Wall clock time and date at job start Tue Mar 31 2020 15:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47077 * 2 1 4 4 N 1.46497 * 109.47132 * 300.00012 * 3 2 1 5 5 C 1.36939 * 119.99952 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99631 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00233 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00121 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47089 * 60.00252 * 9 7 5 11 11 H 1.48498 * 109.46643 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46739 * 299.99840 * 9 7 5 13 13 N 1.46504 * 109.47000 * 240.00481 * 2 1 3 14 14 C 1.34770 * 120.00181 * 174.49627 * 13 2 1 15 15 O 1.21590 * 119.99867 * 5.00748 * 14 13 2 16 16 C 1.47600 * 120.00101 * 185.00776 * 14 13 2 17 17 C 1.38562 * 119.74345 * 359.72813 * 16 14 13 18 18 N 1.33767 * 122.06101 * 179.69754 * 17 16 14 19 19 H 0.97002 * 119.63512 * 180.26739 * 18 17 16 20 20 C 1.37231 * 120.73781 * 0.57995 * 18 17 16 21 21 N 1.31997 * 134.47272 * 179.71751 * 20 18 17 22 22 C 1.33420 * 110.92893 * 179.97438 * 21 20 18 23 23 C 1.35785 * 110.89074 * 0.02562 * 22 21 20 24 24 C 1.41374 * 106.45414 * 359.97438 * 23 22 21 25 25 C 1.38762 * 135.65357 * 179.97438 * 24 23 22 26 26 C 1.52994 * 109.47068 * 120.00485 * 2 1 3 27 27 C 1.52999 * 117.49723 * 122.32406 * 26 2 1 28 28 C 1.52995 * 117.50311 * 53.65829 * 26 2 1 29 29 H 1.08996 * 109.47537 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46850 * 299.99841 * 1 2 3 31 31 H 1.09004 * 109.47378 * 59.99219 * 1 2 3 32 32 H 1.08993 * 109.46812 * 60.00291 * 3 2 1 33 33 H 1.09000 * 109.46735 * 180.02562 * 3 2 1 34 34 H 0.96997 * 120.00090 * 0.02562 * 4 3 2 35 35 H 0.96993 * 120.00175 * 180.02562 * 8 7 5 36 36 H 0.97008 * 119.99542 * 354.21879 * 13 2 1 37 37 H 1.08007 * 118.96900 * 359.97438 * 17 16 14 38 38 H 1.07999 * 124.54927 * 179.97438 * 22 21 20 39 39 H 1.08000 * 126.77383 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.73151 * 0.02970 * 25 24 23 41 41 H 1.09007 * 115.54727 * 267.98651 * 26 2 1 42 42 H 1.08997 * 117.50360 * 359.97438 * 27 26 2 43 43 H 1.09001 * 117.49726 * 145.02076 * 27 26 2 44 44 H 1.08997 * 117.50486 * 214.97530 * 28 26 2 45 45 H 1.09001 * 117.49731 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5517 2.1332 -1.1961 5 6 1.8821 3.4443 -1.4126 6 1 2.5030 3.9692 -0.7016 7 6 1.4190 4.0989 -2.5456 8 7 0.6618 3.4595 -3.4118 9 14 1.8703 5.8874 -2.8412 10 1 3.3469 6.0170 -2.9304 11 1 1.2547 6.3498 -4.1109 12 1 1.3674 6.7170 -1.7169 13 7 2.0183 -0.6905 -1.1963 14 6 3.3382 -0.7176 -1.4671 15 8 4.1314 -0.2489 -0.6737 16 6 3.8210 -1.3163 -2.7269 17 6 2.9129 -1.8541 -3.6248 18 7 3.2986 -2.4025 -4.7823 19 1 2.6323 -2.7652 -5.3867 20 6 4.6270 -2.4635 -5.1213 21 7 5.2962 -2.9332 -6.1575 22 6 6.6080 -2.7446 -6.0029 23 6 6.8724 -2.1248 -4.8240 24 6 5.6243 -1.9104 -4.1955 25 6 5.1980 -1.3421 -3.0035 26 6 2.0400 -0.7213 1.2491 27 6 2.9596 -1.9266 1.0429 28 6 1.5173 -2.1351 1.5115 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 0.9937 1.6619 -1.8344 35 1 0.3385 3.9167 -4.2038 36 1 1.3919 -1.1317 -1.7913 37 1 1.8602 -1.8255 -3.3845 38 1 7.3586 -3.0453 -6.7188 39 1 7.8443 -1.8499 -4.4418 40 1 5.9093 -0.9281 -2.3041 41 1 2.2292 -0.0860 2.1145 42 1 3.2010 -2.2059 0.0174 43 1 3.7536 -2.0845 1.7729 44 1 1.3630 -2.4302 2.5493 45 1 0.8103 -2.5515 0.7939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753522873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:18 Heat of formation + Delta-G solvation = 83.272075 kcal Electronic energy + Delta-G solvation = -28447.115325 eV Core-core repulsion = 24659.758731 eV Total energy + Delta-G solvation = -3787.356594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57075 -41.50820 -39.24350 -38.28223 -36.55034 -35.00969 -34.79236 -33.24500 -31.47035 -30.17882 -29.84518 -27.60965 -25.59005 -25.17037 -24.81106 -23.03596 -22.91078 -22.47482 -21.37694 -20.39213 -19.28136 -18.96681 -18.37061 -17.59821 -17.43683 -17.13931 -16.84713 -16.27822 -16.19656 -15.83363 -15.37530 -15.24021 -15.02535 -14.78682 -14.51111 -14.12629 -13.62724 -13.47254 -13.44092 -13.36082 -13.19297 -12.96972 -12.82002 -12.77400 -12.37339 -12.23135 -12.11730 -11.95266 -11.80100 -11.69866 -11.26778 -11.05719 -10.90834 -10.59713 -10.47419 -9.93517 -9.20587 -8.88586 -8.85114 -7.93580 -5.16938 -0.80965 -0.02556 1.32766 1.45823 1.47422 1.52869 1.86618 2.14985 2.37966 2.56425 2.64698 3.03679 3.17438 3.39845 3.43233 3.54391 3.72504 3.83910 4.05373 4.07196 4.09758 4.15611 4.24570 4.42345 4.44696 4.60197 4.65467 4.79683 4.88618 4.91119 4.92939 4.98418 5.00001 5.04904 5.16640 5.27940 5.28460 5.36597 5.39226 5.44605 5.51471 5.61299 5.73597 5.78942 6.10461 6.30613 6.67391 6.99653 7.37203 7.39416 8.13905 8.43811 9.28948 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004747 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.092413 B = 5896.913088 C = 8093.844716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.213 3.787 3 C 0.141 3.859 4 N -0.726 5.726 5 C -0.239 4.239 6 H 0.060 0.940 7 C -0.064 4.064 8 N -0.959 5.959 9 Si 0.958 3.042 10 H -0.289 1.289 11 H -0.292 1.292 12 H -0.279 1.279 13 N -0.703 5.703 14 C 0.583 3.417 15 O -0.555 6.555 16 C -0.246 4.246 17 C 0.218 3.782 18 N -0.468 5.468 19 H 0.446 0.554 20 C 0.226 3.774 21 N -0.555 5.555 22 C 0.031 3.969 23 C -0.233 4.233 24 C -0.201 4.201 25 C 0.084 3.916 26 C -0.162 4.162 27 C -0.167 4.167 28 C -0.152 4.152 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.024 0.976 34 H 0.380 0.620 35 H 0.250 0.750 36 H 0.408 0.592 37 H 0.229 0.771 38 H 0.179 0.821 39 H 0.151 0.849 40 H 0.140 0.860 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -18.111 3.439 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.127 3.873 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.372 4.372 6 H 0.078 0.922 7 C -0.257 4.257 8 N -0.610 5.610 9 Si 0.788 3.212 10 H -0.216 1.216 11 H -0.218 1.218 12 H -0.206 1.206 13 N -0.356 5.356 14 C 0.370 3.630 15 O -0.434 6.434 16 C -0.256 4.256 17 C 0.071 3.929 18 N -0.062 5.062 19 H 0.288 0.712 20 C -0.022 4.022 21 N -0.275 5.275 22 C -0.112 4.112 23 C -0.255 4.255 24 C -0.209 4.209 25 C 0.059 3.941 26 C -0.182 4.182 27 C -0.204 4.204 28 C -0.188 4.188 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.214 0.786 35 H 0.059 0.941 36 H 0.246 0.754 37 H 0.245 0.755 38 H 0.196 0.804 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.122 0.878 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.270 -18.101 3.084 18.364 hybrid contribution 0.433 1.527 -0.333 1.621 sum 0.162 -16.575 2.752 16.802 Atomic orbital electron populations 1.21942 0.91229 1.03570 1.03096 1.19837 0.94732 0.89431 0.83308 1.21146 0.97290 0.91133 0.89116 1.42252 1.61024 1.09529 1.24198 1.19449 1.24335 0.89312 1.04057 0.92217 1.25260 1.01356 1.01446 0.97603 1.69716 1.40763 1.37166 1.13386 0.85439 0.77301 0.81546 0.76864 1.21582 1.21823 1.20557 1.45729 1.06544 1.56187 1.27125 1.17540 0.82810 0.78011 0.84590 1.90775 1.55860 1.47521 1.49219 1.19391 0.93772 1.13407 0.99017 1.22883 1.01654 0.86268 0.82080 1.40277 1.05946 1.43063 1.16876 0.71206 1.20618 0.84555 1.01871 0.95120 1.69475 1.06239 1.27113 1.24634 1.22681 0.91457 0.99765 0.97321 1.21677 0.96592 1.09006 0.98240 1.20275 0.95470 1.08539 0.96600 1.21463 0.94985 0.84946 0.92660 1.22401 1.06109 0.91299 0.98346 1.22898 0.93780 1.01862 1.01908 1.23096 0.96280 0.96485 1.02972 0.88885 0.91070 0.92768 0.96564 0.95785 0.78624 0.94116 0.75433 0.75488 0.80368 0.83171 0.84184 0.88477 0.89456 0.90146 0.87830 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.18 71.98 0.59 -2.65 16 2 C 0.21 5.84 0.55 3.60 0.00 5.84 16 3 C 0.14 5.61 4.83 86.38 0.42 6.03 16 4 N -0.73 -34.69 5.18 -343.46 -1.78 -36.47 16 5 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 6 H 0.06 3.35 7.83 -2.91 -0.02 3.32 16 7 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 8 N -0.96 -55.45 13.06 21.65 0.28 -55.17 16 9 Si 0.96 46.29 29.55 68.60 2.03 48.32 16 10 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 N -0.70 -16.67 4.13 -425.98 -1.76 -18.43 16 14 C 0.58 16.89 5.02 86.72 0.44 17.33 16 15 O -0.56 -20.61 12.28 -4.00 -0.05 -20.66 16 16 C -0.25 -6.11 5.86 -20.18 -0.12 -6.23 16 17 C 0.22 3.46 10.64 84.48 0.90 4.36 16 18 N -0.47 -8.01 5.27 -186.73 -0.98 -9.00 16 19 H 0.45 4.24 8.91 -92.71 -0.83 3.41 16 20 C 0.23 6.19 8.64 135.83 1.17 7.37 16 21 N -0.55 -16.92 11.17 -188.97 -2.11 -19.03 16 22 C 0.03 0.87 11.69 83.88 0.98 1.85 16 23 C -0.23 -6.65 10.99 22.47 0.25 -6.40 16 24 C -0.20 -5.95 6.41 -20.12 -0.13 -6.08 16 25 C 0.08 2.40 9.71 22.94 0.22 2.62 16 26 C -0.16 -3.97 4.81 -10.80 -0.05 -4.02 16 27 C -0.17 -3.87 8.28 30.62 0.25 -3.62 16 28 C -0.15 -2.60 9.68 30.62 0.30 -2.30 16 29 H 0.09 1.40 6.92 -2.39 -0.02 1.38 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.50 6.86 -2.38 -0.02 1.48 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.02 1.12 5.95 -2.39 -0.01 1.10 16 34 H 0.38 18.06 6.35 -92.71 -0.59 17.47 16 35 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.41 6.30 6.44 -92.70 -0.60 5.70 16 37 H 0.23 1.24 6.26 -2.91 -0.02 1.22 16 38 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.14 4.13 7.67 -2.91 -0.02 4.11 16 41 H 0.10 2.58 8.06 -2.38 -0.02 2.56 16 42 H 0.09 2.10 5.12 -2.39 -0.01 2.09 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.11 1.46 7.21 -2.39 -0.02 1.44 16 Total: -1.00 -80.07 363.32 1.21 -78.86 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.95 Total: 33.05 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 6.52 Total: -1.48 kcal Atomic # 7 Polarization: -131.74 SS G_CDS: -6.35 Total: -138.09 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -80.07 1.21 -78.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753522873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.135 kcal (2) G-P(sol) polarization free energy of solvation -80.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds