Wall clock time and date at job start Tue Mar 31 2020 14:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39921 * 125.81986 * 2 1 4 4 C 1.35312 * 107.97220 * 180.02562 * 3 2 1 5 5 N 1.35799 * 107.61297 * 0.02562 * 4 3 2 6 6 C 1.39993 * 126.09438 * 179.97438 * 5 4 3 7 7 C 1.39463 * 120.05516 * 179.97438 * 6 5 4 8 8 C 1.38406 * 117.98503 * 180.02562 * 7 6 5 9 9 C 1.39554 * 117.95302 * 0.02562 * 8 7 6 10 10 N 1.39184 * 120.08729 * 179.97438 * 9 8 7 11 11 C 1.46498 * 119.99896 * 0.02562 * 10 9 8 12 12 C 1.53040 * 109.45290 * 84.96734 * 11 10 9 13 13 C 1.53191 * 109.31462 * 181.37985 * 12 11 10 14 14 N 1.46929 * 108.77251 * 305.36323 * 13 12 11 15 15 C 1.36943 * 120.62913 * 233.58698 * 14 13 12 16 16 H 1.08000 * 119.99404 * 27.69419 * 15 14 13 17 17 C 1.38804 * 119.99837 * 207.69755 * 15 14 13 18 18 N 1.31618 * 120.00488 * 17.35070 * 17 15 14 19 19 Si 1.86806 * 119.99788 * 197.35548 * 17 15 14 20 20 H 1.48500 * 109.46986 * 59.99796 * 19 17 15 21 21 H 1.48495 * 109.47095 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46875 * 300.00013 * 19 17 15 23 23 C 1.46924 * 118.74006 * 53.60682 * 14 13 12 24 24 C 1.53048 * 109.45605 * 205.02773 * 11 10 9 25 25 N 1.32400 * 119.82241 * 0.25434 * 9 8 7 26 26 N 1.28346 * 122.15077 * 359.46504 * 25 9 8 27 27 N 1.30845 * 125.81920 * 180.34679 * 2 1 3 28 28 H 1.08994 * 109.47832 * 89.99624 * 1 2 3 29 29 H 1.09004 * 109.46804 * 209.99564 * 1 2 3 30 30 H 1.09005 * 109.47015 * 329.98815 * 1 2 3 31 31 H 1.08002 * 126.00869 * 0.02562 * 3 2 1 32 32 H 1.07991 * 126.18953 * 180.02562 * 4 3 2 33 33 H 1.08000 * 121.00979 * 0.05305 * 7 6 5 34 34 H 1.07995 * 121.02415 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99812 * 179.97438 * 10 9 8 36 36 H 1.09003 * 109.46150 * 324.99338 * 11 10 9 37 37 H 1.09004 * 109.49060 * 301.32819 * 12 11 10 38 38 H 1.08994 * 109.49889 * 61.42422 * 12 11 10 39 39 H 1.08996 * 109.58661 * 185.57370 * 13 12 11 40 40 H 1.08999 * 109.58740 * 65.14438 * 13 12 11 41 41 H 0.97003 * 120.00197 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.58430 * 186.60482 * 23 14 13 43 43 H 1.08998 * 109.70564 * 66.25092 * 23 14 13 44 44 H 1.09005 * 109.49661 * 298.57592 * 24 11 10 45 45 H 1.08999 * 109.49769 * 58.67377 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3258 1.1346 0.0000 4 6 3.6138 0.7199 -0.0006 5 7 3.6083 -0.6381 -0.0015 6 6 4.7361 -1.4675 -0.0028 7 6 4.5837 -2.8538 -0.0032 8 6 5.7276 -3.6329 -0.0039 9 6 6.9622 -2.9823 -0.0038 10 7 8.1410 -3.7224 -0.0040 11 6 8.0866 -5.1864 -0.0050 12 6 7.9415 -5.6901 -1.4428 13 6 7.8504 -7.2193 -1.4372 14 7 9.0152 -7.7598 -0.7231 15 6 9.8204 -8.6983 -1.3114 16 1 9.9113 -8.7339 -2.3870 17 6 10.5196 -9.6038 -0.5253 18 7 10.1666 -9.7975 0.7277 19 14 11.9619 -10.5473 -1.2459 20 1 13.0016 -9.5900 -1.7017 21 1 12.5340 -11.4441 -0.2098 22 1 11.4961 -11.3583 -2.3993 23 6 9.2994 -7.2745 0.6342 24 6 9.3743 -5.7447 0.6054 25 7 7.0092 -1.6591 0.0021 26 7 5.9476 -0.9380 -0.0023 27 7 2.2727 -1.0610 -0.0064 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.9890 2.1607 0.0004 32 1 4.4879 1.3540 -0.0003 33 1 3.6028 -3.3057 -0.0032 34 1 5.6667 -4.7111 -0.0038 35 1 8.9984 -3.2689 -0.0043 36 1 7.2318 -5.5185 0.5842 37 1 7.0364 -5.2733 -1.8846 38 1 8.8081 -5.3794 -2.0263 39 1 7.8465 -7.5889 -2.4626 40 1 6.9358 -7.5290 -0.9315 41 1 10.6551 -10.4305 1.2769 42 1 10.2516 -7.6806 0.9755 43 1 8.5047 -7.5888 1.3108 44 1 10.2274 -5.4335 0.0025 45 1 9.4889 -5.3668 1.6214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077965307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:37 Heat of formation + Delta-G solvation = 169.855566 kcal Electronic energy + Delta-G solvation = -26820.608803 eV Core-core repulsion = 23069.299502 eV Total energy + Delta-G solvation = -3751.309301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83699 -40.82688 -38.37022 -35.81213 -34.41597 -33.04738 -32.46677 -31.05258 -30.33134 -30.05511 -29.34215 -27.65794 -25.20955 -24.87003 -23.49879 -22.34752 -21.96720 -21.27128 -20.11941 -19.52598 -18.59440 -17.79274 -17.26405 -16.84397 -16.01692 -15.19307 -15.01356 -14.86457 -14.72136 -14.34049 -14.06217 -13.86051 -13.73282 -13.45530 -13.41304 -13.25009 -13.17165 -12.97727 -12.53539 -12.39297 -11.80779 -11.69453 -11.49664 -11.22078 -11.01542 -10.96307 -10.80392 -10.60919 -10.53265 -10.35308 -10.11890 -9.89890 -9.78770 -9.71913 -9.53561 -9.07946 -8.58023 -7.77150 -6.82902 -5.90527 -3.32953 0.57754 0.68031 1.85473 1.91333 2.46342 2.99811 3.32327 3.38563 3.39557 3.53106 3.99169 4.19906 4.40567 4.43623 4.54287 4.63381 4.76699 4.97499 5.04812 5.22240 5.26305 5.27849 5.30994 5.34367 5.37497 5.47110 5.52269 5.55602 5.66417 5.73140 5.84099 5.86915 6.07440 6.24904 6.26112 6.32397 6.35192 6.43969 6.60995 6.77744 6.80970 6.97880 7.16415 7.34393 7.46778 7.53783 7.69579 8.32800 8.62893 9.09033 9.71862 10.27165 11.18457 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.034439 B = 0.002064 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.833526 B =13561.263178 C =13958.837742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.083 3.917 3 C -0.267 4.267 4 C 0.081 3.919 5 N -0.311 5.311 6 C 0.245 3.755 7 C -0.070 4.070 8 C -0.155 4.155 9 C 0.344 3.656 10 N -0.699 5.699 11 C 0.154 3.846 12 C -0.147 4.147 13 C 0.147 3.853 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.066 0.934 17 C 0.004 3.996 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.174 3.826 24 C -0.146 4.146 25 N -0.287 5.287 26 N -0.218 5.218 27 N -0.287 5.287 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.408 0.592 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.020 0.980 41 H 0.256 0.744 42 H 0.094 0.906 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.464 18.494 -0.029 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 C -0.296 4.296 4 C -0.062 4.062 5 N -0.089 5.089 6 C 0.005 3.995 7 C -0.100 4.100 8 C -0.189 4.189 9 C 0.101 3.899 10 N -0.329 5.329 11 C 0.050 3.950 12 C -0.188 4.188 13 C 0.020 3.980 14 N -0.314 5.314 15 C -0.386 4.386 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.047 3.953 24 C -0.186 4.186 25 N -0.139 5.139 26 N -0.063 5.063 27 N -0.109 5.109 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.172 0.828 32 H 0.200 0.800 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.244 0.756 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.289 18.138 0.096 22.485 hybrid contribution 0.299 -0.662 -0.328 0.797 sum -12.990 17.475 -0.232 21.776 Atomic orbital electron populations 1.20220 0.86046 1.03594 1.03250 1.22562 0.97201 0.90726 0.98024 1.21488 0.91392 1.00020 1.16702 1.22912 1.00010 0.84060 0.99200 1.45345 1.03245 1.04104 1.56219 1.19164 0.86156 0.88424 1.05706 1.21762 1.01030 0.91307 0.95877 1.21948 0.90360 1.02616 1.03937 1.20164 0.88417 0.90482 0.90878 1.45065 1.04547 1.06115 1.77183 1.21257 1.00455 0.75886 0.97387 1.22551 1.01182 0.99464 0.95568 1.20882 0.90481 0.89714 0.96958 1.44082 1.27074 1.45837 1.14397 1.19136 1.20218 1.07705 0.91509 0.91594 1.25046 1.00785 0.97085 0.96591 1.70001 1.40192 1.36881 1.07593 0.86354 0.82757 0.79435 0.78133 1.20975 1.21578 1.20817 1.20773 1.02101 0.86155 0.86278 1.22551 0.95324 1.01386 0.99358 1.72997 1.17897 1.02953 1.20099 1.72532 0.93564 1.30304 1.09897 1.77388 0.84765 1.22694 1.26067 0.90205 0.90670 0.90131 0.82771 0.80029 0.82380 0.82325 0.75584 0.90489 0.92933 0.91587 0.92283 0.96232 0.93428 0.88755 0.95985 0.91758 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.44 36.00 0.38 -0.06 16 2 C 0.08 0.83 7.21 -82.38 -0.59 0.24 16 3 C -0.27 -2.45 10.73 -39.99 -0.43 -2.88 16 4 C 0.08 0.87 11.12 -16.84 -0.19 0.69 16 5 N -0.31 -4.05 3.81 -11.96 -0.05 -4.10 16 6 C 0.25 3.38 7.64 -154.08 -1.18 2.21 16 7 C -0.07 -0.87 9.79 -39.06 -0.38 -1.25 16 8 C -0.15 -1.93 8.93 -39.03 -0.35 -2.28 16 9 C 0.34 4.76 7.73 -154.68 -1.20 3.56 16 10 N -0.70 -9.27 5.25 -53.72 -0.28 -9.55 16 11 C 0.15 2.25 2.11 -67.89 -0.14 2.10 16 12 C -0.15 -2.29 5.61 -26.61 -0.15 -2.44 16 13 C 0.15 2.79 6.52 -3.71 -0.02 2.76 16 14 N -0.59 -13.68 3.00 -172.32 -0.52 -14.19 16 15 C -0.26 -6.66 9.58 -15.06 -0.14 -6.81 16 16 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 17 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 18 N -0.90 -25.00 11.19 55.49 0.62 -24.38 16 19 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.17 3.75 5.31 -3.71 -0.02 3.74 16 24 C -0.15 -2.43 5.55 -26.61 -0.15 -2.58 16 25 N -0.29 -4.31 11.53 31.26 0.36 -3.95 16 26 N -0.22 -3.21 11.02 31.37 0.35 -2.87 16 27 N -0.29 -3.63 11.91 33.68 0.40 -3.22 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.16 1.73 7.77 -52.49 -0.41 1.32 16 34 H 0.16 1.76 6.30 -52.49 -0.33 1.43 16 35 H 0.41 5.12 8.73 -40.82 -0.36 4.76 16 36 H 0.08 1.11 6.49 -51.93 -0.34 0.77 16 37 H 0.05 0.73 7.77 -51.93 -0.40 0.33 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 42 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -30.17 370.27 -9.55 -39.73 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.34 Total: 4.06 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -4.65 Total: -2.99 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.88 Total: -62.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.17 -9.55 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077965307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.581 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds