Wall clock time and date at job start Tue Mar 31 2020 15:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47211 * 2 1 4 4 C 1.36936 * 119.99624 * 273.89134 * 3 2 1 5 5 H 1.07994 * 120.00475 * 38.23110 * 4 3 2 6 6 C 1.38818 * 119.99588 * 218.22948 * 4 3 2 7 7 N 1.31615 * 120.00263 * 19.63855 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 199.63959 * 6 4 3 9 9 H 1.48499 * 109.47042 * 59.99575 * 8 6 4 10 10 H 1.48500 * 109.47243 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46822 * 300.00273 * 8 6 4 12 12 C 1.46495 * 119.99893 * 93.89711 * 3 2 1 13 13 C 1.50703 * 109.46961 * 269.99589 * 12 3 2 14 14 N 1.32161 * 119.91173 * 269.98243 * 13 12 3 15 15 C 1.33109 * 120.08429 * 180.02562 * 14 13 12 16 16 N 1.37999 * 120.03961 * 179.97438 * 15 14 13 17 17 N 1.32859 * 119.91220 * 359.74448 * 15 14 13 18 18 C 1.32847 * 119.82392 * 0.50374 * 17 15 14 19 19 N 1.38136 * 120.03986 * 179.77173 * 18 17 15 20 20 C 1.39831 * 120.00473 * 353.67797 * 19 18 17 21 21 C 1.38910 * 120.07122 * 339.30056 * 20 19 18 22 22 C 1.38091 * 119.92746 * 179.97438 * 21 20 19 23 23 C 1.38302 * 120.06875 * 359.97438 * 22 21 20 24 24 C 1.38256 * 120.15120 * 0.02562 * 23 22 21 25 25 C 1.38133 * 120.07385 * 359.97438 * 24 23 22 26 26 C 1.50697 * 120.03773 * 179.97438 * 25 24 23 27 27 N 1.32137 * 119.90792 * 89.99754 * 13 12 3 28 28 H 1.08998 * 109.47103 * 299.99991 * 1 2 3 29 29 H 1.08998 * 109.46869 * 59.99870 * 1 2 3 30 30 H 1.08999 * 109.47369 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46859 * 240.00102 * 2 1 3 32 32 H 1.09001 * 109.47362 * 120.00225 * 2 1 3 33 33 H 0.97000 * 120.00458 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47275 * 150.00132 * 12 3 2 35 35 H 1.09002 * 109.47091 * 29.99480 * 12 3 2 36 36 H 0.96996 * 120.00528 * 0.02562 * 16 15 14 37 37 H 0.96997 * 119.99306 * 179.97438 * 16 15 14 38 38 H 0.97010 * 119.99430 * 173.67853 * 19 18 17 39 39 H 1.08001 * 120.03977 * 359.95350 * 21 20 19 40 40 H 1.08001 * 119.95896 * 179.72750 * 22 21 20 41 41 H 1.08000 * 119.92128 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.96699 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.47358 * 270.01986 * 26 25 24 44 44 H 1.08998 * 109.47362 * 30.02474 * 26 25 24 45 45 H 1.09006 * 109.46585 * 150.02598 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1707 2.0535 -1.1832 5 1 1.4508 1.9196 -1.9770 6 6 3.2505 2.9072 -1.3623 7 7 4.3137 2.7936 -0.5948 8 14 3.1948 4.2174 -2.6926 9 1 2.0525 5.1319 -2.4392 10 1 4.4615 4.9924 -2.6777 11 1 3.0256 3.5699 -4.0183 12 6 2.3438 2.0431 1.2658 13 6 1.1189 2.7426 1.7963 14 7 0.8776 3.9969 1.4571 15 6 -0.2030 4.6183 1.9241 16 7 -0.4539 5.9282 1.5698 17 7 -1.0420 3.9742 2.7281 18 6 -0.7933 2.7150 3.0707 19 7 -1.6602 2.0427 3.9101 20 6 -2.7267 2.7238 4.5051 21 6 -2.6910 4.1077 4.6206 22 6 -3.7461 4.7774 5.2082 23 6 -4.8376 4.0718 5.6809 24 6 -4.8763 2.6944 5.5675 25 6 -3.8242 2.0184 4.9808 26 6 -3.8670 0.5170 4.8582 27 7 0.2894 2.1003 2.5996 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 5.0681 3.3904 -0.7197 34 1 3.1362 2.7731 1.1009 35 1 2.6794 1.2995 1.9888 36 1 0.1572 6.3967 0.9798 37 1 -1.2417 6.3802 1.9102 38 1 -1.5291 1.0979 4.0868 39 1 -1.8389 4.6592 4.2515 40 1 -3.7169 5.8529 5.3022 41 1 -5.6616 4.5980 6.1397 42 1 -5.7299 2.1464 5.9381 43 1 -3.4226 0.0671 5.7460 44 1 -4.9023 0.1894 4.7643 45 1 -3.3068 0.2086 3.9754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103470913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:23 Heat of formation + Delta-G solvation = 133.338492 kcal Electronic energy + Delta-G solvation = -28197.813345 eV Core-core repulsion = 24444.920545 eV Total energy + Delta-G solvation = -3752.892800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.10500 -39.55407 -36.37520 -36.17527 -34.66652 -33.12332 -31.91738 -31.89412 -31.18313 -29.41422 -29.14578 -26.98229 -26.60473 -23.99102 -23.87760 -22.40380 -21.64612 -21.12643 -20.28041 -18.74444 -17.93400 -16.98036 -16.72768 -16.03521 -15.65228 -15.36787 -15.22182 -14.92663 -14.48120 -14.05616 -13.96910 -13.72348 -13.71398 -13.57471 -13.18177 -12.90558 -12.59613 -12.45274 -12.37569 -11.85784 -11.84131 -11.38735 -11.31121 -11.13411 -11.01277 -10.84352 -10.71770 -10.50914 -10.19263 -10.03171 -9.78737 -9.48601 -8.96070 -8.83003 -8.60326 -8.50702 -8.49321 -7.64190 -6.67301 -5.85542 -3.43302 1.22426 1.44573 1.79623 2.06604 2.78628 3.38540 3.43090 3.47548 3.49775 3.84127 4.40467 4.53412 4.61084 4.76275 4.84307 4.93171 5.12497 5.19368 5.30711 5.41174 5.46164 5.50783 5.56629 5.66691 5.74368 5.98866 6.09263 6.10361 6.35870 6.36664 6.39474 6.45566 6.57475 6.61032 6.68013 6.70488 6.86958 6.91491 6.93781 7.07143 7.18457 7.22480 7.43780 7.59612 7.79218 7.85691 8.00744 8.46449 9.09928 9.17980 9.73135 10.29502 11.16213 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.003618 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.970439 B = 7737.072139 C = 8791.014246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 N -0.563 5.563 4 C -0.261 4.261 5 H 0.057 0.943 6 C 0.027 3.973 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.283 1.283 12 C 0.201 3.799 13 C 0.427 3.573 14 N -0.601 5.601 15 C 0.612 3.388 16 N -0.814 5.814 17 N -0.653 5.653 18 C 0.607 3.393 19 N -0.629 5.629 20 C 0.177 3.823 21 C -0.133 4.133 22 C -0.105 4.105 23 C -0.150 4.150 24 C -0.100 4.100 25 C -0.130 4.130 26 C -0.114 4.114 27 N -0.624 5.624 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.258 0.742 34 H 0.124 0.876 35 H 0.058 0.942 36 H 0.417 0.583 37 H 0.409 0.591 38 H 0.422 0.578 39 H 0.161 0.839 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.238 1.563 11.945 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 N -0.282 5.282 4 C -0.391 4.391 5 H 0.075 0.925 6 C -0.174 4.174 7 N -0.522 5.522 8 Si 0.732 3.268 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.209 1.209 12 C 0.071 3.929 13 C 0.150 3.850 14 N -0.333 5.333 15 C 0.245 3.755 16 N -0.364 5.364 17 N -0.394 5.394 18 C 0.241 3.759 19 N -0.258 5.258 20 C 0.080 3.920 21 C -0.155 4.155 22 C -0.124 4.124 23 C -0.169 4.169 24 C -0.118 4.118 25 C -0.134 4.134 26 C -0.170 4.170 27 N -0.357 5.357 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.076 0.924 36 H 0.248 0.752 37 H 0.239 0.761 38 H 0.262 0.738 39 H 0.178 0.822 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.982 1.655 11.856 18.407 hybrid contribution -0.504 0.881 -0.730 1.251 sum -14.486 2.536 11.127 18.441 Atomic orbital electron populations 1.22339 1.00147 0.99081 1.01308 1.20891 0.91559 0.86350 0.99193 1.43655 1.75320 1.07973 1.01213 1.18892 1.04706 1.23038 0.92422 0.92493 1.25132 0.94005 1.00431 0.97842 1.69896 1.04045 1.37562 1.40701 0.86388 0.76982 0.82063 0.81363 1.20690 1.21515 1.20900 1.20127 0.89312 0.96806 0.86633 1.25545 0.94563 0.84349 0.80541 1.68734 1.21033 1.13037 1.30533 1.19392 0.85019 0.87037 0.84094 1.41608 1.30681 1.09124 1.54943 1.68021 1.35008 1.10645 1.25685 1.19059 0.86054 0.85218 0.85546 1.41482 1.26033 1.12208 1.46062 1.17571 0.87015 0.92011 0.95442 1.21836 1.01216 0.92960 0.99441 1.21013 0.93718 0.99604 0.98067 1.21014 0.99010 0.94169 1.02737 1.20708 0.97494 0.94248 0.99388 1.19514 0.93637 0.96036 1.04207 1.20703 1.02941 0.91345 1.02059 1.68611 1.06214 1.39890 1.21015 0.92991 0.93964 0.94497 0.93261 0.94136 0.93173 0.85856 0.92382 0.75181 0.76083 0.73839 0.82218 0.86287 0.86569 0.86184 0.91269 0.91242 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 10.22 37.16 0.38 -2.95 16 2 C 0.15 3.12 6.43 -4.04 -0.03 3.10 16 3 N -0.56 -13.89 2.41 -174.61 -0.42 -14.31 16 4 C -0.26 -7.05 9.47 -15.06 -0.14 -7.19 16 5 H 0.06 1.58 7.90 -52.49 -0.41 1.16 16 6 C 0.03 0.74 4.99 -17.43 -0.09 0.65 16 7 N -0.88 -24.39 11.40 55.49 0.63 -23.76 16 8 Si 0.90 21.49 29.60 -169.99 -5.03 16.46 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 C 0.20 4.76 5.81 -5.19 -0.03 4.73 16 13 C 0.43 9.51 7.14 -156.58 -1.12 8.39 16 14 N -0.60 -13.23 10.46 -11.52 -0.12 -13.35 16 15 C 0.61 11.46 8.76 -322.13 -2.82 8.64 16 16 N -0.81 -11.37 9.05 29.86 0.27 -11.10 16 17 N -0.65 -11.71 6.54 -14.71 -0.10 -11.80 16 18 C 0.61 11.12 8.30 -321.92 -2.67 8.45 16 19 N -0.63 -9.38 5.19 -11.51 -0.06 -9.44 16 20 C 0.18 2.47 6.48 -83.72 -0.54 1.92 16 21 C -0.13 -1.85 8.70 -39.39 -0.34 -2.19 16 22 C -0.11 -1.21 10.04 -39.61 -0.40 -1.61 16 23 C -0.15 -1.56 10.04 -39.55 -0.40 -1.96 16 24 C -0.10 -1.05 9.70 -39.61 -0.38 -1.43 16 25 C -0.13 -1.53 5.90 -104.43 -0.62 -2.14 16 26 C -0.11 -1.05 9.45 36.00 0.34 -0.71 16 27 N -0.62 -12.57 9.13 -11.48 -0.10 -12.67 16 28 H 0.05 1.07 6.61 -51.93 -0.34 0.72 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.06 8.07 -51.93 -0.42 0.64 16 32 H 0.04 0.81 7.85 -51.93 -0.41 0.40 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.12 3.26 5.49 -51.93 -0.29 2.98 16 35 H 0.06 1.30 7.87 -51.93 -0.41 0.89 16 36 H 0.42 5.46 8.95 -40.82 -0.37 5.10 16 37 H 0.41 4.48 8.95 -40.82 -0.37 4.12 16 38 H 0.42 5.56 7.35 -40.82 -0.30 5.26 16 39 H 0.16 2.44 5.27 -52.49 -0.28 2.16 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 45 H 0.06 0.63 6.91 -51.93 -0.36 0.27 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -30.58 372.75 -14.21 -44.79 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -6.04 Total: 13.90 kcal Atomic # 6 Polarization: 24.54 SS G_CDS: -8.86 Total: 15.68 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: 0.10 Total: -96.45 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.58 -14.21 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103470913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.127 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds