Wall clock time and date at job start Tue Mar 31 2020 15:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 N 1.46897 * 109.47267 * 174.87142 * 3 2 1 5 5 C 1.46902 * 111.00521 * 199.71923 * 4 3 2 6 6 C 1.50705 * 109.46411 * 66.04680 * 5 4 3 7 7 H 1.08001 * 120.00547 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99569 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99841 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00107 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46982 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47456 * 119.99764 * 10 8 6 13 13 H 1.48507 * 109.46961 * 239.99824 * 10 8 6 14 14 C 1.46902 * 110.99904 * 75.76588 * 4 3 2 15 15 C 1.50700 * 109.47268 * 199.75129 * 14 4 3 16 16 C 1.38317 * 120.35738 * 264.16881 * 15 14 4 17 17 N 1.31891 * 121.02457 * 179.70050 * 16 15 14 18 18 C 1.31742 * 121.85448 * 0.58333 * 17 16 15 19 19 C 1.39304 * 120.59601 * 359.71086 * 18 17 16 20 20 C 1.48384 * 120.53440 * 179.97438 * 19 18 17 21 21 C 1.39353 * 120.09370 * 179.74016 * 20 19 18 22 22 C 1.37970 * 119.90593 * 179.76549 * 21 20 19 23 23 C 1.38554 * 120.09515 * 0.51253 * 22 21 20 24 24 F 1.35096 * 119.90951 * 179.76349 * 23 22 21 25 25 C 1.38556 * 120.19007 * 359.73929 * 23 22 21 26 26 C 1.37979 * 120.09461 * 0.02562 * 25 23 22 27 27 C 1.38415 * 120.35786 * 84.44582 * 15 14 4 28 28 H 1.09000 * 109.47129 * 300.00021 * 1 2 3 29 29 H 1.09002 * 109.47002 * 60.00084 * 1 2 3 30 30 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46908 * 239.99237 * 2 1 3 32 32 H 1.09004 * 109.46826 * 120.00433 * 2 1 3 33 33 H 1.08995 * 109.46981 * 54.87479 * 3 2 1 34 34 H 1.08999 * 109.47328 * 294.87456 * 3 2 1 35 35 H 1.08993 * 109.47606 * 186.04351 * 5 4 3 36 36 H 1.08996 * 109.46688 * 306.04969 * 5 4 3 37 37 H 0.96992 * 119.99676 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.47074 * 79.74929 * 14 4 3 39 39 H 1.08995 * 109.47113 * 319.74914 * 14 4 3 40 40 H 1.07996 * 119.48459 * 359.97438 * 16 15 14 41 41 H 1.07998 * 119.70241 * 179.67873 * 18 17 16 42 42 H 1.08005 * 120.04430 * 0.02562 * 21 20 19 43 43 H 1.08000 * 119.95638 * 180.23571 * 22 21 20 44 44 H 1.07994 * 119.95328 * 179.97438 * 25 23 22 45 45 H 1.08000 * 120.04848 * 180.02562 * 26 25 23 46 46 H 1.07992 * 120.84435 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5038 1.4443 0.1238 5 6 3.9911 2.7491 0.5906 6 6 3.5119 2.9896 1.9990 7 1 2.9063 2.2473 2.4976 8 6 3.8466 4.1575 2.6511 9 7 4.5845 5.0613 2.0440 10 14 3.2532 4.4555 4.3970 11 1 2.4462 3.2942 4.8505 12 1 4.4234 4.6266 5.2952 13 1 2.4178 5.6827 4.4333 14 6 4.1399 1.0683 -1.1458 15 6 5.5519 0.6112 -0.8842 16 6 6.6085 1.4937 -1.0181 17 7 7.8488 1.1093 -0.7868 18 6 8.1391 -0.1256 -0.4313 19 6 7.1315 -1.0756 -0.2808 20 6 7.4601 -2.4662 0.1190 21 6 6.4443 -3.4078 0.2722 22 6 6.7547 -4.7010 0.6393 23 6 8.0732 -5.0614 0.8661 24 9 8.3724 -6.3275 1.2301 25 6 9.0859 -4.1271 0.7201 26 6 8.7848 -2.8328 0.3484 27 6 5.8060 -0.6978 -0.5129 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6037 1.9821 0.8405 34 1 1.7536 1.9291 -0.9323 35 1 5.0808 2.7582 0.5711 36 1 3.6094 3.5341 -0.0622 37 1 4.8202 5.8827 2.5029 38 1 4.1547 1.9294 -1.8138 39 1 3.5760 0.2587 -1.6090 40 1 6.4144 2.5145 -1.3123 41 1 9.1677 -0.4040 -0.2556 42 1 5.4159 -3.1267 0.0996 43 1 5.9684 -5.4324 0.7546 44 1 10.1122 -4.4120 0.8982 45 1 9.5748 -2.1053 0.2344 46 1 5.0006 -1.4092 -0.4057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237003908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:20 Heat of formation + Delta-G solvation = 6.643695 kcal Electronic energy + Delta-G solvation = -26960.011450 eV Core-core repulsion = 23149.412039 eV Total energy + Delta-G solvation = -3810.599411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.07946 -40.35927 -38.79509 -37.14257 -33.38410 -33.18641 -32.86959 -31.63644 -31.14128 -28.85647 -27.49175 -26.25298 -24.29703 -24.14392 -23.26792 -22.06891 -21.35400 -20.91121 -19.76518 -18.10872 -16.79337 -16.75796 -16.52778 -16.23812 -15.77541 -15.54420 -15.07009 -14.76367 -14.55987 -14.35873 -13.97132 -13.76345 -13.60193 -13.51186 -13.32132 -12.90212 -12.79401 -12.50830 -12.40148 -12.21059 -11.96282 -11.77894 -11.54162 -11.33985 -11.12032 -11.01952 -10.85955 -10.70256 -10.38094 -10.08569 -10.00227 -9.86092 -9.36102 -9.25238 -9.17499 -8.98832 -8.46542 -8.05774 -7.34733 -6.05280 -4.06158 0.45685 1.01943 1.48976 1.74974 3.29031 3.36982 3.39972 3.41233 4.03643 4.09353 4.36707 4.41355 4.46132 4.63260 4.73156 4.87068 4.97970 5.00691 5.07138 5.17607 5.29752 5.33671 5.37507 5.40728 5.50764 5.61363 5.71102 5.76239 5.82372 5.88827 5.93772 5.95023 6.01796 6.05021 6.12482 6.19077 6.20605 6.38593 6.45125 6.54189 6.63613 6.66345 6.77057 6.91447 7.23736 7.28304 7.76497 8.03478 8.13584 8.21405 8.48529 9.01117 9.57978 11.05567 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.003134 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.137543 B = 8931.150318 C = 9542.861483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.061 3.939 4 N -0.532 5.532 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.091 3.909 15 C -0.103 4.103 16 C 0.119 3.881 17 N -0.481 5.481 18 C 0.102 3.898 19 C -0.112 4.112 20 C -0.036 4.036 21 C -0.083 4.083 22 C -0.148 4.148 23 C 0.090 3.910 24 F -0.142 7.142 25 C -0.149 4.149 26 C -0.086 4.086 27 C -0.045 4.045 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.019 0.981 35 H 0.034 0.966 36 H -0.009 1.009 37 H 0.261 0.739 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -16.960 -7.255 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.067 4.067 4 N -0.256 5.256 5 C 0.066 3.934 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.037 4.037 15 C -0.105 4.105 16 C -0.038 4.038 17 N -0.188 5.188 18 C -0.056 4.056 19 C -0.114 4.114 20 C -0.037 4.037 21 C -0.101 4.101 22 C -0.167 4.167 23 C 0.071 3.929 24 F -0.121 7.121 25 C -0.168 4.168 26 C -0.103 4.103 27 C -0.071 4.071 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.009 0.991 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.173 0.827 41 H 0.169 0.831 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.126 -16.543 -6.951 18.412 hybrid contribution -1.069 0.115 0.680 1.272 sum 3.057 -16.428 -6.272 17.848 Atomic orbital electron populations 1.21731 0.96483 1.00820 1.01678 1.21548 0.94589 0.97928 1.01590 1.22055 0.88636 0.95412 1.00607 1.62139 1.04571 1.34653 1.24273 1.19803 0.96181 0.82194 0.95251 1.21161 1.32307 1.02566 0.98523 0.91860 1.24972 0.95303 0.96074 0.98153 1.69958 1.37457 1.08738 1.37384 0.86493 0.78541 0.78057 0.84658 1.19673 1.21024 1.21101 1.20968 0.90461 0.99431 0.92876 1.20788 0.97106 0.93783 0.98852 1.22825 0.87194 0.99581 0.94159 1.67658 1.22358 1.17227 1.11586 1.22746 0.98859 0.88303 0.95695 1.19604 0.94667 0.93339 1.03770 1.18734 0.93238 0.92326 0.99383 1.21140 0.99779 0.91645 0.97492 1.21077 0.94959 0.97749 1.02905 1.17794 0.93954 0.79535 1.01612 1.91491 1.94073 1.37273 1.89264 1.21058 0.99243 0.93269 1.03196 1.21095 0.96043 0.95449 0.97757 1.21409 0.95238 0.95944 0.94497 0.92608 0.93258 0.93327 0.93203 0.91440 0.89359 0.96235 0.94810 0.99143 0.92964 0.94229 0.90913 0.82737 0.83144 0.84496 0.84565 0.84575 0.84537 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.69 5.98 -26.73 -0.16 -1.85 16 3 C 0.06 1.09 4.79 -3.83 -0.02 1.07 16 4 N -0.53 -10.56 4.34 -237.53 -1.03 -11.60 16 5 C 0.19 4.72 4.55 -4.97 -0.02 4.70 16 6 C -0.51 -13.85 8.23 -34.44 -0.28 -14.13 16 7 H 0.06 1.72 7.31 -52.49 -0.38 1.34 16 8 C 0.06 1.58 5.46 -17.81 -0.10 1.48 16 9 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 10 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.09 1.49 4.97 -4.97 -0.02 1.47 16 15 C -0.10 -1.67 5.03 -104.53 -0.53 -2.19 16 16 C 0.12 2.06 9.59 -17.50 -0.17 1.89 16 17 N -0.48 -8.18 10.35 -12.97 -0.13 -8.31 16 18 C 0.10 1.46 10.60 -17.19 -0.18 1.28 16 19 C -0.11 -1.52 5.89 -104.75 -0.62 -2.13 16 20 C -0.04 -0.41 5.88 -104.89 -0.62 -1.03 16 21 C -0.08 -0.87 9.44 -39.26 -0.37 -1.24 16 22 C -0.15 -1.46 10.01 -39.56 -0.40 -1.86 16 23 C 0.09 0.94 7.30 -39.35 -0.29 0.66 16 24 F -0.14 -1.57 17.26 2.25 0.04 -1.53 16 25 C -0.15 -1.42 10.01 -39.56 -0.40 -1.82 16 26 C -0.09 -0.85 9.44 -39.26 -0.37 -1.22 16 27 C -0.04 -0.64 9.23 -38.95 -0.36 -1.00 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.64 6.89 -51.93 -0.36 0.28 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.79 6.58 -51.93 -0.34 1.45 16 34 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 35 H 0.03 0.90 6.37 -51.93 -0.33 0.57 16 36 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.04 0.65 7.91 -51.93 -0.41 0.24 16 39 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 40 H 0.16 2.66 8.00 -52.49 -0.42 2.24 16 41 H 0.15 1.68 6.23 -52.49 -0.33 1.35 16 42 H 0.14 1.26 6.27 -52.48 -0.33 0.93 16 43 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.14 1.10 6.23 -52.49 -0.33 0.77 16 46 H 0.13 1.64 6.32 -52.49 -0.33 1.31 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -30.63 380.18 -10.62 -41.25 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.41 Total: 0.88 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -4.53 Total: -17.40 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.43 Total: -45.41 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.63 -10.62 -41.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237003908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.893 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds