Wall clock time and date at job start Tue Mar 31 2020 16:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00087 * 2 1 4 4 O 1.20824 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00293 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47267 * 179.97438 * 5 3 2 7 7 N 1.46902 * 109.46908 * 179.97438 * 6 5 3 8 8 C 1.46902 * 110.99822 * 187.83436 * 7 6 5 9 9 C 1.50695 * 109.46819 * 163.36842 * 8 7 6 10 10 O 1.21282 * 120.00236 * 359.49642 * 9 8 7 11 11 N 1.34786 * 119.99892 * 179.49885 * 9 8 7 12 12 C 1.46498 * 119.99900 * 185.00897 * 11 9 8 13 13 C 1.50703 * 109.47002 * 184.91701 * 12 11 9 14 14 H 1.07998 * 119.99772 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99957 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00492 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00070 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47030 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47349 * 120.00229 * 17 15 13 20 20 H 1.48501 * 109.47279 * 240.00013 * 17 15 13 21 21 C 1.46900 * 110.99763 * 63.88855 * 7 6 5 22 22 C 1.53000 * 109.47251 * 66.25362 * 21 7 6 23 23 H 1.08993 * 110.27855 * 54.31458 * 22 21 7 24 24 C 1.54952 * 110.30846 * 176.40744 * 22 21 7 25 25 C 1.55415 * 100.89132 * 155.28811 * 24 22 21 26 26 C 1.54382 * 102.31086 * 325.98803 * 25 24 22 27 27 O 1.43240 * 107.58865 * 21.28483 * 26 25 24 28 28 H 1.09007 * 109.46748 * 299.99643 * 1 2 3 29 29 H 1.09001 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47705 * 59.99514 * 1 2 3 31 31 H 1.09001 * 109.47286 * 300.00896 * 5 3 2 32 32 H 1.09009 * 109.46889 * 60.00168 * 5 3 2 33 33 H 1.08998 * 109.47142 * 300.00428 * 6 5 3 34 34 H 1.08999 * 109.46874 * 60.00490 * 6 5 3 35 35 H 1.08990 * 109.47346 * 283.37094 * 8 7 6 36 36 H 1.09001 * 109.46551 * 43.37157 * 8 7 6 37 37 H 0.96999 * 119.99443 * 5.00645 * 11 9 8 38 38 H 1.09004 * 109.46979 * 304.91347 * 12 11 9 39 39 H 1.09001 * 109.47142 * 64.91477 * 12 11 9 40 40 H 0.96999 * 120.00742 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.47265 * 186.25398 * 21 7 6 42 42 H 1.08998 * 109.47216 * 306.24849 * 21 7 6 43 43 H 1.09006 * 111.12157 * 273.27791 * 24 22 21 44 44 H 1.08998 * 111.12386 * 37.43615 * 24 22 21 45 45 H 1.08997 * 110.87732 * 207.75275 * 25 24 22 46 46 H 1.08998 * 110.93410 * 84.25200 * 25 24 22 47 47 H 1.08999 * 109.82915 * 261.77640 * 26 25 24 48 48 H 1.08993 * 109.83084 * 140.80340 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4671 2.8190 -0.0011 8 6 5.9217 4.2034 0.1854 9 6 7.3745 4.2053 0.5858 10 8 7.9699 3.1564 0.7130 11 7 8.0122 5.3728 0.8025 12 6 9.4499 5.3809 1.0839 13 6 9.8909 6.7856 1.4054 14 1 9.1721 7.5916 1.4010 15 6 11.2118 7.0416 1.7062 16 7 12.0871 6.0601 1.7121 17 14 11.7584 8.7827 2.1054 18 1 10.5909 9.6974 2.0306 19 1 12.3303 8.8202 3.4754 20 1 12.7886 9.2148 1.1270 21 6 6.0244 2.2433 -1.2323 22 6 5.6191 3.1072 -2.4282 23 1 5.9099 4.1443 -2.2609 24 6 6.2714 2.5686 -3.7264 25 6 5.2808 3.1048 -4.7972 26 6 3.9275 3.0360 -4.0574 27 8 4.2031 3.0163 -2.6519 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 3.9564 0.7805 0.8891 32 1 3.9557 0.7810 -0.8909 33 1 3.6100 3.2360 -0.8910 34 1 3.6107 3.2364 0.8890 35 1 5.8011 4.7542 -0.7473 36 1 5.3287 4.6783 0.9671 37 1 7.5192 6.2076 0.7720 38 1 9.6573 4.7314 1.9344 39 1 9.9931 5.0204 0.2104 40 1 13.0165 6.2402 1.9234 41 1 7.1114 2.2114 -1.1589 42 1 5.6397 1.2324 -1.3673 43 1 7.2685 2.9859 -3.8675 44 1 6.2997 1.4790 -3.7290 45 1 5.2748 2.4620 -5.6774 46 1 5.5216 4.1320 -5.0708 47 1 3.3959 2.1281 -4.3426 48 1 3.3263 3.9109 -4.3042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096593100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:13 Heat of formation + Delta-G solvation = -159.355960 kcal Electronic energy + Delta-G solvation = -29010.721882 eV Core-core repulsion = 24873.242476 eV Total energy + Delta-G solvation = -4137.479406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68692 -40.06047 -38.73209 -37.06560 -36.37528 -34.09523 -32.48923 -32.31593 -31.82928 -30.32891 -28.41422 -27.59967 -26.30012 -25.33754 -22.82250 -22.33478 -21.84296 -21.24301 -20.05659 -19.45744 -17.88728 -17.23058 -17.06222 -16.85114 -16.68185 -16.25160 -15.68853 -15.52624 -15.24720 -14.91556 -14.51914 -14.37061 -14.10541 -13.83977 -13.52389 -13.36151 -13.19803 -12.88493 -12.74415 -12.38847 -12.12664 -12.08971 -12.03738 -11.88429 -11.70774 -11.44118 -11.29283 -11.13113 -11.07879 -11.00375 -10.95472 -10.87484 -10.78255 -10.58663 -10.30656 -9.68234 -9.36901 -8.99581 -8.72195 -8.07347 -7.82775 -6.16168 -4.22682 2.10004 2.50752 3.23576 3.30897 3.33845 3.41916 3.53196 3.82598 4.28257 4.32427 4.49811 4.56061 4.65313 4.67694 4.84184 4.85069 4.91757 4.94153 4.98951 5.08711 5.20001 5.23152 5.25914 5.38855 5.44739 5.47650 5.50843 5.54234 5.60076 5.65790 5.68408 5.76159 5.85897 5.93984 6.13073 6.17491 6.25658 6.85194 7.00139 7.09487 7.34330 7.48849 7.53267 7.61671 7.70162 7.98638 8.66990 8.81230 9.16232 9.44370 10.94015 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002617 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.820714 B =10696.244188 C =11788.127814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.466 3.534 4 O -0.508 6.508 5 C -0.106 4.106 6 C 0.057 3.943 7 N -0.512 5.512 8 C 0.029 3.971 9 C 0.500 3.500 10 O -0.538 6.538 11 N -0.717 5.717 12 C 0.251 3.749 13 C -0.541 4.541 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.052 3.948 22 C 0.036 3.964 23 H 0.076 0.924 24 C -0.146 4.146 25 C -0.155 4.155 26 C 0.046 3.954 27 O -0.372 6.372 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.389 0.611 38 H 0.029 0.971 39 H 0.023 0.977 40 H 0.265 0.735 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.676 -9.883 -10.861 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.309 3.691 4 O -0.395 6.395 5 C -0.143 4.143 6 C -0.070 4.070 7 N -0.234 5.234 8 C -0.102 4.102 9 C 0.284 3.716 10 O -0.416 6.416 11 N -0.367 5.367 12 C 0.131 3.869 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.077 4.077 22 C -0.023 4.023 23 H 0.093 0.907 24 C -0.185 4.185 25 C -0.193 4.193 26 C -0.030 4.030 27 O -0.292 6.292 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.221 0.779 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.229 -10.674 -10.162 25.028 hybrid contribution -0.208 1.928 -0.702 2.062 sum -20.436 -8.746 -10.863 24.742 Atomic orbital electron populations 1.23229 0.76620 1.03493 1.02478 1.86517 1.23254 1.33857 1.84342 1.23838 0.92251 0.81110 0.71893 1.90663 1.67359 1.36288 1.45205 1.21311 0.86450 1.00383 1.06200 1.22152 0.87202 0.94163 1.03490 1.61711 1.07677 1.18040 1.35928 1.22100 0.95667 0.90335 1.02095 1.20305 0.88054 0.84685 0.78606 1.90634 1.67986 1.31322 1.51616 1.46450 1.12645 1.07255 1.70317 1.19073 0.73814 0.97363 0.96686 1.21275 0.94401 0.93243 1.49064 0.91894 1.24950 0.96408 0.97661 0.95042 1.69981 1.03192 1.31426 1.47721 0.86379 0.78700 0.83849 0.78089 1.19650 1.20792 1.20847 1.22660 1.02366 0.97737 0.84897 1.23970 0.81056 1.00615 0.96640 0.90670 1.23236 0.99751 1.01861 0.93620 1.23110 0.94906 1.02306 0.98952 1.23122 0.96749 1.01124 0.82019 1.88508 1.23040 1.95289 1.22385 0.91961 0.88255 0.92021 0.87114 0.87528 0.90251 0.90514 0.91593 0.88365 0.77863 0.95272 0.95927 0.92536 0.87454 0.89944 0.89611 0.90125 0.90221 0.90630 0.91734 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.76 10.56 -39.26 -0.41 -4.18 16 3 C 0.47 5.46 7.96 36.01 0.29 5.74 16 4 O -0.51 -7.22 15.73 -18.75 -0.29 -7.52 16 5 C -0.11 -1.13 5.70 -27.88 -0.16 -1.29 16 6 C 0.06 0.70 3.80 -3.82 -0.01 0.69 16 7 N -0.51 -7.08 4.34 -236.08 -1.02 -8.10 16 8 C 0.03 0.42 5.30 -4.98 -0.03 0.39 16 9 C 0.50 9.67 7.58 -10.98 -0.08 9.59 16 10 O -0.54 -12.44 14.86 5.56 0.08 -12.35 16 11 N -0.72 -14.79 5.54 -61.47 -0.34 -15.13 16 12 C 0.25 6.57 5.45 -5.19 -0.03 6.55 16 13 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 17 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.05 0.66 4.73 -3.82 -0.02 0.64 16 22 C 0.04 0.41 3.08 -25.70 -0.08 0.33 16 23 H 0.08 0.93 5.88 -51.93 -0.31 0.62 16 24 C -0.15 -1.38 6.58 -24.42 -0.16 -1.54 16 25 C -0.16 -1.25 7.02 -24.72 -0.17 -1.43 16 26 C 0.05 0.42 7.80 37.88 0.30 0.72 16 27 O -0.37 -4.26 7.83 -35.23 -0.28 -4.53 16 28 H 0.06 0.46 8.13 -51.92 -0.42 0.04 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 1.04 6.37 -51.92 -0.33 0.71 16 33 H 0.08 1.05 4.98 -51.93 -0.26 0.79 16 34 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 35 H 0.07 0.86 5.55 -51.93 -0.29 0.57 16 36 H 0.10 1.27 7.83 -51.93 -0.41 0.86 16 37 H 0.39 6.90 8.33 -40.82 -0.34 6.56 16 38 H 0.03 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.11 1.64 6.53 -51.93 -0.34 1.30 16 42 H 0.08 0.93 6.12 -51.93 -0.32 0.61 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -33.58 386.23 -7.84 -41.42 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.59 Total: 5.57 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 0.49 Total: 8.45 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.63 Total: -48.46 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.90 Total: -28.58 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.58 -7.84 -41.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096593100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.938 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds