Wall clock time and date at job start Tue Mar 31 2020 16:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00263 * 2 1 4 4 O 1.20825 * 119.99537 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00088 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47131 * 179.97438 * 5 3 2 7 7 N 1.46892 * 109.47234 * 185.47069 * 6 5 3 8 8 C 1.46893 * 111.00126 * 171.89389 * 7 6 5 9 9 C 1.50701 * 109.47499 * 189.99613 * 8 7 6 10 10 O 1.21283 * 119.99809 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00649 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00316 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47351 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99503 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00104 * 179.72109 * 13 12 11 16 16 N 1.31520 * 120.00015 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00142 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47072 * 89.99855 * 17 15 13 19 19 H 1.48500 * 109.47207 * 209.99620 * 17 15 13 20 20 H 1.48501 * 109.47302 * 330.00115 * 17 15 13 21 21 C 1.46899 * 110.99780 * 295.85172 * 7 6 5 22 22 C 1.53000 * 109.46851 * 290.15434 * 21 7 6 23 23 H 1.09003 * 110.33368 * 308.67833 * 22 21 7 24 24 C 1.54480 * 110.37265 * 186.42597 * 22 21 7 25 25 C 1.54508 * 104.06373 * 217.19207 * 24 22 21 26 26 C 1.54476 * 104.06315 * 359.97438 * 25 24 22 27 27 O 1.44422 * 110.37298 * 71.05056 * 22 21 7 28 28 H 1.09001 * 109.47443 * 60.00318 * 1 2 3 29 29 H 1.09004 * 109.47494 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47398 * 300.00225 * 1 2 3 31 31 H 1.09001 * 109.46937 * 59.99774 * 5 3 2 32 32 H 1.08998 * 109.46991 * 299.99704 * 5 3 2 33 33 H 1.08998 * 109.46939 * 65.46411 * 6 5 3 34 34 H 1.09006 * 109.46462 * 305.46779 * 6 5 3 35 35 H 1.09002 * 109.46959 * 69.99995 * 8 7 6 36 36 H 1.08996 * 109.47408 * 309.99637 * 8 7 6 37 37 H 0.97002 * 119.99281 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47164 * 59.99915 * 12 11 9 39 39 H 1.09002 * 109.47069 * 299.99998 * 12 11 9 40 40 H 0.96995 * 119.99855 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.47381 * 50.15670 * 21 7 6 42 42 H 1.09000 * 109.47033 * 170.15878 * 21 7 6 43 43 H 1.09002 * 110.51275 * 335.84003 * 24 22 21 44 44 H 1.09001 * 110.51138 * 98.40700 * 24 22 21 45 45 H 1.09001 * 110.51168 * 118.64978 * 25 24 22 46 46 H 1.09008 * 110.50908 * 241.21799 * 25 24 22 47 47 H 1.08998 * 110.37023 * 142.80861 * 26 25 24 48 48 H 1.08998 * 110.37284 * 265.15094 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4610 2.8206 -0.1337 8 6 5.8978 4.2092 -0.3309 9 6 7.3573 4.2284 -0.7056 10 8 7.9730 3.1877 -0.7997 11 7 7.9786 5.4020 -0.9363 12 6 9.3972 5.4206 -1.3011 13 6 9.8454 6.8451 -1.5033 14 1 9.1434 7.6555 -1.3734 15 6 11.1527 7.1141 -1.8489 16 7 11.5439 8.3574 -2.0249 17 14 12.3683 5.7127 -2.0673 18 1 12.3494 5.2569 -3.4805 19 1 13.7329 6.1820 -1.7168 20 1 11.9889 4.5853 -1.1785 21 6 6.1282 2.2188 1.0284 22 6 5.9092 3.1039 2.2571 23 1 6.1808 4.1357 2.0338 24 6 6.7335 2.5775 3.4529 25 6 5.8178 2.8163 4.6742 26 6 4.5489 3.4592 4.0720 27 8 4.5348 3.0266 2.6939 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.9557 0.7808 -0.8908 32 1 3.9564 0.7805 0.8892 33 1 3.6943 3.2116 0.9338 34 1 3.5310 3.2592 -0.8381 35 1 5.7523 4.7703 0.5922 36 1 5.3117 4.6646 -1.1291 37 1 7.4860 6.2343 -0.8614 38 1 9.5423 4.8599 -2.2246 39 1 9.9835 4.9646 -0.5034 40 1 12.4635 8.5466 -2.2684 41 1 5.7112 1.2291 1.2146 42 1 7.1963 2.1315 0.8293 43 1 6.9426 1.5143 3.3342 44 1 7.6622 3.1394 3.5534 45 1 5.5742 1.8711 5.1595 46 1 6.2937 3.4959 5.3813 47 1 3.6595 3.1013 4.5907 48 1 4.6107 4.5460 4.1286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096593099.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:09 Heat of formation + Delta-G solvation = -156.681798 kcal Electronic energy + Delta-G solvation = -29084.833914 eV Core-core repulsion = 24947.470469 eV Total energy + Delta-G solvation = -4137.363445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72581 -40.12415 -38.87346 -37.13864 -36.43272 -34.25505 -32.44278 -32.37932 -31.89365 -30.34846 -28.69740 -27.84845 -26.48140 -25.38795 -22.88794 -22.32900 -21.51527 -21.22016 -20.13462 -19.71272 -17.91420 -17.27819 -17.09316 -16.86729 -16.70081 -16.14540 -15.82772 -15.74922 -15.47005 -15.05974 -14.56008 -14.33986 -14.20506 -13.97583 -13.71652 -13.36357 -13.27041 -12.86243 -12.67769 -12.52340 -12.42330 -12.28489 -12.08095 -12.00214 -11.75202 -11.51340 -11.39023 -11.16922 -11.10304 -11.03910 -10.99758 -10.77954 -10.72720 -10.62761 -9.98370 -9.86663 -9.50472 -9.15887 -8.78492 -8.24293 -8.09912 -6.22321 -4.24630 2.05349 2.46323 3.21896 3.26778 3.32712 3.40494 3.56599 3.76400 4.29239 4.32957 4.42511 4.54909 4.59723 4.70476 4.78169 4.82615 4.89281 4.92451 4.99585 5.03121 5.12895 5.20294 5.23820 5.31627 5.37791 5.45038 5.46679 5.49428 5.52867 5.63001 5.71438 5.77047 5.82631 5.82763 6.05637 6.14336 6.20164 6.65984 6.77137 6.94358 7.02584 7.06743 7.23680 7.38985 7.57026 8.13773 8.51517 8.75038 8.94971 9.37841 10.89634 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.002800 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.074655 B = 9997.177541 C =11089.082521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.466 3.534 4 O -0.508 6.508 5 C -0.107 4.107 6 C 0.057 3.943 7 N -0.513 5.513 8 C 0.029 3.971 9 C 0.502 3.498 10 O -0.542 6.542 11 N -0.708 5.708 12 C 0.223 3.777 13 C -0.543 4.543 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.893 5.893 17 Si 0.878 3.122 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.261 1.261 21 C 0.051 3.949 22 C 0.031 3.969 23 H 0.074 0.926 24 C -0.146 4.146 25 C -0.154 4.154 26 C 0.041 3.959 27 O -0.367 6.367 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.021 0.979 39 H 0.024 0.976 40 H 0.267 0.733 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.091 -14.930 11.015 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.396 6.396 5 C -0.145 4.145 6 C -0.070 4.070 7 N -0.235 5.235 8 C -0.102 4.102 9 C 0.286 3.714 10 O -0.420 6.420 11 N -0.357 5.357 12 C 0.100 3.900 13 C -0.581 4.581 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.185 1.185 21 C -0.077 4.077 22 C -0.028 4.028 23 H 0.092 0.908 24 C -0.185 4.185 25 C -0.191 4.191 26 C -0.036 4.036 27 O -0.286 6.286 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.229 0.771 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.743 -15.587 10.321 26.472 hybrid contribution 0.206 0.529 0.768 0.955 sum -18.538 -15.058 11.089 26.332 Atomic orbital electron populations 1.23238 0.76538 1.03536 1.02516 1.86514 1.23314 1.33783 1.84296 1.23817 0.92225 0.81146 0.71909 1.90668 1.67360 1.36301 1.45235 1.21320 0.86573 1.00294 1.06275 1.22094 0.87358 0.94196 1.03393 1.61796 1.05291 1.16775 1.39621 1.22082 0.95214 0.90520 1.02344 1.20329 0.88406 0.84421 0.78225 1.90601 1.67159 1.32071 1.52162 1.46177 1.13405 1.07462 1.68649 1.19463 0.76984 0.98107 0.95412 1.21099 0.96985 0.90704 1.49347 0.90284 1.24806 0.98037 0.95746 0.94104 1.69885 1.17998 1.18353 1.46749 0.86806 0.80485 0.82798 0.79517 1.19832 1.20968 1.18516 1.22710 1.02803 0.97161 0.85060 1.23972 0.82020 1.00730 0.96101 0.90838 1.22892 0.99126 1.02659 0.93773 1.22909 0.96272 1.01669 0.98290 1.23408 0.98326 0.98626 0.83217 1.89173 1.26002 1.87857 1.25610 0.91920 0.88223 0.91989 0.86953 0.87497 0.90788 0.90242 0.91549 0.87966 0.77101 0.96137 0.95819 0.92274 0.89939 0.86621 0.90416 0.90328 0.90858 0.90678 0.89460 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.65 10.56 -39.26 -0.41 -4.06 16 3 C 0.47 5.29 7.96 36.01 0.29 5.58 16 4 O -0.51 -7.07 15.66 -18.75 -0.29 -7.36 16 5 C -0.11 -1.09 5.57 -27.88 -0.16 -1.24 16 6 C 0.06 0.67 4.00 -3.83 -0.02 0.66 16 7 N -0.51 -6.75 4.46 -236.09 -1.05 -7.80 16 8 C 0.03 0.40 5.11 -4.98 -0.03 0.38 16 9 C 0.50 9.09 7.59 -10.98 -0.08 9.01 16 10 O -0.54 -11.54 14.31 5.55 0.08 -11.46 16 11 N -0.71 -13.84 5.55 -61.47 -0.34 -14.18 16 12 C 0.22 5.35 4.50 -5.20 -0.02 5.33 16 13 C -0.54 -14.71 9.83 -34.44 -0.34 -15.04 16 14 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 17 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 21 C 0.05 0.63 4.55 -3.82 -0.02 0.61 16 22 C 0.03 0.35 2.88 -25.95 -0.07 0.28 16 23 H 0.07 0.92 5.78 -51.93 -0.30 0.62 16 24 C -0.15 -1.45 6.63 -25.16 -0.17 -1.61 16 25 C -0.15 -1.27 7.09 -25.16 -0.18 -1.45 16 26 C 0.04 0.37 7.63 37.93 0.29 0.66 16 27 O -0.37 -4.17 8.48 -35.23 -0.30 -4.47 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.11 1.00 6.57 -51.93 -0.34 0.65 16 33 H 0.07 0.94 5.27 -51.93 -0.27 0.67 16 34 H 0.08 0.96 7.77 -51.93 -0.40 0.56 16 35 H 0.07 0.83 5.69 -51.93 -0.30 0.53 16 36 H 0.10 1.25 7.96 -51.93 -0.41 0.84 16 37 H 0.40 6.83 8.32 -40.82 -0.34 6.49 16 38 H 0.02 0.52 7.58 -51.93 -0.39 0.13 16 39 H 0.02 0.60 7.18 -51.93 -0.37 0.23 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 0.91 6.11 -51.93 -0.32 0.59 16 42 H 0.12 1.73 6.01 -51.93 -0.31 1.42 16 43 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -33.24 382.09 -7.55 -40.79 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.55 Total: 5.24 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 0.47 Total: 6.52 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.62 Total: -47.54 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.93 Total: -27.34 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.24 -7.55 -40.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096593099.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.892 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds