Wall clock time and date at job start Tue Mar 31 2020 16:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47287 * 2 1 4 4 O 1.42896 * 109.47421 * 239.99704 * 2 1 3 5 5 C 1.35751 * 117.00087 * 270.00631 * 4 2 1 6 6 N 1.32262 * 120.11927 * 359.97438 * 5 4 2 7 7 C 1.32416 * 120.02101 * 179.97438 * 6 5 4 8 8 C 1.37959 * 120.25827 * 0.02835 * 7 6 5 9 9 N 1.32393 * 120.23514 * 359.95287 * 8 7 6 10 10 C 1.32470 * 119.97441 * 359.77423 * 9 8 7 11 11 N 1.39177 * 120.12790 * 180.25192 * 10 9 8 12 12 C 1.46893 * 111.00230 * 124.20000 * 11 10 9 13 13 C 1.50702 * 109.47499 * 302.74172 * 12 11 10 14 14 H 1.08000 * 119.99633 * 355.07974 * 13 12 11 15 15 C 1.37875 * 120.00126 * 175.07176 * 13 12 11 16 16 N 1.31515 * 120.00394 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99583 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47329 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46987 * 120.00585 * 17 15 13 20 20 H 1.48504 * 109.47170 * 240.00260 * 17 15 13 21 21 C 1.46903 * 111.00101 * 0.24871 * 11 10 9 22 22 C 1.50694 * 109.47390 * 195.90955 * 21 11 10 23 23 C 1.38681 * 120.41750 * 264.18051 * 22 21 11 24 24 C 1.38623 * 118.42018 * 179.78367 * 23 22 21 25 25 C 1.38221 * 119.16232 * 0.51185 * 24 23 22 26 26 N 1.31859 * 120.76556 * 359.72336 * 25 24 23 27 27 C 1.31894 * 121.71964 * 0.02562 * 26 25 24 28 28 H 1.08993 * 109.47072 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47279 * 300.00237 * 1 2 3 30 30 H 1.09005 * 109.46746 * 60.00310 * 1 2 3 31 31 H 1.09005 * 109.46746 * 119.99690 * 2 1 3 32 32 H 1.09003 * 109.47155 * 59.99687 * 3 2 1 33 33 H 1.08994 * 109.47300 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47043 * 299.99930 * 3 2 1 35 35 H 1.07995 * 119.87270 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.87903 * 179.97438 * 8 7 6 37 37 H 1.09007 * 109.46985 * 62.74095 * 12 11 10 38 38 H 1.09000 * 109.47685 * 182.73951 * 12 11 10 39 39 H 0.96999 * 120.00145 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.46884 * 315.91047 * 21 11 10 41 41 H 1.09001 * 109.47254 * 75.90671 * 21 11 10 42 42 H 1.07998 * 120.78818 * 0.02562 * 23 22 21 43 43 H 1.08002 * 120.42118 * 180.21974 * 24 23 22 44 44 H 1.07996 * 119.62081 * 179.75259 * 25 24 23 45 45 H 1.08002 * 119.60864 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 -2.0117 -1.0651 6 7 1.9727 -2.6350 0.0767 7 6 2.1732 -3.9404 0.1735 8 6 2.6320 -4.6557 -0.9133 9 7 2.8742 -4.0421 -2.0612 10 6 2.6717 -2.7375 -2.1699 11 7 2.9203 -2.0901 -3.3767 12 6 1.7285 -1.3687 -3.8423 13 6 0.5781 -2.3329 -3.9768 14 1 0.7373 -3.3891 -3.8171 15 6 -0.6776 -1.8666 -4.3036 16 7 -0.8715 -0.5805 -4.4984 17 14 -2.1033 -3.0620 -4.4709 18 1 -1.6258 -4.4425 -4.2040 19 1 -3.1637 -2.7077 -3.4934 20 1 -2.6541 -2.9858 -5.8479 21 6 3.3932 -3.0377 -4.3948 22 6 4.0153 -2.2779 -5.5378 23 6 3.2704 -1.9756 -6.6679 24 6 3.8828 -1.2710 -7.6927 25 6 5.2090 -0.9051 -7.5597 26 7 5.8882 -1.2139 -6.4725 27 6 5.3367 -1.8788 -5.4759 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.9769 -4.4470 1.1068 36 1 2.7938 -5.7200 -0.8275 37 1 1.4694 -0.5922 -3.1225 38 1 1.9351 -0.9123 -4.8104 39 1 -1.7550 -0.2525 -4.7278 40 1 4.1354 -3.7035 -3.9545 41 1 2.5520 -3.6246 -4.7636 42 1 2.2367 -2.2785 -6.7460 43 1 3.3319 -1.0153 -8.5858 44 1 5.6946 -0.3595 -8.3553 45 1 5.9249 -2.1142 -4.6012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:43 Heat of formation + Delta-G solvation = 40.200055 kcal Electronic energy + Delta-G solvation = -28986.174662 eV Core-core repulsion = 25196.950326 eV Total energy + Delta-G solvation = -3789.224337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.30592 -41.03423 -39.55068 -38.52678 -34.94311 -34.54680 -34.16975 -33.22483 -32.50280 -30.65639 -28.99662 -28.15634 -27.24010 -25.24578 -25.15598 -24.36016 -23.46236 -22.42577 -21.73230 -19.38629 -18.93931 -18.58273 -17.87672 -17.80795 -17.21123 -16.90228 -16.53226 -16.02432 -15.77446 -15.65855 -15.47344 -15.14426 -14.75831 -14.47709 -14.43799 -14.16676 -14.04751 -13.88108 -13.46434 -13.25448 -13.17524 -13.05309 -12.94964 -12.88412 -12.66124 -12.44189 -12.24426 -12.15613 -12.05150 -11.90364 -11.62835 -11.55264 -10.74569 -10.57430 -10.43714 -10.18349 -10.17387 -9.77245 -8.70655 -8.18410 -6.34992 0.11227 0.24224 0.31291 0.40165 1.27129 1.30887 1.39913 2.08886 2.31112 2.67496 2.91888 3.08286 3.19637 3.32040 3.58498 3.64132 3.84064 3.94437 3.97409 4.06987 4.07373 4.17872 4.20079 4.28604 4.41831 4.45831 4.57080 4.68201 4.79952 4.82058 4.84070 4.84376 4.88056 4.98193 5.10828 5.21678 5.28091 5.28426 5.34101 5.39554 5.46270 5.74347 5.82271 5.84341 6.03055 6.16377 6.42896 6.52626 6.80878 7.01155 7.06037 7.33200 8.83780 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008852 B = 0.005562 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.373640 B = 5033.233711 C = 5958.375805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.073 3.927 3 C -0.141 4.141 4 O -0.296 6.296 5 C 0.257 3.743 6 N -0.495 5.495 7 C 0.041 3.959 8 C 0.027 3.973 9 N -0.473 5.473 10 C 0.275 3.725 11 N -0.468 5.468 12 C 0.208 3.792 13 C -0.546 4.546 14 H 0.046 0.954 15 C 0.030 3.970 16 N -0.909 5.909 17 Si 0.939 3.061 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.119 3.881 22 C -0.129 4.129 23 C -0.071 4.071 24 C -0.171 4.171 25 C 0.089 3.911 26 N -0.507 5.507 27 C 0.107 3.893 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.208 0.792 36 H 0.205 0.795 37 H 0.039 0.961 38 H 0.021 0.979 39 H 0.264 0.736 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.122 0.878 43 H 0.158 0.842 44 H 0.187 0.813 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.092 -2.850 5.229 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.017 3.983 3 C -0.198 4.198 4 O -0.202 6.202 5 C 0.071 3.929 6 N -0.225 5.225 7 C -0.116 4.116 8 C -0.131 4.131 9 N -0.194 5.194 10 C 0.037 3.963 11 N -0.185 5.185 12 C 0.084 3.916 13 C -0.585 4.585 14 H 0.064 0.936 15 C -0.171 4.171 16 N -0.548 5.548 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.008 4.008 22 C -0.132 4.132 23 C -0.097 4.097 24 C -0.191 4.191 25 C -0.068 4.068 26 N -0.216 5.216 27 C -0.050 4.050 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.224 0.776 36 H 0.222 0.778 37 H 0.057 0.943 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.140 0.860 43 H 0.175 0.825 44 H 0.203 0.797 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.243 -1.866 5.066 9.853 hybrid contribution -2.797 -1.232 -0.240 3.066 sum 5.446 -3.098 4.825 7.908 Atomic orbital electron populations 1.22091 0.95335 1.01315 1.02534 1.22535 0.94301 0.93945 0.87479 1.21865 1.01752 0.92602 1.03541 1.86548 1.79733 1.15222 1.38670 1.20328 0.95891 0.86247 0.90451 1.67931 1.18310 1.12877 1.23375 1.23827 0.97636 0.88222 1.01894 1.23964 0.97999 1.02983 0.88160 1.68449 1.17626 1.06156 1.27186 1.19906 0.96124 0.88369 0.91936 1.59501 1.32515 1.25165 1.01280 1.19665 0.83007 0.93449 0.95453 1.21743 0.94934 0.93430 1.48435 0.93569 1.25494 1.00556 0.96250 0.94826 1.70041 1.23316 1.13754 1.47653 0.85804 0.80037 0.79574 0.78126 1.19900 1.20801 1.19798 1.20650 0.98868 0.92130 0.89144 1.20799 0.95706 1.00739 0.95950 1.21731 0.99686 0.95166 0.93140 1.22386 0.96849 0.99394 1.00439 1.23242 0.91592 0.96413 0.95524 1.67719 1.39548 1.12483 1.01824 1.22656 0.92142 0.93444 0.96765 0.94609 0.88520 0.94065 0.89408 0.87757 0.91795 0.92983 0.77576 0.77813 0.94263 0.96100 0.92666 0.88844 0.93566 0.86038 0.82454 0.79660 0.82362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.33 9.53 71.98 0.69 -4.64 16 2 C 0.07 2.49 3.12 30.59 0.10 2.58 16 3 C -0.14 -3.86 9.56 71.98 0.69 -3.17 16 4 O -0.30 -12.71 7.09 -90.77 -0.64 -13.36 16 5 C 0.26 10.79 7.21 85.05 0.61 11.41 16 6 N -0.50 -17.68 8.82 -307.76 -2.72 -20.40 16 7 C 0.04 1.15 11.20 84.54 0.95 2.10 16 8 C 0.03 0.78 11.20 84.54 0.95 1.72 16 9 N -0.47 -17.79 8.65 -192.18 -1.66 -19.45 16 10 C 0.27 11.74 5.17 133.19 0.69 12.43 16 11 N -0.47 -20.81 4.62 -709.42 -3.28 -24.09 16 12 C 0.21 10.70 4.62 85.56 0.40 11.10 16 13 C -0.55 -29.54 7.60 25.60 0.19 -29.34 16 14 H 0.05 2.57 6.66 -2.91 -0.02 2.55 16 15 C 0.03 1.63 5.46 84.65 0.46 2.09 16 16 N -0.91 -51.88 13.29 21.45 0.28 -51.60 16 17 Si 0.94 43.61 29.54 68.60 2.03 45.64 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 C 0.12 4.74 4.39 85.55 0.38 5.12 16 22 C -0.13 -4.76 4.92 -19.78 -0.10 -4.86 16 23 C -0.07 -2.53 8.54 22.47 0.19 -2.34 16 24 C -0.17 -4.98 10.11 22.36 0.23 -4.75 16 25 C 0.09 2.48 11.18 84.68 0.95 3.42 16 26 N -0.51 -16.48 10.36 -195.85 -2.03 -18.51 16 27 C 0.11 3.61 10.88 84.67 0.92 4.53 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.09 2.78 7.00 -2.38 -0.02 2.77 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.21 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.04 2.25 5.67 -2.38 -0.01 2.23 16 38 H 0.02 1.14 6.33 -2.39 -0.02 1.13 16 39 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.09 3.44 7.24 -2.39 -0.02 3.42 16 41 H 0.05 2.03 6.49 -2.39 -0.02 2.01 16 42 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 43 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.16 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -68.78 373.30 1.26 -67.52 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 1.00 Total: 26.83 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 8.28 Total: 7.41 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -9.40 Total: -134.05 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.64 Total: -13.36 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.78 1.26 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.720 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds