Wall clock time and date at job start Tue Mar 31 2020 15:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47077 * 2 1 4 4 N 1.46497 * 109.47132 * 300.00012 * 3 2 1 5 5 C 1.36939 * 119.99952 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99631 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00233 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00121 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47089 * 60.00252 * 9 7 5 11 11 H 1.48498 * 109.46643 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46739 * 299.99840 * 9 7 5 13 13 N 1.46504 * 109.47000 * 240.00481 * 2 1 3 14 14 C 1.34770 * 120.00181 * 174.49627 * 13 2 1 15 15 O 1.21590 * 119.99867 * 5.00748 * 14 13 2 16 16 C 1.47600 * 120.00101 * 185.00776 * 14 13 2 17 17 C 1.38562 * 119.74345 * 359.72813 * 16 14 13 18 18 N 1.33767 * 122.06101 * 179.69754 * 17 16 14 19 19 H 0.97002 * 119.63512 * 180.26739 * 18 17 16 20 20 C 1.37231 * 120.73781 * 0.57995 * 18 17 16 21 21 N 1.31997 * 134.47272 * 179.71751 * 20 18 17 22 22 C 1.33420 * 110.92893 * 179.97438 * 21 20 18 23 23 C 1.35785 * 110.89074 * 0.02562 * 22 21 20 24 24 C 1.41374 * 106.45414 * 359.97438 * 23 22 21 25 25 C 1.38762 * 135.65357 * 179.97438 * 24 23 22 26 26 C 1.52994 * 109.47068 * 120.00485 * 2 1 3 27 27 C 1.52999 * 117.49723 * 122.32406 * 26 2 1 28 28 C 1.52995 * 117.50311 * 53.65829 * 26 2 1 29 29 H 1.08996 * 109.47537 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46850 * 299.99841 * 1 2 3 31 31 H 1.09004 * 109.47378 * 59.99219 * 1 2 3 32 32 H 1.08993 * 109.46812 * 60.00291 * 3 2 1 33 33 H 1.09000 * 109.46735 * 180.02562 * 3 2 1 34 34 H 0.96997 * 120.00090 * 0.02562 * 4 3 2 35 35 H 0.96993 * 120.00175 * 180.02562 * 8 7 5 36 36 H 0.97008 * 119.99542 * 354.21879 * 13 2 1 37 37 H 1.08007 * 118.96900 * 359.97438 * 17 16 14 38 38 H 1.07999 * 124.54927 * 179.97438 * 22 21 20 39 39 H 1.08000 * 126.77383 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.73151 * 0.02970 * 25 24 23 41 41 H 1.09007 * 115.54727 * 267.98651 * 26 2 1 42 42 H 1.08997 * 117.50360 * 359.97438 * 27 26 2 43 43 H 1.09001 * 117.49726 * 145.02076 * 27 26 2 44 44 H 1.08997 * 117.50486 * 214.97530 * 28 26 2 45 45 H 1.09001 * 117.49731 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5517 2.1332 -1.1961 5 6 1.8821 3.4443 -1.4126 6 1 2.5030 3.9692 -0.7016 7 6 1.4190 4.0989 -2.5456 8 7 0.6618 3.4595 -3.4118 9 14 1.8703 5.8874 -2.8412 10 1 3.3469 6.0170 -2.9304 11 1 1.2547 6.3498 -4.1109 12 1 1.3674 6.7170 -1.7169 13 7 2.0183 -0.6905 -1.1963 14 6 3.3382 -0.7176 -1.4671 15 8 4.1314 -0.2489 -0.6737 16 6 3.8210 -1.3163 -2.7269 17 6 2.9129 -1.8541 -3.6248 18 7 3.2986 -2.4025 -4.7823 19 1 2.6323 -2.7652 -5.3867 20 6 4.6270 -2.4635 -5.1213 21 7 5.2962 -2.9332 -6.1575 22 6 6.6080 -2.7446 -6.0029 23 6 6.8724 -2.1248 -4.8240 24 6 5.6243 -1.9104 -4.1955 25 6 5.1980 -1.3421 -3.0035 26 6 2.0400 -0.7213 1.2491 27 6 2.9596 -1.9266 1.0429 28 6 1.5173 -2.1351 1.5115 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 0.9937 1.6619 -1.8344 35 1 0.3385 3.9167 -4.2038 36 1 1.3919 -1.1317 -1.7913 37 1 1.8602 -1.8255 -3.3845 38 1 7.3586 -3.0453 -6.7188 39 1 7.8443 -1.8499 -4.4418 40 1 5.9093 -0.9281 -2.3041 41 1 2.2292 -0.0860 2.1145 42 1 3.2010 -2.2059 0.0174 43 1 3.7536 -2.0845 1.7729 44 1 1.3630 -2.4302 2.5493 45 1 0.8103 -2.5515 0.7939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753522873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:19 Heat of formation + Delta-G solvation = 107.320222 kcal Electronic energy + Delta-G solvation = -28446.072519 eV Core-core repulsion = 24659.758731 eV Total energy + Delta-G solvation = -3786.313788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56594 -40.37635 -38.24617 -37.15622 -35.03970 -33.83226 -33.46400 -31.64918 -29.94880 -29.07833 -28.82459 -26.09616 -24.20582 -24.03112 -23.55487 -22.13760 -21.59688 -21.32580 -20.30483 -19.21095 -17.94966 -17.42397 -17.30589 -16.57575 -16.46257 -15.95995 -15.40890 -15.25929 -14.73202 -14.44327 -14.27285 -13.80184 -13.68232 -13.39509 -13.12625 -12.91195 -12.48833 -12.41751 -12.20648 -12.13034 -11.95601 -11.80996 -11.39926 -11.13228 -10.91107 -10.85178 -10.78515 -10.66202 -10.26159 -10.13977 -9.96110 -9.70191 -9.50538 -9.43594 -8.82783 -8.71659 -8.18955 -7.79847 -6.87307 -5.77587 -3.03134 0.16116 0.97478 2.20279 2.98412 3.22721 3.44253 3.45053 3.49177 3.50649 3.71675 3.98380 4.00991 4.36475 4.47338 4.58782 4.81948 4.84476 5.03978 5.07823 5.12081 5.12688 5.35641 5.47734 5.59583 5.61907 5.66057 5.72750 5.82478 5.86485 5.92375 5.97000 6.00239 6.11514 6.20644 6.24631 6.30059 6.32406 6.46905 6.52450 6.56374 6.79683 6.85194 7.07589 7.09474 7.71004 7.73090 8.03878 8.42651 8.46778 9.54426 10.11336 10.46900 11.45777 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004747 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.092413 B = 5896.913088 C = 8093.844716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.202 3.798 3 C 0.140 3.860 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.938 5.938 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 N -0.714 5.714 14 C 0.584 3.416 15 O -0.515 6.515 16 C -0.223 4.223 17 C 0.182 3.818 18 N -0.487 5.487 19 H 0.426 0.574 20 C 0.243 3.757 21 N -0.533 5.533 22 C 0.049 3.951 23 C -0.222 4.222 24 C -0.171 4.171 25 C 0.087 3.913 26 C -0.143 4.143 27 C -0.157 4.157 28 C -0.186 4.186 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.389 0.611 37 H 0.179 0.821 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 -16.636 3.369 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.117 3.883 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.588 5.588 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.366 5.366 14 C 0.370 3.630 15 O -0.390 6.390 16 C -0.233 4.233 17 C 0.038 3.962 18 N -0.079 5.079 19 H 0.264 0.736 20 C -0.005 4.005 21 N -0.253 5.253 22 C -0.095 4.095 23 C -0.244 4.244 24 C -0.179 4.179 25 C 0.063 3.937 26 C -0.162 4.162 27 C -0.194 4.194 28 C -0.224 4.224 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.215 0.785 35 H 0.063 0.937 36 H 0.224 0.776 37 H 0.196 0.804 38 H 0.175 0.825 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.812 -16.586 3.030 16.958 hybrid contribution -0.211 1.051 -0.406 1.147 sum 1.601 -15.535 2.624 15.836 Atomic orbital electron populations 1.21997 0.93021 1.01349 1.04238 1.20087 0.93695 0.92578 0.81958 1.21112 0.98954 0.87638 0.91045 1.42223 1.61243 1.10468 1.23087 1.19183 1.24995 0.87606 1.04298 0.91387 1.24645 1.00722 0.98159 0.97455 1.69615 1.39814 1.36181 1.13195 0.86297 0.77922 0.85182 0.77021 1.21354 1.21802 1.21328 1.45888 1.06785 1.56746 1.27173 1.17291 0.82605 0.78624 0.84472 1.90789 1.54747 1.45692 1.47811 1.19512 0.93697 1.11452 0.98607 1.22279 1.00291 0.89930 0.83721 1.40210 1.06847 1.44193 1.16683 0.73583 1.20437 0.83085 1.01595 0.95432 1.69503 1.05519 1.26330 1.23928 1.22290 0.91216 0.99298 0.96647 1.21393 0.95956 1.09011 0.98035 1.20106 0.94705 1.07124 0.95985 1.21444 0.94207 0.85107 0.92926 1.22530 1.04095 0.90253 0.99364 1.22917 0.92494 1.01936 1.02093 1.22991 0.97804 1.00003 1.01554 0.92865 0.90846 0.90705 0.95872 0.93007 0.78545 0.93702 0.77639 0.80393 0.82464 0.84399 0.83193 0.87361 0.89039 0.89520 0.89390 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.18 37.16 0.30 -1.61 16 2 C 0.20 2.92 0.55 -131.82 -0.07 2.85 16 3 C 0.14 2.78 4.83 -4.04 -0.02 2.76 16 4 N -0.73 -17.30 5.18 -59.91 -0.31 -17.61 16 5 C -0.23 -6.33 9.99 -15.06 -0.15 -6.48 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.94 -27.33 13.06 55.49 0.72 -26.60 16 9 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.71 -9.21 4.13 -48.61 -0.20 -9.41 16 14 C 0.58 8.66 5.02 -12.44 -0.06 8.59 16 15 O -0.51 -9.31 12.28 5.29 0.06 -9.25 16 16 C -0.22 -2.88 5.86 -105.11 -0.62 -3.49 16 17 C 0.18 1.72 10.64 -16.59 -0.18 1.55 16 18 N -0.49 -4.79 5.27 -10.37 -0.05 -4.85 16 19 H 0.43 2.75 8.91 -40.82 -0.36 2.38 16 20 C 0.24 3.43 8.64 -153.90 -1.33 2.10 16 21 N -0.53 -8.25 11.17 -11.08 -0.12 -8.38 16 22 C 0.05 0.69 11.69 -17.74 -0.21 0.48 16 23 C -0.22 -3.10 10.99 -39.27 -0.43 -3.53 16 24 C -0.17 -2.51 6.41 -105.01 -0.67 -3.18 16 25 C 0.09 1.22 9.71 -38.54 -0.37 0.85 16 26 C -0.14 -1.86 4.81 -90.63 -0.44 -2.29 16 27 C -0.16 -1.94 8.28 -26.69 -0.22 -2.16 16 28 C -0.19 -1.94 9.68 -26.69 -0.26 -2.20 16 29 H 0.05 0.53 6.92 -51.93 -0.36 0.17 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.12 6.86 -51.93 -0.36 0.77 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 1.16 5.95 -51.93 -0.31 0.85 16 34 H 0.38 9.16 6.35 -40.82 -0.26 8.90 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.39 3.76 6.44 -40.82 -0.26 3.50 16 37 H 0.18 0.95 6.26 -52.48 -0.33 0.62 16 38 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.15 2.06 7.67 -52.48 -0.40 1.65 16 41 H 0.11 1.45 8.06 -51.92 -0.42 1.03 16 42 H 0.09 1.17 5.12 -51.93 -0.27 0.90 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.84 7.21 -51.93 -0.37 0.47 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -35.86 363.32 -10.05 -45.91 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -5.78 Total: 13.49 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -4.82 Total: -6.28 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: 0.04 Total: -66.84 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.06 Total: -9.25 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.86 -10.05 -45.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753522873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.230 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds