Wall clock time and date at job start Tue Mar 31 2020 15:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00345 * 2 1 4 4 H 1.08000 * 120.00370 * 203.49235 * 3 2 1 5 5 C 1.38819 * 119.99857 * 23.48623 * 3 2 1 6 6 N 1.31624 * 119.99878 * 15.10712 * 5 3 2 7 7 Si 1.86796 * 120.00149 * 195.10281 * 5 3 2 8 8 H 1.48501 * 109.46942 * 60.00076 * 7 5 3 9 9 H 1.48503 * 109.47011 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46923 * 300.00300 * 7 5 3 11 11 C 1.46498 * 119.99891 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.64080 * 178.31043 * 11 2 1 13 13 C 1.55153 * 110.72135 * 301.45504 * 11 2 1 14 14 C 1.54911 * 101.58144 * 154.04179 * 13 11 2 15 15 N 1.47421 * 104.83143 * 322.98690 * 14 13 11 16 16 C 1.34778 * 125.64935 * 204.08903 * 15 14 13 17 17 O 1.21284 * 120.00353 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99888 * 0.02910 * 16 15 14 19 19 N 1.46503 * 109.47132 * 179.97438 * 18 16 15 20 20 C 1.33986 * 125.01941 * 124.72140 * 19 18 16 21 21 C 1.38254 * 107.90505 * 179.84194 * 20 19 18 22 22 C 1.41124 * 134.81454 * 180.02562 * 21 20 19 23 23 C 1.35654 * 119.53346 * 180.36486 * 22 21 20 24 24 C 1.39684 * 121.72803 * 359.97438 * 23 22 21 25 25 C 1.35644 * 121.81636 * 359.97438 * 24 23 22 26 26 C 1.41149 * 119.59242 * 0.03345 * 25 24 23 27 27 N 1.32064 * 134.67987 * 179.97438 * 26 25 24 28 28 C 1.47018 * 108.70369 * 24.36127 * 15 14 13 29 29 H 1.08999 * 109.46860 * 275.21255 * 1 2 3 30 30 H 1.08998 * 109.47068 * 35.20682 * 1 2 3 31 31 H 1.08994 * 109.47257 * 155.21105 * 1 2 3 32 32 H 0.96995 * 119.99844 * 180.02562 * 6 5 3 33 33 H 1.09000 * 111.00450 * 35.96486 * 13 11 2 34 34 H 1.09000 * 111.03899 * 272.12584 * 13 11 2 35 35 H 1.09001 * 110.36628 * 204.15060 * 14 13 11 36 36 H 1.08998 * 110.46073 * 81.87594 * 14 13 11 37 37 H 1.08994 * 109.47159 * 299.99787 * 18 16 15 38 38 H 1.08996 * 109.47229 * 59.99939 * 18 16 15 39 39 H 1.07996 * 126.04857 * 0.02562 * 20 19 18 40 40 H 1.07995 * 120.23532 * 0.34455 * 22 21 20 41 41 H 1.08007 * 119.13709 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.09588 * 179.97438 * 24 23 22 43 43 H 1.07987 * 120.19991 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.88653 * 118.12542 * 28 15 14 45 45 H 1.09006 * 109.88201 * 239.29457 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1626 1.2246 -0.3728 5 6 1.5420 2.3383 0.4791 6 7 0.4428 2.2524 1.1980 7 14 2.2841 4.0109 0.1037 8 1 2.3290 4.2137 -1.3667 9 1 1.4521 5.0724 0.7252 10 1 3.6616 4.0761 0.6547 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0296 13 6 1.8162 -2.1222 1.2389 14 6 2.1052 -3.5562 0.7292 15 7 1.6992 -3.5421 -0.6879 16 6 1.3358 -4.6193 -1.4118 17 8 1.0198 -4.4896 -2.5755 18 6 1.3220 -5.9852 -0.7750 19 7 0.8943 -6.9798 -1.7620 20 6 1.5867 -8.0764 -2.0982 21 6 0.8592 -8.7623 -3.0531 22 6 1.0495 -9.9566 -3.7804 23 6 0.1096 -10.3516 -4.6753 24 6 -1.0502 -9.6061 -4.8997 25 6 -1.2969 -8.4498 -4.2349 26 6 -0.3626 -7.9770 -3.2884 27 7 -0.2971 -6.9238 -2.4943 28 6 1.7625 -2.1591 -1.1827 29 1 -0.3633 0.0934 1.0234 30 1 -0.3633 0.8397 -0.5925 31 1 -0.3633 -0.9329 -0.4308 32 1 0.0179 3.0576 1.5325 33 1 0.7618 -2.0010 1.4873 34 1 2.4474 -1.8765 2.0929 35 1 1.5139 -4.2831 1.2860 36 1 3.1673 -3.7850 0.8172 37 1 2.3232 -6.2312 -0.4212 38 1 0.6288 -5.9870 0.0660 39 1 2.5424 -8.3738 -1.6927 40 1 1.9373 -10.5518 -3.6260 41 1 0.2616 -11.2669 -5.2281 42 1 -1.7703 -9.9600 -5.6226 43 1 -2.2025 -7.8944 -4.4287 44 1 2.4908 -2.0873 -1.9905 45 1 0.7802 -1.8469 -1.5375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972749421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:45 Heat of formation + Delta-G solvation = 107.024263 kcal Electronic energy + Delta-G solvation = -27042.241475 eV Core-core repulsion = 23255.914853 eV Total energy + Delta-G solvation = -3786.326622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46255 -39.86215 -37.79078 -37.09684 -34.88827 -33.06504 -31.98690 -31.59440 -29.93221 -28.97301 -28.65730 -27.29480 -26.09105 -24.10354 -22.84462 -22.40521 -22.07054 -20.71840 -19.55642 -19.22385 -17.48055 -17.38622 -17.03370 -16.89131 -16.06871 -16.01254 -15.55484 -14.87453 -14.57583 -14.29481 -14.13051 -13.99328 -13.57044 -13.40764 -13.23172 -13.18193 -12.60518 -12.50706 -12.42386 -12.01583 -11.87165 -11.70933 -11.59427 -11.47690 -11.05293 -10.82617 -10.66449 -10.53764 -10.42268 -10.33368 -10.32672 -9.98859 -9.94073 -9.84493 -8.74175 -8.63313 -8.49080 -7.72498 -6.87470 -5.82071 -3.29823 0.49730 1.73247 1.98161 2.34338 2.53146 3.00689 3.34130 3.40429 3.41644 3.77485 3.98264 4.25720 4.37254 4.41767 4.60414 4.69053 4.83638 4.89738 4.96695 5.16103 5.18103 5.23070 5.29529 5.40431 5.42921 5.45661 5.57091 5.64225 5.80040 5.89917 5.98296 6.19730 6.28065 6.34873 6.40118 6.40776 6.47536 6.53204 6.61483 6.73465 6.78445 6.80354 7.27020 7.54505 7.55658 7.64218 7.72246 8.12420 8.29676 9.12237 9.74975 10.23787 11.22530 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.002149 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.220889 B =13024.551471 C =13369.820701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.585 5.585 3 C -0.264 4.264 4 H 0.069 0.931 5 C 0.006 3.994 6 N -0.902 5.902 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.150 4.150 14 C 0.094 3.906 15 N -0.610 5.610 16 C 0.511 3.489 17 O -0.513 6.513 18 C 0.108 3.892 19 N -0.307 5.307 20 C 0.072 3.928 21 C -0.207 4.207 22 C -0.043 4.043 23 C -0.159 4.159 24 C -0.086 4.086 25 C -0.096 4.096 26 C 0.093 3.907 27 N -0.270 5.270 28 C 0.088 3.912 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.003 0.997 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.185 0.815 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -24.611 -2.820 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.305 5.305 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.546 5.546 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.191 4.191 14 C -0.029 4.029 15 N -0.345 5.345 16 C 0.296 3.704 17 O -0.388 6.388 18 C -0.017 4.017 19 N -0.081 5.081 20 C -0.082 4.082 21 C -0.217 4.217 22 C -0.064 4.064 23 C -0.179 4.179 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.062 4.062 27 N -0.096 5.096 28 C -0.036 4.036 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.202 0.798 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.232 -23.158 -2.902 23.446 hybrid contribution 0.814 0.322 -0.192 0.896 sum 3.046 -22.836 -3.094 23.245 Atomic orbital electron populations 1.20813 0.82488 0.95757 0.99689 1.43850 1.01831 0.99861 1.84942 1.19146 0.98888 0.85316 1.36000 0.91286 1.25031 0.98049 0.98642 0.97581 1.70061 1.20959 1.27645 1.35926 0.86315 0.78353 0.83599 0.78130 1.20966 1.21601 1.20836 1.21291 0.96401 0.86021 0.89994 0.90255 1.23392 1.03095 0.92156 1.00437 1.22477 0.99507 1.00011 0.80951 1.48459 1.65948 1.07668 1.12438 1.19859 0.78847 0.84880 0.86788 1.90816 1.46792 1.85107 1.16089 1.21723 1.03481 0.86494 0.89980 1.48074 1.14768 1.16201 1.29062 1.22593 0.98409 0.88756 0.98472 1.19552 0.97615 1.00351 1.04142 1.20186 0.98460 0.93255 0.94478 1.20482 0.95319 1.01089 1.00961 1.20610 0.97238 0.94306 0.98664 1.19908 0.98397 0.97133 0.96235 1.21029 0.95643 0.92442 0.97053 1.77927 1.00624 1.20047 1.10958 1.22805 1.02570 0.79124 0.99070 0.94705 0.94088 0.97806 0.93547 0.90481 0.90136 0.91323 0.91235 0.85314 0.86034 0.79835 0.86134 0.86285 0.85856 0.85581 0.91981 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.76 7.70 59.85 0.46 4.22 16 2 N -0.58 -13.91 2.93 -171.38 -0.50 -14.41 16 3 C -0.26 -6.96 9.59 -15.06 -0.14 -7.10 16 4 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 5 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 6 N -0.90 -25.54 10.86 55.49 0.60 -24.94 16 7 Si 0.91 21.32 29.58 -169.99 -5.03 16.29 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 C 0.17 3.25 3.42 -66.09 -0.23 3.02 16 12 H 0.08 1.45 7.93 -51.93 -0.41 1.04 16 13 C -0.15 -2.30 6.65 -24.58 -0.16 -2.47 16 14 C 0.09 1.05 6.69 -2.53 -0.02 1.04 16 15 N -0.61 -8.89 3.33 -170.51 -0.57 -9.46 16 16 C 0.51 7.70 7.87 -10.99 -0.09 7.62 16 17 O -0.51 -10.33 16.00 5.55 0.09 -10.24 16 18 C 0.11 1.09 5.93 -5.19 -0.03 1.06 16 19 N -0.31 -3.92 3.35 -62.00 -0.21 -4.13 16 20 C 0.07 0.74 11.45 -16.61 -0.19 0.55 16 21 C -0.21 -2.48 6.33 -105.19 -0.67 -3.15 16 22 C -0.04 -0.41 10.09 -39.41 -0.40 -0.81 16 23 C -0.16 -1.43 9.90 -39.97 -0.40 -1.83 16 24 C -0.09 -0.83 9.89 -39.97 -0.40 -1.23 16 25 C -0.10 -1.17 10.08 -39.41 -0.40 -1.57 16 26 C 0.09 1.36 7.49 -83.05 -0.62 0.74 16 27 N -0.27 -4.42 11.56 33.25 0.38 -4.04 16 28 C 0.09 1.57 6.41 -3.06 -0.02 1.55 16 29 H 0.03 0.89 7.32 -51.93 -0.38 0.51 16 30 H 0.04 1.07 7.43 -51.93 -0.39 0.68 16 31 H 0.00 0.08 6.30 -51.93 -0.33 -0.25 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.08 1.32 7.28 -51.93 -0.38 0.94 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.58 7.48 -51.93 -0.39 0.20 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.13 0.71 8.04 -51.93 -0.42 0.29 16 38 H 0.12 1.00 7.85 -51.93 -0.41 0.59 16 39 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.52 6.15 -51.93 -0.32 1.20 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -35.56 370.15 -9.38 -44.94 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.35 Total: -1.29 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -3.38 Total: 1.71 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.29 Total: -56.98 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.56 -9.38 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972749421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.960 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds