 -6.6679 24 6 3.8828 -1.2710 -7.6927 25 6 5.2090 -0.9051 -7.5597 26 7 5.8882 -1.2139 -6.4725 27 6 5.3367 -1.8788 -5.4759 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.9769 -4.4470 1.1068 36 1 2.7938 -5.7200 -0.8275 37 1 1.4694 -0.5922 -3.1225 38 1 1.9351 -0.9123 -4.8104 39 1 -1.7550 -0.2525 -4.7278 40 1 4.1354 -3.7035 -3.9545 41 1 2.5520 -3.6246 -4.7636 42 1 2.2367 -2.2785 -6.7460 43 1 3.3319 -1.0153 -8.5858 44 1 5.6946 -0.3595 -8.3553 45 1 5.9249 -2.1142 -4.6012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:44 Heat of formation + Delta-G solvation = 59.864629 kcal Electronic energy + Delta-G solvation = -28985.321942 eV Core-core repulsion = 25196.950326 eV Total energy + Delta-G solvation = -3788.371617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88183 -39.73590 -38.14589 -36.98368 -33.38163 -32.83310 -32.75547 -31.84148 -31.17170 -29.18021 -27.24966 -26.89794 -25.69251 -23.85915 -23.46469 -23.04675 -21.99820 -21.07120 -20.23028 -17.98496 -17.34852 -16.90171 -16.60473 -16.20033 -15.79553 -15.42898 -14.83949 -14.62187 -14.43502 -14.32484 -14.00672 -13.72492 -13.21605 -13.07278 -13.03045 -12.73679 -12.57995 -12.51231 -12.11191 -11.94659 -11.67899 -11.60058 -11.23713 -11.20372 -11.07892 -10.81839 -10.72189 -10.59040 -10.41568 -10.25971 -10.07458 -9.87274 -9.36084 -9.09544 -8.84669 -8.66638 -8.55209 -8.38733 -7.15900 -6.16846 -4.25179 1.47061 1.53953 1.71766 1.73379 3.16850 3.26225 3.30226 3.43831 4.06783 4.24265 4.30768 4.57274 4.67573 4.79519 4.90557 5.16005 5.21745 5.23314 5.27100 5.33719 5.42280 5.45327 5.51867 5.56545 5.62644 5.76760 5.83518 5.86784 6.05113 6.08502 6.09136 6.18389 6.21493 6.41456 6.45687 6.55235 6.57672 6.69668 6.81501 7.00337 7.11978 7.34939 7.52965 7.71087 7.78086 7.84833 7.95238 8.13765 8.32706 8.42490 8.82912 9.40955 10.88602 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008852 B = 0.005562 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.373640 B = 5033.233711 C = 5958.375805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 C -0.148 4.148 4 O -0.269 6.269 5 C 0.284 3.716 6 N -0.490 5.490 7 C 0.028 3.972 8 C 0.026 3.974 9 N -0.464 5.464 10 C 0.313 3.687 11 N -0.464 5.464 12 C 0.185 3.815 13 C -0.552 4.552 14 H 0.058 0.942 15 C 0.074 3.926 16 N -0.880 5.880 17 Si 0.883 3.117 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.281 1.281 21 C 0.106 3.894 22 C -0.114 4.114 23 C -0.053 4.053 24 C -0.176 4.176 25 C 0.085 3.915 26 N -0.494 5.494 27 C 0.110 3.890 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.263 0.737 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.129 0.871 44 H 0.148 0.852 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -1.819 4.220 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.205 4.205 4 O -0.174 6.174 5 C 0.095 3.905 6 N -0.219 5.219 7 C -0.128 4.128 8 C -0.131 4.131 9 N -0.185 5.185 10 C 0.072 3.928 11 N -0.181 5.181 12 C 0.062 3.938 13 C -0.591 4.591 14 H 0.076 0.924 15 C -0.130 4.130 16 N -0.518 5.518 17 Si 0.711 3.289 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.207 1.207 21 C -0.022 4.022 22 C -0.117 4.117 23 C -0.079 4.079 24 C -0.196 4.196 25 C -0.072 4.072 26 N -0.203 5.203 27 C -0.047 4.047 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.158 0.842 43 H 0.147 0.853 44 H 0.165 0.835 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.701 -0.855 4.069 8.752 hybrid contribution -2.659 -1.425 -0.051 3.017 sum 5.042 -2.279 4.019 6.839 Atomic orbital electron populations 1.22161 0.94932 1.02888 1.02248 1.22261 0.94584 0.92658 0.88159 1.21867 1.01523 0.94375 1.02739 1.86588 1.79328 1.14729 1.36742 1.20201 0.94578 0.86019 0.89728 1.67853 1.18469 1.11430 1.24191 1.22923 1.00510 0.89204 1.00154 1.23131 0.99700 1.01000 0.89264 1.68463 1.17944 1.06771 1.25342 1.19868 0.93420 0.87446 0.92058 1.59589 1.33803 1.24170 1.00529 1.20195 0.82005 0.94123 0.97460 1.21688 0.94199 0.93897 1.49341 0.92351 1.24841 0.98406 0.94939 0.94806 1.69945 1.22824 1.12421 1.46587 0.86665 0.82744 0.81597 0.77898 1.19792 1.20881 1.20730 1.20805 0.99771 0.92442 0.89132 1.20858 0.95061 0.99645 0.96109 1.21732 1.00286 0.93895 0.92016 1.22090 0.96471 1.00738 1.00332 1.22607 0.91736 0.97431 0.95433 1.67648 1.39130 1.12252 1.01267 1.22549 0.92552 0.93444 0.96150 0.92226 0.92134 0.91201 0.90246 0.91148 0.92184 0.91326 0.82443 0.82335 0.91517 0.93995 0.92744 0.89773 0.91005 0.84163 0.85273 0.83498 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.53 37.16 0.35 -2.43 16 2 C 0.08 1.35 3.12 -26.73 -0.08 1.26 16 3 C -0.15 -2.06 9.56 37.16 0.36 -1.70 16 4 O -0.27 -5.55 7.09 -18.96 -0.13 -5.68 16 5 C 0.28 5.85 7.21 -16.72 -0.12 5.73 16 6 N -0.49 -9.00 8.82 -12.97 -0.11 -9.11 16 7 C 0.03 0.43 11.20 -17.40 -0.19 0.23 16 8 C 0.03 0.40 11.20 -17.41 -0.20 0.21 16 9 N -0.46 -8.83 8.65 -12.10 -0.10 -8.93 16 10 C 0.31 6.53 5.17 -154.48 -0.80 5.73 16 11 N -0.46 -9.85 4.62 -175.58 -0.81 -10.66 16 12 C 0.18 4.48 4.62 -4.98 -0.02 4.46 16 13 C -0.55 -14.31 7.60 -34.44 -0.26 -14.57 16 14 H 0.06 1.57 6.66 -52.49 -0.35 1.22 16 15 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 16 N -0.88 -24.25 13.29 55.43 0.74 -23.51 16 17 Si 0.88 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.11 2.01 4.39 -4.98 -0.02 1.99 16 22 C -0.11 -2.03 4.92 -104.49 -0.51 -2.54 16 23 C -0.05 -0.91 8.54 -39.28 -0.34 -1.25 16 24 C -0.18 -2.64 10.11 -39.45 -0.40 -3.04 16 25 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 26 N -0.49 -8.26 10.36 -13.25 -0.14 -8.40 16 27 C 0.11 1.85 10.88 -17.55 -0.19 1.66 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.28 7.00 -51.93 -0.36 0.92 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.07 1.78 5.67 -51.92 -0.29 1.49 16 38 H 0.04 1.07 6.33 -51.93 -0.33 0.74 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.08 1.50 7.24 -51.93 -0.38 1.12 16 41 H 0.07 1.49 6.49 -51.93 -0.34 1.15 16 42 H 0.14 2.55 8.06 -52.49 -0.42 2.13 16 43 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -30.03 373.30 -8.94 -38.97 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.26 Total: 7.20 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.72 Total: -1.33 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.43 Total: -60.62 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.13 Total: -5.68 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.03 -8.94 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.834 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds