Wall clock time and date at job start Tue Mar 31 2020 15:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00345 * 2 1 4 4 H 1.08000 * 120.00370 * 203.49235 * 3 2 1 5 5 C 1.38819 * 119.99857 * 23.48623 * 3 2 1 6 6 N 1.31624 * 119.99878 * 15.10712 * 5 3 2 7 7 Si 1.86796 * 120.00149 * 195.10281 * 5 3 2 8 8 H 1.48501 * 109.46942 * 60.00076 * 7 5 3 9 9 H 1.48503 * 109.47011 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46923 * 300.00300 * 7 5 3 11 11 C 1.46498 * 119.99891 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.64080 * 178.31043 * 11 2 1 13 13 C 1.55153 * 110.72135 * 301.45504 * 11 2 1 14 14 C 1.54911 * 101.58144 * 154.04179 * 13 11 2 15 15 N 1.47421 * 104.83143 * 322.98690 * 14 13 11 16 16 C 1.34778 * 125.64935 * 204.08903 * 15 14 13 17 17 O 1.21284 * 120.00353 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99888 * 0.02910 * 16 15 14 19 19 N 1.46503 * 109.47132 * 179.97438 * 18 16 15 20 20 C 1.33986 * 125.01941 * 124.72140 * 19 18 16 21 21 C 1.38254 * 107.90505 * 179.84194 * 20 19 18 22 22 C 1.41124 * 134.81454 * 180.02562 * 21 20 19 23 23 C 1.35654 * 119.53346 * 180.36486 * 22 21 20 24 24 C 1.39684 * 121.72803 * 359.97438 * 23 22 21 25 25 C 1.35644 * 121.81636 * 359.97438 * 24 23 22 26 26 C 1.41149 * 119.59242 * 0.03345 * 25 24 23 27 27 N 1.32064 * 134.67987 * 179.97438 * 26 25 24 28 28 C 1.47018 * 108.70369 * 24.36127 * 15 14 13 29 29 H 1.08999 * 109.46860 * 275.21255 * 1 2 3 30 30 H 1.08998 * 109.47068 * 35.20682 * 1 2 3 31 31 H 1.08994 * 109.47257 * 155.21105 * 1 2 3 32 32 H 0.96995 * 119.99844 * 180.02562 * 6 5 3 33 33 H 1.09000 * 111.00450 * 35.96486 * 13 11 2 34 34 H 1.09000 * 111.03899 * 272.12584 * 13 11 2 35 35 H 1.09001 * 110.36628 * 204.15060 * 14 13 11 36 36 H 1.08998 * 110.46073 * 81.87594 * 14 13 11 37 37 H 1.08994 * 109.47159 * 299.99787 * 18 16 15 38 38 H 1.08996 * 109.47229 * 59.99939 * 18 16 15 39 39 H 1.07996 * 126.04857 * 0.02562 * 20 19 18 40 40 H 1.07995 * 120.23532 * 0.34455 * 22 21 20 41 41 H 1.08007 * 119.13709 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.09588 * 179.97438 * 24 23 22 43 43 H 1.07987 * 120.19991 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.88653 * 118.12542 * 28 15 14 45 45 H 1.09006 * 109.88201 * 239.29457 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1626 1.2246 -0.3728 5 6 1.5420 2.3383 0.4791 6 7 0.4428 2.2524 1.1980 7 14 2.2841 4.0109 0.1037 8 1 2.3290 4.2137 -1.3667 9 1 1.4521 5.0724 0.7252 10 1 3.6616 4.0761 0.6547 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0296 13 6 1.8162 -2.1222 1.2389 14 6 2.1052 -3.5562 0.7292 15 7 1.6992 -3.5421 -0.6879 16 6 1.3358 -4.6193 -1.4118 17 8 1.0198 -4.4896 -2.5755 18 6 1.3220 -5.9852 -0.7750 19 7 0.8943 -6.9798 -1.7620 20 6 1.5867 -8.0764 -2.0982 21 6 0.8592 -8.7623 -3.0531 22 6 1.0495 -9.9566 -3.7804 23 6 0.1096 -10.3516 -4.6753 24 6 -1.0502 -9.6061 -4.8997 25 6 -1.2969 -8.4498 -4.2349 26 6 -0.3626 -7.9770 -3.2884 27 7 -0.2971 -6.9238 -2.4943 28 6 1.7625 -2.1591 -1.1827 29 1 -0.3633 0.0934 1.0234 30 1 -0.3633 0.8397 -0.5925 31 1 -0.3633 -0.9329 -0.4308 32 1 0.0179 3.0576 1.5325 33 1 0.7618 -2.0010 1.4873 34 1 2.4474 -1.8765 2.0929 35 1 1.5139 -4.2831 1.2860 36 1 3.1673 -3.7850 0.8172 37 1 2.3232 -6.2312 -0.4212 38 1 0.6288 -5.9870 0.0660 39 1 2.5424 -8.3738 -1.6927 40 1 1.9373 -10.5518 -3.6260 41 1 0.2616 -11.2669 -5.2281 42 1 -1.7703 -9.9600 -5.6226 43 1 -2.2025 -7.8944 -4.4287 44 1 2.4908 -2.0873 -1.9905 45 1 0.7802 -1.8469 -1.5375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972749421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:44 Heat of formation + Delta-G solvation = 83.560361 kcal Electronic energy + Delta-G solvation = -27043.258946 eV Core-core repulsion = 23255.914853 eV Total energy + Delta-G solvation = -3787.344093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29851 -41.05158 -39.04886 -38.01831 -36.58434 -34.02336 -33.39185 -32.65876 -31.38011 -29.96353 -29.63420 -28.41602 -28.08128 -25.45295 -24.10910 -23.59729 -22.86302 -21.52283 -20.97293 -20.43846 -18.98103 -18.49544 -18.18543 -17.76456 -17.43713 -16.86265 -16.70390 -16.37359 -15.75304 -15.57559 -15.12183 -14.98449 -14.89755 -14.74822 -14.51836 -14.28006 -13.93997 -13.78350 -13.55663 -13.22315 -12.98375 -12.88045 -12.74282 -12.57939 -12.49776 -12.42740 -12.35316 -12.28063 -12.11199 -11.85566 -11.49685 -11.33029 -11.16340 -10.99542 -10.66087 -9.72731 -9.56929 -8.84068 -8.53480 -7.87012 -5.36187 -0.26035 0.95382 1.20089 1.43649 1.45467 1.49080 1.53290 1.54761 1.93950 2.49050 2.98747 3.16830 3.26088 3.36908 3.54675 3.74825 3.81396 3.96057 3.97967 4.06001 4.20270 4.25616 4.28341 4.33376 4.44071 4.45391 4.57438 4.63798 4.69260 4.72657 4.88975 4.90162 4.98235 5.08849 5.21440 5.25301 5.29767 5.38939 5.59003 5.61051 5.62998 5.63123 5.73553 5.86210 6.11805 6.28288 6.44224 6.70731 6.99806 7.09413 7.80040 8.25516 9.16326 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.002149 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.220889 B =13024.551471 C =13369.820701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.269 4.269 4 H 0.075 0.925 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.968 3.032 8 H -0.284 1.284 9 H -0.296 1.296 10 H -0.269 1.269 11 C 0.166 3.834 12 H 0.086 0.914 13 C -0.144 4.144 14 C 0.103 3.897 15 N -0.609 5.609 16 C 0.506 3.494 17 O -0.576 6.576 18 C 0.114 3.886 19 N -0.319 5.319 20 C 0.097 3.903 21 C -0.236 4.236 22 C -0.036 4.036 23 C -0.174 4.174 24 C -0.068 4.068 25 C -0.144 4.144 26 C 0.067 3.933 27 N -0.343 5.343 28 C 0.100 3.900 29 H 0.014 0.986 30 H 0.008 0.992 31 H 0.019 0.981 32 H 0.249 0.751 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.189 0.811 38 H 0.144 0.856 39 H 0.241 0.759 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.116 0.884 44 H 0.054 0.946 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 -28.101 -1.803 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.324 5.324 3 C -0.398 4.398 4 H 0.093 0.907 5 C -0.246 4.246 6 N -0.580 5.580 7 Si 0.796 3.204 8 H -0.210 1.210 9 H -0.222 1.222 10 H -0.195 1.195 11 C 0.057 3.943 12 H 0.105 0.895 13 C -0.184 4.184 14 C -0.019 4.019 15 N -0.343 5.343 16 C 0.294 3.706 17 O -0.454 6.454 18 C -0.010 4.010 19 N -0.092 5.092 20 C -0.058 4.058 21 C -0.246 4.246 22 C -0.056 4.056 23 C -0.193 4.193 24 C -0.090 4.090 25 C -0.166 4.166 26 C -0.087 4.087 27 N -0.170 5.170 28 C -0.025 4.025 29 H 0.032 0.968 30 H 0.027 0.973 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.206 0.794 38 H 0.162 0.838 39 H 0.258 0.742 40 H 0.175 0.825 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.135 0.865 44 H 0.072 0.928 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.419 -26.693 -1.858 27.301 hybrid contribution -0.114 1.295 -0.577 1.422 sum 5.305 -25.398 -2.435 26.060 Atomic orbital electron populations 1.20436 0.83308 0.95087 0.97780 1.44012 1.01693 1.01288 1.85389 1.19505 0.99061 0.86517 1.34755 0.90710 1.25784 0.98803 1.01894 0.98085 1.70213 1.22436 1.27887 1.37449 0.85331 0.77968 0.79495 0.77582 1.21024 1.22225 1.19477 1.21497 0.96182 0.84577 0.92017 0.89549 1.23225 1.01837 0.94359 0.98992 1.22704 1.02649 0.97898 0.78606 1.48511 1.65790 1.06153 1.13835 1.20844 0.77056 0.86587 0.86136 1.90797 1.49299 1.86228 1.19103 1.22056 1.07268 0.82553 0.89106 1.48273 1.14278 1.17316 1.29372 1.23525 0.99088 0.86848 0.96354 1.20069 0.97242 1.01542 1.05717 1.20649 0.99494 0.92305 0.93180 1.20900 0.94824 1.02143 1.01442 1.21004 0.97850 0.92801 0.97361 1.20080 0.98974 0.99101 0.98398 1.21486 0.97281 0.92787 0.97130 1.77809 1.03519 1.22078 1.13608 1.22363 1.00149 0.81539 0.98495 0.96791 0.97307 0.96214 0.94212 0.92795 0.88995 0.87212 0.87276 0.79384 0.83816 0.74248 0.82532 0.83143 0.83375 0.86546 0.92788 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.00 7.70 127.77 0.98 9.98 16 2 N -0.60 -29.34 2.93 -696.13 -2.04 -31.38 16 3 C -0.27 -14.34 9.59 84.04 0.81 -13.53 16 4 H 0.08 3.82 7.85 -2.91 -0.02 3.80 16 5 C -0.05 -2.76 5.06 84.86 0.43 -2.33 16 6 N -0.93 -54.65 10.86 21.65 0.24 -54.42 16 7 Si 0.97 44.53 29.58 68.60 2.03 46.56 16 8 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 9 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 11 C 0.17 6.13 3.42 46.18 0.16 6.28 16 12 H 0.09 3.06 7.93 -2.39 -0.02 3.04 16 13 C -0.14 -4.13 6.65 31.99 0.21 -3.92 16 14 C 0.10 1.85 6.69 86.86 0.58 2.43 16 15 N -0.61 -16.56 3.33 -811.77 -2.70 -19.26 16 16 C 0.51 14.50 7.87 87.66 0.69 15.19 16 17 O -0.58 -23.80 16.00 -3.04 -0.05 -23.85 16 18 C 0.11 1.84 5.93 85.63 0.51 2.35 16 19 N -0.32 -7.47 3.35 -350.07 -1.17 -8.65 16 20 C 0.10 1.62 11.45 84.37 0.97 2.59 16 21 C -0.24 -5.22 6.33 -20.23 -0.13 -5.35 16 22 C -0.04 -0.58 10.09 22.38 0.23 -0.35 16 23 C -0.17 -2.69 9.90 22.02 0.22 -2.47 16 24 C -0.07 -1.27 9.89 22.02 0.22 -1.06 16 25 C -0.14 -3.77 10.08 22.38 0.23 -3.55 16 26 C 0.07 2.02 7.49 42.16 0.32 2.33 16 27 N -0.34 -11.62 11.56 -48.70 -0.56 -12.18 16 28 C 0.10 3.59 6.41 86.74 0.56 4.15 16 29 H 0.01 0.75 7.32 -2.39 -0.02 0.73 16 30 H 0.01 0.46 7.43 -2.39 -0.02 0.44 16 31 H 0.02 0.90 6.30 -2.39 -0.02 0.88 16 32 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.05 1.81 7.28 -2.39 -0.02 1.79 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.11 1.20 7.48 -2.39 -0.02 1.18 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.19 0.73 8.04 -2.39 -0.02 0.71 16 38 H 0.14 1.72 7.85 -2.39 -0.02 1.70 16 39 H 0.24 0.91 8.06 -2.91 -0.02 0.88 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.12 2.99 8.06 -2.92 -0.02 2.97 16 44 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.04 1.64 6.15 -2.38 -0.01 1.62 16 Total: -1.00 -87.23 370.15 3.70 -83.54 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.99 Total: 6.89 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.96 Total: 12.75 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -6.24 Total: -125.89 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -87.23 3.70 -83.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972749421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.097 kcal (2) G-P(sol) polarization free energy of solvation -87.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds