Wall clock time and date at job start Tue Mar 31 2020 15:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 N 1.46504 * 109.47400 * 119.99657 * 2 1 3 5 5 C 1.35393 * 126.43952 * 300.03037 * 4 2 1 6 6 C 1.35565 * 107.16114 * 180.20551 * 5 4 2 7 7 N 1.33096 * 108.34797 * 359.59596 * 6 5 4 8 8 C 1.31616 * 109.09805 * 0.40870 * 7 6 5 9 9 C 1.47400 * 125.86898 * 179.72685 * 8 7 6 10 10 O 1.21609 * 120.00270 * 174.34522 * 9 8 7 11 11 N 1.34781 * 119.99924 * 354.34460 * 9 8 7 12 12 C 1.46499 * 120.00006 * 4.30641 * 11 9 8 13 13 C 1.50702 * 109.46782 * 83.54263 * 12 11 9 14 14 H 1.08002 * 120.00324 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99601 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00309 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99848 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47254 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47170 * 120.00030 * 17 15 13 20 20 H 1.48502 * 109.47147 * 240.00169 * 17 15 13 21 21 C 1.46504 * 120.00165 * 184.30775 * 11 9 8 22 22 C 1.50702 * 109.46993 * 90.00031 * 21 11 9 23 23 C 1.38675 * 120.41601 * 269.72248 * 22 21 11 24 24 C 1.38630 * 118.41804 * 179.78444 * 23 22 21 25 25 C 1.38230 * 119.16037 * 0.51362 * 24 23 22 26 26 N 1.31854 * 120.76067 * 359.72033 * 25 24 23 27 27 C 1.31882 * 121.72957 * 0.02562 * 26 25 24 28 28 H 1.09009 * 109.47203 * 300.00089 * 1 2 3 29 29 H 1.08998 * 109.47507 * 59.99704 * 1 2 3 30 30 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47138 * 240.00244 * 2 1 3 32 32 H 1.08998 * 109.47267 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47144 * 299.99607 * 3 2 1 34 34 H 1.08993 * 109.47540 * 60.00017 * 3 2 1 35 35 H 1.07997 * 126.42211 * 359.92922 * 5 4 2 36 36 H 1.08000 * 125.82540 * 179.72670 * 6 5 4 37 37 H 1.08998 * 109.47480 * 203.54029 * 12 11 9 38 38 H 1.09002 * 109.46976 * 323.54694 * 12 11 9 39 39 H 0.96994 * 119.99933 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.47316 * 209.99957 * 21 11 9 41 41 H 1.09000 * 109.46863 * 329.99967 * 21 11 9 42 42 H 1.08004 * 120.79108 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.41967 * 180.21652 * 24 23 22 44 44 H 1.07994 * 119.61755 * 179.75116 * 25 24 23 45 45 H 1.07996 * 119.61663 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7725 -0.3438 2.4817 6 6 2.4141 -1.2425 3.2681 7 7 3.0298 -2.1227 2.4822 8 6 2.8070 -1.8064 1.2242 9 6 3.3201 -2.5309 0.0476 10 8 2.9643 -2.2066 -1.0691 11 7 4.1838 -3.5530 0.2094 12 6 4.5395 -4.0051 1.5567 13 6 3.4891 -4.9619 2.0591 14 1 2.6412 -5.2082 1.4371 15 6 3.6107 -5.5228 3.3127 16 7 4.6429 -5.2225 4.0703 17 14 2.3090 -6.7093 3.9352 18 1 1.2587 -6.8799 2.8994 19 1 2.9357 -8.0240 4.2252 20 1 1.6982 -6.1677 5.1757 21 6 4.7669 -4.2117 -0.9621 22 6 6.0502 -3.5186 -1.3414 23 6 6.0387 -2.4628 -2.2403 24 6 7.2425 -1.8522 -2.5563 25 6 8.4073 -2.3198 -1.9772 26 7 8.3809 -3.3297 -1.1299 27 6 7.2538 -3.9310 -0.8024 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.1804 0.4946 2.8177 36 1 2.4223 -1.2451 4.3481 37 1 5.5057 -4.5088 1.5277 38 1 4.5976 -3.1458 2.2248 39 1 4.7282 -5.6168 4.9523 40 1 4.9737 -5.2557 -0.7265 41 1 4.0657 -4.1593 -1.7950 42 1 5.1134 -2.1217 -2.6808 43 1 7.2705 -1.0248 -3.2499 44 1 9.3497 -1.8522 -2.2212 45 1 7.2717 -4.7554 -0.1050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199410357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:58 Heat of formation + Delta-G solvation = 78.980829 kcal Electronic energy + Delta-G solvation = -28758.140767 eV Core-core repulsion = 24970.598091 eV Total energy + Delta-G solvation = -3787.542676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78590 -40.01988 -38.59465 -36.06931 -35.06213 -32.93621 -32.03780 -31.37299 -30.45633 -29.28537 -27.39244 -27.34020 -26.05810 -23.47990 -23.27071 -22.56831 -22.23284 -21.28654 -20.12005 -18.51737 -16.93532 -16.84871 -16.29132 -16.15370 -15.69127 -15.33570 -15.21097 -14.95219 -14.53887 -14.27542 -13.97472 -13.62565 -13.61074 -13.32669 -13.09863 -12.83218 -12.78437 -12.67944 -12.36610 -12.16654 -12.13453 -11.80469 -11.62065 -11.44826 -11.20936 -11.05517 -10.82583 -10.66967 -10.10349 -9.69754 -9.58985 -9.39574 -9.24462 -9.19078 -8.91982 -8.73383 -8.23351 -8.03199 -7.69076 -5.90990 -3.91494 1.28506 1.50692 1.97310 2.90834 3.23925 3.35334 3.43192 3.47021 3.81130 4.12018 4.21202 4.53126 4.64929 4.66793 4.91361 4.98776 5.05890 5.08840 5.14805 5.19567 5.23135 5.31143 5.37926 5.45737 5.52060 5.57567 5.58999 5.77146 5.81350 5.85942 5.88242 6.04445 6.05242 6.11581 6.12937 6.32261 6.54501 6.70721 6.74231 6.92693 7.15256 7.41706 7.54137 7.85700 7.98755 8.18560 8.21825 8.35801 8.52027 8.87500 9.09287 9.69921 11.17890 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007568 B = 0.006447 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.018226 B = 4342.135072 C = 7117.033884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.107 3.893 3 C -0.157 4.157 4 N -0.418 5.418 5 C -0.045 4.045 6 C -0.036 4.036 7 N -0.374 5.374 8 C 0.145 3.855 9 C 0.607 3.393 10 O -0.581 6.581 11 N -0.564 5.564 12 C 0.223 3.777 13 C -0.506 4.506 14 H 0.050 0.950 15 C 0.072 3.928 16 N -0.888 5.888 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.160 3.840 22 C -0.146 4.146 23 C -0.057 4.057 24 C -0.182 4.182 25 C 0.091 3.909 26 N -0.489 5.489 27 C 0.118 3.882 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.133 0.867 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.027 0.973 38 H 0.086 0.914 39 H 0.259 0.741 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.150 0.850 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 11.641 -9.775 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.005 3.995 3 C -0.215 4.215 4 N -0.100 5.100 5 C -0.182 4.182 6 C -0.190 4.190 7 N -0.094 5.094 8 C -0.114 4.114 9 C 0.394 3.606 10 O -0.463 6.463 11 N -0.292 5.292 12 C 0.105 3.895 13 C -0.545 4.545 14 H 0.069 0.931 15 C -0.130 4.130 16 N -0.527 5.527 17 Si 0.715 3.285 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.211 1.211 21 C 0.036 3.964 22 C -0.149 4.149 23 C -0.084 4.084 24 C -0.202 4.202 25 C -0.067 4.067 26 N -0.197 5.197 27 C -0.039 4.039 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.187 0.813 36 H 0.185 0.815 37 H 0.045 0.955 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.167 0.833 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.945 10.811 -9.702 14.556 hybrid contribution -2.161 0.392 0.170 2.203 sum -3.107 11.202 -9.532 15.033 Atomic orbital electron populations 1.22113 0.93713 1.03106 1.02525 1.21910 0.95245 0.93971 0.88407 1.22126 1.02089 0.94638 1.02631 1.45356 1.36642 1.21515 1.06528 1.22594 1.07622 1.04300 0.83733 1.22581 1.01736 0.94557 1.00130 1.71012 1.18018 1.21878 0.98447 1.22689 1.02511 0.91665 0.94506 1.16488 0.78919 0.80040 0.85104 1.90578 1.61810 1.68939 1.24992 1.48077 1.40968 1.30382 1.09737 1.20136 0.95691 0.98042 0.75663 1.21191 1.07657 1.24962 1.00677 0.93128 1.24720 0.95336 0.96560 0.96342 1.69932 1.28896 1.43832 1.10065 0.86639 0.82118 0.80900 0.78834 1.20186 1.21260 1.21142 1.20228 0.90503 0.96170 0.89502 1.21407 0.97433 0.98224 0.97878 1.21636 0.98469 0.93380 0.94886 1.22089 0.93780 1.01793 1.02545 1.22705 0.97978 0.93065 0.92908 1.67713 1.30272 1.08583 1.13121 1.22835 0.87063 0.97959 0.96024 0.92215 0.90836 0.91739 0.84959 0.91950 0.90807 0.92154 0.81338 0.81485 0.95500 0.89653 0.93157 0.88615 0.89509 0.84571 0.85294 0.83284 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.24 37.15 0.34 -1.39 16 2 C 0.11 1.44 3.50 -67.93 -0.24 1.20 16 3 C -0.16 -1.66 9.25 37.16 0.34 -1.32 16 4 N -0.42 -7.00 2.62 -107.51 -0.28 -7.29 16 5 C -0.05 -0.69 10.53 -16.94 -0.18 -0.87 16 6 C -0.04 -0.67 11.85 -17.96 -0.21 -0.88 16 7 N -0.37 -8.39 6.99 -11.26 -0.08 -8.47 16 8 C 0.14 3.02 7.49 -154.52 -1.16 1.86 16 9 C 0.61 12.84 7.60 -12.53 -0.10 12.75 16 10 O -0.58 -11.79 13.80 5.27 0.07 -11.72 16 11 N -0.56 -11.93 2.46 -177.71 -0.44 -12.36 16 12 C 0.22 5.48 4.76 -5.19 -0.02 5.45 16 13 C -0.51 -13.56 8.45 -34.44 -0.29 -13.85 16 14 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 15 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 16 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.16 2.81 5.56 -5.19 -0.03 2.78 16 22 C -0.15 -2.39 5.48 -104.48 -0.57 -2.96 16 23 C -0.06 -0.85 9.86 -39.28 -0.39 -1.23 16 24 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 25 C 0.09 1.24 11.18 -17.54 -0.20 1.04 16 26 N -0.49 -8.01 10.36 -13.26 -0.14 -8.15 16 27 C 0.12 1.97 10.86 -17.55 -0.19 1.78 16 28 H 0.06 0.59 7.95 -51.92 -0.41 0.18 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.13 2.05 5.37 -51.93 -0.28 1.77 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.57 7.95 -51.93 -0.41 0.16 16 35 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 37 H 0.03 0.68 8.02 -51.93 -0.42 0.27 16 38 H 0.09 2.28 5.29 -51.93 -0.27 2.01 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.10 1.62 8.02 -51.93 -0.42 1.20 16 41 H 0.09 1.46 7.32 -51.93 -0.38 1.08 16 42 H 0.14 1.97 7.92 -52.48 -0.42 1.55 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 45 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -32.01 378.40 -9.18 -41.19 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.36 Total: 5.60 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -3.38 Total: 3.50 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.20 Total: -60.81 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.01 -9.18 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199410357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.174 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds