Wall clock time and date at job start Tue Mar 31 2020 15:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46977 * 2 1 4 4 N 1.46505 * 109.46970 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99881 * 270.00100 * 4 3 2 6 6 H 1.07997 * 120.00217 * 41.13629 * 5 4 3 7 7 C 1.38816 * 119.99756 * 221.14097 * 5 4 3 8 8 N 1.31623 * 119.99757 * 19.36674 * 7 5 4 9 9 Si 1.86800 * 119.99750 * 199.36784 * 7 5 4 10 10 H 1.48494 * 109.47270 * 60.00160 * 9 7 5 11 11 H 1.48500 * 109.46696 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46805 * 299.99834 * 9 7 5 13 13 C 1.46500 * 119.99984 * 89.99843 * 4 3 2 14 14 C 1.52994 * 109.47398 * 272.25267 * 13 4 3 15 15 N 1.46500 * 109.47398 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99802 * 179.97438 * 15 14 13 17 17 O 1.21533 * 120.00242 * 0.02562 * 16 15 14 18 18 C 1.47907 * 119.99486 * 179.97438 * 16 15 14 19 19 N 1.32373 * 120.64032 * 355.00703 * 18 16 15 20 20 N 1.28090 * 123.18730 * 180.02562 * 19 18 16 21 21 C 1.31806 * 123.49052 * 359.43196 * 20 19 18 22 22 C 1.40401 * 119.13586 * 0.83871 * 21 20 19 23 23 C 1.40236 * 122.73692 * 179.13408 * 22 21 20 24 24 C 1.36256 * 119.36727 * 180.02562 * 23 22 21 25 25 C 1.39375 * 121.07463 * 0.02562 * 24 23 22 26 26 C 1.36360 * 121.08930 * 0.02562 * 25 24 23 27 27 C 1.39823 * 119.42004 * 0.25519 * 26 25 24 28 28 H 1.08997 * 109.46486 * 60.00510 * 1 2 3 29 29 H 1.09004 * 109.46589 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47336 * 299.99930 * 1 2 3 31 31 H 1.08997 * 109.47103 * 239.99635 * 2 1 3 32 32 H 1.09006 * 109.46687 * 120.00059 * 2 1 3 33 33 H 1.09005 * 109.47283 * 60.00051 * 3 2 1 34 34 H 1.08996 * 109.47035 * 299.99900 * 3 2 1 35 35 H 0.97000 * 119.99388 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.46993 * 152.24894 * 13 4 3 37 37 H 1.09003 * 109.46697 * 32.25255 * 13 4 3 38 38 H 1.09004 * 109.46848 * 59.99498 * 14 13 4 39 39 H 1.09001 * 109.46875 * 300.00393 * 14 13 4 40 40 H 0.97003 * 119.99722 * 0.02562 * 15 14 13 41 41 H 1.08009 * 120.42687 * 180.02562 * 21 20 19 42 42 H 1.08006 * 120.31347 * 0.05128 * 23 22 21 43 43 H 1.07997 * 119.46221 * 180.02562 * 24 23 22 44 44 H 1.08008 * 119.45377 * 179.97438 * 25 24 23 45 45 H 1.08007 * 120.28773 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.4426 1.1869 6 1 3.8489 0.8275 2.0067 7 6 5.3203 2.2336 1.3356 8 7 5.5264 3.2469 0.5212 9 14 6.5496 1.8599 2.6916 10 1 7.0918 0.4902 2.5044 11 1 7.6602 2.8441 2.6377 12 1 5.8735 1.9487 4.0108 13 6 4.2381 1.4423 -1.2678 14 6 4.4442 0.0009 -1.7375 15 7 5.1767 0.0007 -3.0063 16 6 5.4745 -1.1658 -3.6122 17 8 5.1350 -2.2174 -3.1064 18 6 6.2135 -1.1659 -4.8934 19 7 6.5026 -0.0284 -5.5056 20 7 7.1392 0.0284 -6.6157 21 6 7.5805 -1.0357 -7.2562 22 6 7.3349 -2.3087 -6.7174 23 6 7.7541 -3.4912 -7.3439 24 6 7.4781 -4.6909 -6.7599 25 6 6.7865 -4.7608 -5.5519 26 6 6.3635 -3.6310 -4.9163 27 6 6.6237 -2.3823 -5.4892 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 6.3166 3.7998 0.6254 36 1 5.2073 1.9208 -1.1274 37 1 3.6673 1.9906 -2.0173 38 1 3.4749 -0.4776 -1.8779 39 1 5.0148 -0.5474 -0.9879 40 1 5.4480 0.8400 -3.4098 41 1 8.1127 -0.9303 -8.1902 42 1 8.2909 -3.4513 -8.2803 43 1 7.8006 -5.6025 -7.2409 44 1 6.5815 -5.7259 -5.1123 45 1 5.8282 -3.7002 -3.9808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753145860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:14 Heat of formation + Delta-G solvation = 56.708238 kcal Electronic energy + Delta-G solvation = -27193.804533 eV Core-core repulsion = 23405.296045 eV Total energy + Delta-G solvation = -3788.508488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67807 -39.22692 -38.27787 -36.51681 -34.40303 -33.59320 -32.87507 -32.04778 -31.01772 -30.52997 -28.30116 -25.83911 -25.54685 -24.51890 -23.69087 -22.80215 -21.15171 -20.80201 -20.11121 -18.69915 -18.36731 -17.56284 -16.63126 -16.31976 -15.74388 -15.54724 -15.03932 -14.89275 -14.65282 -14.55459 -14.27243 -14.14737 -13.86066 -13.43210 -12.96079 -12.86180 -12.77409 -12.66845 -12.59710 -11.86236 -11.61722 -11.57003 -11.50487 -11.19237 -10.94087 -10.80596 -10.74236 -10.46553 -10.35319 -10.12222 -9.93837 -9.87730 -9.76258 -9.66871 -9.55004 -8.83619 -8.59576 -8.45668 -6.57612 -5.83679 -3.46718 -0.27171 0.32786 1.33678 2.46076 3.03158 3.13151 3.36309 3.41890 3.44604 3.74306 3.78194 4.08674 4.22632 4.35347 4.42454 4.47334 4.72952 4.84993 4.92213 5.20447 5.28601 5.34767 5.45228 5.49060 5.63893 5.66325 5.76398 5.89245 5.98861 6.05570 6.07692 6.10295 6.18823 6.30809 6.39016 6.42139 6.53164 6.62220 6.67860 6.78512 6.97409 6.99115 7.18896 7.49633 7.74036 7.80585 8.30833 8.51079 8.51978 9.15171 9.75198 10.35969 11.16849 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012705 B = 0.003019 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.303701 B = 9273.317928 C =10052.805151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.268 4.268 6 H 0.060 0.940 7 C 0.019 3.981 8 N -0.885 5.885 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.142 3.858 14 C 0.091 3.909 15 N -0.688 5.688 16 C 0.569 3.431 17 O -0.534 6.534 18 C 0.076 3.924 19 N -0.229 5.229 20 N -0.263 5.263 21 C 0.096 3.904 22 C -0.086 4.086 23 C -0.099 4.099 24 C -0.096 4.096 25 C -0.105 4.105 26 C -0.087 4.087 27 C -0.048 4.048 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.257 0.743 36 H 0.094 0.906 37 H 0.032 0.968 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.410 0.590 41 H 0.180 0.820 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -13.399 -16.501 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.297 5.297 5 C -0.398 4.398 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.526 5.526 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.206 1.206 13 C 0.014 3.986 14 C -0.034 4.034 15 N -0.338 5.338 16 C 0.351 3.649 17 O -0.412 6.412 18 C -0.082 4.082 19 N -0.066 5.066 20 N -0.094 5.094 21 C -0.078 4.078 22 C -0.094 4.094 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.106 4.106 27 C -0.056 4.056 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.246 0.754 41 H 0.197 0.803 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.364 -12.141 -16.028 20.245 hybrid contribution 1.086 -1.431 0.266 1.816 sum 3.450 -13.572 -15.762 21.084 Atomic orbital electron populations 1.21721 0.97343 1.00364 1.01041 1.22238 0.93867 1.01027 1.01504 1.20956 0.85090 0.92812 0.99058 1.43541 0.99394 1.85151 1.01636 1.18945 1.08640 1.20189 0.91998 0.92278 1.25303 1.00873 0.94354 0.97701 1.69998 1.27643 1.15381 1.39548 0.86477 0.81038 0.77812 0.82083 1.20742 1.21550 1.20555 1.20985 1.00347 0.90177 0.87077 1.22732 0.94999 1.03444 0.82177 1.46098 1.55209 1.08111 1.24351 1.17473 0.79744 0.84976 0.82679 1.90596 1.54569 1.30783 1.65252 1.23184 0.97353 0.90733 0.96899 1.72770 1.07065 1.23996 1.02749 1.72664 1.07025 1.27644 1.02113 1.24813 0.94757 0.88471 0.99751 1.18924 0.99321 0.95839 0.95272 1.20930 0.99914 0.90965 1.00086 1.21162 0.96826 0.98181 0.95356 1.21283 0.96813 0.99388 0.94950 1.22099 0.96834 0.90067 1.01618 1.18647 0.97647 0.94811 0.94489 0.93441 0.93847 0.93196 0.92889 0.92397 0.93231 0.94957 0.93352 0.88808 0.95000 0.92216 0.91197 0.75398 0.80296 0.84251 0.84996 0.84807 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.15 -2.65 6.23 -26.73 -0.17 -2.82 16 3 C 0.15 3.06 5.71 -4.04 -0.02 3.03 16 4 N -0.58 -13.91 2.40 -173.24 -0.42 -14.33 16 5 C -0.27 -7.14 9.43 -15.06 -0.14 -7.28 16 6 H 0.06 1.58 7.90 -52.49 -0.41 1.17 16 7 C 0.02 0.51 4.95 -17.43 -0.09 0.43 16 8 N -0.88 -24.83 11.64 55.49 0.65 -24.18 16 9 Si 0.90 21.34 29.60 -169.99 -5.03 16.31 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.14 3.16 5.42 -4.04 -0.02 3.14 16 14 C 0.09 1.82 5.97 -4.04 -0.02 1.80 16 15 N -0.69 -12.23 5.55 -61.23 -0.34 -12.57 16 16 C 0.57 9.94 7.79 -12.30 -0.10 9.84 16 17 O -0.53 -10.05 13.58 5.34 0.07 -9.98 16 18 C 0.08 1.19 6.90 -82.42 -0.57 0.62 16 19 N -0.23 -3.63 10.70 33.56 0.36 -3.27 16 20 N -0.26 -3.71 11.42 30.90 0.35 -3.35 16 21 C 0.10 1.00 11.20 -16.75 -0.19 0.81 16 22 C -0.09 -0.93 5.75 -106.85 -0.61 -1.54 16 23 C -0.10 -0.74 9.84 -39.54 -0.39 -1.13 16 24 C -0.10 -0.68 9.95 -39.87 -0.40 -1.08 16 25 C -0.10 -0.93 9.95 -39.84 -0.40 -1.33 16 26 C -0.09 -1.07 9.27 -39.67 -0.37 -1.44 16 27 C -0.05 -0.65 5.77 -106.57 -0.61 -1.27 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.97 6.12 -51.93 -0.32 0.66 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 1.06 8.04 -51.93 -0.42 0.65 16 34 H 0.03 0.64 7.91 -51.93 -0.41 0.23 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.09 2.36 5.74 -51.93 -0.30 2.07 16 37 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 38 H 0.06 1.19 6.13 -51.93 -0.32 0.87 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.41 6.89 7.86 -40.82 -0.32 6.57 16 41 H 0.18 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 43 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 45 H 0.18 2.45 5.12 -52.48 -0.27 2.18 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -31.07 374.24 -8.56 -39.63 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.12 Total: 6.11 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.73 Total: 0.00 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.60 Total: -57.71 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.07 -8.56 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753145860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.340 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds