Wall clock time and date at job start Tue Mar 31 2020 15:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 N 1.46504 * 109.47400 * 119.99657 * 2 1 3 5 5 C 1.35393 * 126.43952 * 300.03037 * 4 2 1 6 6 C 1.35565 * 107.16114 * 180.20551 * 5 4 2 7 7 N 1.33096 * 108.34797 * 359.59596 * 6 5 4 8 8 C 1.31616 * 109.09805 * 0.40870 * 7 6 5 9 9 C 1.47400 * 125.86898 * 179.72685 * 8 7 6 10 10 O 1.21609 * 120.00270 * 174.34522 * 9 8 7 11 11 N 1.34781 * 119.99924 * 354.34460 * 9 8 7 12 12 C 1.46499 * 120.00006 * 4.30641 * 11 9 8 13 13 C 1.50702 * 109.46782 * 83.54263 * 12 11 9 14 14 H 1.08002 * 120.00324 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99601 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00309 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99848 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47254 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47170 * 120.00030 * 17 15 13 20 20 H 1.48502 * 109.47147 * 240.00169 * 17 15 13 21 21 C 1.46504 * 120.00165 * 184.30775 * 11 9 8 22 22 C 1.50702 * 109.46993 * 90.00031 * 21 11 9 23 23 C 1.38675 * 120.41601 * 269.72248 * 22 21 11 24 24 C 1.38630 * 118.41804 * 179.78444 * 23 22 21 25 25 C 1.38230 * 119.16037 * 0.51362 * 24 23 22 26 26 N 1.31854 * 120.76067 * 359.72033 * 25 24 23 27 27 C 1.31882 * 121.72957 * 0.02562 * 26 25 24 28 28 H 1.09009 * 109.47203 * 300.00089 * 1 2 3 29 29 H 1.08998 * 109.47507 * 59.99704 * 1 2 3 30 30 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47138 * 240.00244 * 2 1 3 32 32 H 1.08998 * 109.47267 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47144 * 299.99607 * 3 2 1 34 34 H 1.08993 * 109.47540 * 60.00017 * 3 2 1 35 35 H 1.07997 * 126.42211 * 359.92922 * 5 4 2 36 36 H 1.08000 * 125.82540 * 179.72670 * 6 5 4 37 37 H 1.08998 * 109.47480 * 203.54029 * 12 11 9 38 38 H 1.09002 * 109.46976 * 323.54694 * 12 11 9 39 39 H 0.96994 * 119.99933 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.47316 * 209.99957 * 21 11 9 41 41 H 1.09000 * 109.46863 * 329.99967 * 21 11 9 42 42 H 1.08004 * 120.79108 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.41967 * 180.21652 * 24 23 22 44 44 H 1.07994 * 119.61755 * 179.75116 * 25 24 23 45 45 H 1.07996 * 119.61663 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7725 -0.3438 2.4817 6 6 2.4141 -1.2425 3.2681 7 7 3.0298 -2.1227 2.4822 8 6 2.8070 -1.8064 1.2242 9 6 3.3201 -2.5309 0.0476 10 8 2.9643 -2.2066 -1.0691 11 7 4.1838 -3.5530 0.2094 12 6 4.5395 -4.0051 1.5567 13 6 3.4891 -4.9619 2.0591 14 1 2.6412 -5.2082 1.4371 15 6 3.6107 -5.5228 3.3127 16 7 4.6429 -5.2225 4.0703 17 14 2.3090 -6.7093 3.9352 18 1 1.2587 -6.8799 2.8994 19 1 2.9357 -8.0240 4.2252 20 1 1.6982 -6.1677 5.1757 21 6 4.7669 -4.2117 -0.9621 22 6 6.0502 -3.5186 -1.3414 23 6 6.0387 -2.4628 -2.2403 24 6 7.2425 -1.8522 -2.5563 25 6 8.4073 -2.3198 -1.9772 26 7 8.3809 -3.3297 -1.1299 27 6 7.2538 -3.9310 -0.8024 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.1804 0.4946 2.8177 36 1 2.4223 -1.2451 4.3481 37 1 5.5057 -4.5088 1.5277 38 1 4.5976 -3.1458 2.2248 39 1 4.7282 -5.6168 4.9523 40 1 4.9737 -5.2557 -0.7265 41 1 4.0657 -4.1593 -1.7950 42 1 5.1134 -2.1217 -2.6808 43 1 7.2705 -1.0248 -3.2499 44 1 9.3497 -1.8522 -2.2212 45 1 7.2717 -4.7554 -0.1050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199410357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:58 Heat of formation + Delta-G solvation = 61.683782 kcal Electronic energy + Delta-G solvation = -28758.890823 eV Core-core repulsion = 24970.598091 eV Total energy + Delta-G solvation = -3788.292732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.16705 -41.27650 -40.11080 -37.39585 -36.49267 -34.71462 -33.56977 -32.64245 -31.70746 -30.65548 -29.22197 -28.22691 -27.52035 -25.17846 -24.50662 -24.07965 -23.47205 -22.68198 -21.40762 -19.96132 -18.62634 -18.17350 -17.87462 -17.51933 -17.07228 -16.83103 -16.76392 -16.20197 -16.14259 -15.57041 -15.30377 -14.95007 -14.76652 -14.60711 -14.39648 -14.30144 -14.06523 -13.95800 -13.83388 -13.41378 -13.25380 -13.15019 -13.13658 -12.75306 -12.71428 -12.48708 -12.41084 -12.16320 -12.06717 -11.63671 -10.99498 -10.76145 -10.65660 -10.54196 -10.45832 -10.17583 -9.95279 -9.58837 -9.25827 -8.02231 -6.08633 0.10239 0.32475 0.54215 1.39963 1.42209 1.51430 1.61873 1.80069 2.38901 2.51871 2.62645 2.94503 3.31237 3.48880 3.53693 3.67043 3.86793 3.87081 3.94758 3.97244 4.08209 4.09463 4.21963 4.43314 4.49447 4.53552 4.63812 4.65177 4.71971 4.72585 4.77601 4.84468 4.89284 4.98200 5.07311 5.17642 5.19994 5.33140 5.38046 5.54596 5.70923 5.77244 5.88277 6.03222 6.19923 6.28440 6.45776 6.90796 7.00816 7.07312 7.35173 7.55811 9.05935 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007568 B = 0.006447 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.018226 B = 4342.135072 C = 7117.033884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.098 3.902 3 C -0.148 4.148 4 N -0.410 5.410 5 C -0.005 4.005 6 C -0.072 4.072 7 N -0.421 5.421 8 C 0.102 3.898 9 C 0.601 3.399 10 O -0.579 6.579 11 N -0.572 5.572 12 C 0.245 3.755 13 C -0.505 4.505 14 H 0.034 0.966 15 C 0.030 3.970 16 N -0.916 5.916 17 Si 0.943 3.057 18 H -0.279 1.279 19 H -0.278 1.278 20 H -0.283 1.283 21 C 0.161 3.839 22 C -0.157 4.157 23 C -0.063 4.063 24 C -0.168 4.168 25 C 0.089 3.911 26 N -0.511 5.511 27 C 0.101 3.899 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.039 0.961 31 H 0.108 0.892 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.222 0.778 36 H 0.178 0.822 37 H 0.009 0.991 38 H 0.067 0.933 39 H 0.260 0.740 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.169 0.831 44 H 0.187 0.813 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 14.322 -10.791 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.003 4.003 3 C -0.206 4.206 4 N -0.091 5.091 5 C -0.145 4.145 6 C -0.225 4.225 7 N -0.142 5.142 8 C -0.155 4.155 9 C 0.389 3.611 10 O -0.462 6.462 11 N -0.299 5.299 12 C 0.125 3.875 13 C -0.544 4.544 14 H 0.053 0.947 15 C -0.169 4.169 16 N -0.557 5.557 17 Si 0.770 3.230 18 H -0.204 1.204 19 H -0.204 1.204 20 H -0.209 1.209 21 C 0.038 3.962 22 C -0.160 4.160 23 C -0.090 4.090 24 C -0.187 4.187 25 C -0.068 4.068 26 N -0.220 5.220 27 C -0.055 4.055 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.238 0.762 36 H 0.196 0.804 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.157 0.843 43 H 0.187 0.813 44 H 0.204 0.796 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.163 13.485 -10.770 17.393 hybrid contribution -1.797 -0.300 0.423 1.871 sum -3.960 13.185 -10.348 17.222 Atomic orbital electron populations 1.22098 0.91481 1.02236 1.04915 1.22181 0.96921 0.95034 0.86168 1.22096 1.00915 0.92618 1.04954 1.45655 1.35112 1.20248 1.08119 1.23264 1.05086 1.03700 0.82420 1.22959 1.03155 0.95448 1.00969 1.70823 1.19546 1.24020 0.99780 1.22553 1.05150 0.93880 0.93934 1.16678 0.78753 0.79976 0.85651 1.90557 1.61783 1.68967 1.24912 1.47992 1.41627 1.30987 1.09336 1.19606 0.94103 0.96561 0.77238 1.21270 1.07361 1.25151 1.00609 0.94741 1.25342 0.97001 0.98010 0.96537 1.70032 1.30331 1.44939 1.10353 0.85754 0.79857 0.79325 0.78051 1.20389 1.20387 1.20873 1.20292 0.91363 0.96098 0.88468 1.21235 0.96382 0.99300 0.99115 1.21775 0.99663 0.92994 0.94560 1.22478 0.92397 1.01854 1.02010 1.23373 0.99906 0.91937 0.91549 1.67712 1.30045 1.09882 1.14392 1.22709 0.87673 0.98468 0.96660 0.90246 0.88039 0.94195 0.87459 0.93751 0.88055 0.90252 0.76158 0.80450 0.97320 0.91529 0.93089 0.88948 0.88926 0.84278 0.81338 0.79641 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.24 71.98 0.67 -2.19 16 2 C 0.10 2.44 3.50 44.99 0.16 2.60 16 3 C -0.15 -2.63 9.25 71.98 0.67 -1.97 16 4 N -0.41 -13.29 2.62 -494.05 -1.29 -14.58 16 5 C -0.01 -0.15 10.53 83.52 0.88 0.73 16 6 C -0.07 -2.64 11.85 83.88 0.99 -1.65 16 7 N -0.42 -19.53 6.99 -189.53 -1.33 -20.85 16 8 C 0.10 4.36 7.49 136.27 1.02 5.38 16 9 C 0.60 26.37 7.60 86.66 0.66 27.03 16 10 O -0.58 -24.04 13.80 -4.06 -0.06 -24.10 16 11 N -0.57 -25.48 2.46 -834.40 -2.05 -27.53 16 12 C 0.25 12.75 4.76 85.63 0.41 13.15 16 13 C -0.50 -28.24 8.45 25.60 0.22 -28.03 16 14 H 0.03 2.00 7.81 -2.91 -0.02 1.97 16 15 C 0.03 1.71 5.46 84.65 0.46 2.17 16 16 N -0.92 -53.80 13.29 21.45 0.28 -53.51 16 17 Si 0.94 45.18 29.54 68.60 2.03 47.20 16 18 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 C 0.16 5.98 5.56 85.63 0.48 6.45 16 22 C -0.16 -5.32 5.48 -19.77 -0.11 -5.43 16 23 C -0.06 -1.84 9.86 22.47 0.22 -1.62 16 24 C -0.17 -3.93 10.11 22.36 0.23 -3.71 16 25 C 0.09 2.27 11.18 84.69 0.95 3.21 16 26 N -0.51 -16.81 10.36 -195.85 -2.03 -18.84 16 27 C 0.10 3.55 10.86 84.67 0.92 4.47 16 28 H 0.08 1.21 7.95 -2.38 -0.02 1.19 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 3.25 5.37 -2.39 -0.01 3.24 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.08 1.13 7.95 -2.39 -0.02 1.11 16 35 H 0.22 3.75 8.06 -2.91 -0.02 3.72 16 36 H 0.18 5.83 8.06 -2.91 -0.02 5.81 16 37 H 0.01 0.48 8.02 -2.39 -0.02 0.46 16 38 H 0.07 3.79 5.29 -2.39 -0.01 3.77 16 39 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 40 H 0.09 3.39 8.02 -2.39 -0.02 3.37 16 41 H 0.09 3.26 7.32 -2.39 -0.02 3.24 16 42 H 0.14 3.93 7.92 -2.91 -0.02 3.90 16 43 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 44 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 45 H 0.15 5.27 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -73.34 378.40 5.36 -67.99 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.99 Total: 23.62 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 8.81 Total: 20.60 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -6.41 Total: -135.31 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.06 Total: -24.10 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.34 5.36 -67.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199410357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.672 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds