Wall clock time and date at job start Tue Mar 31 2020 15:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47211 * 2 1 4 4 C 1.36936 * 119.99624 * 273.89134 * 3 2 1 5 5 H 1.07994 * 120.00475 * 38.23110 * 4 3 2 6 6 C 1.38818 * 119.99588 * 218.22948 * 4 3 2 7 7 N 1.31615 * 120.00263 * 19.63855 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 199.63959 * 6 4 3 9 9 H 1.48499 * 109.47042 * 59.99575 * 8 6 4 10 10 H 1.48500 * 109.47243 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46822 * 300.00273 * 8 6 4 12 12 C 1.46495 * 119.99893 * 93.89711 * 3 2 1 13 13 C 1.50703 * 109.46961 * 269.99589 * 12 3 2 14 14 N 1.32161 * 119.91173 * 269.98243 * 13 12 3 15 15 C 1.33109 * 120.08429 * 180.02562 * 14 13 12 16 16 N 1.37999 * 120.03961 * 179.97438 * 15 14 13 17 17 N 1.32859 * 119.91220 * 359.74448 * 15 14 13 18 18 C 1.32847 * 119.82392 * 0.50374 * 17 15 14 19 19 N 1.38136 * 120.03986 * 179.77173 * 18 17 15 20 20 C 1.39831 * 120.00473 * 353.67797 * 19 18 17 21 21 C 1.38910 * 120.07122 * 339.30056 * 20 19 18 22 22 C 1.38091 * 119.92746 * 179.97438 * 21 20 19 23 23 C 1.38302 * 120.06875 * 359.97438 * 22 21 20 24 24 C 1.38256 * 120.15120 * 0.02562 * 23 22 21 25 25 C 1.38133 * 120.07385 * 359.97438 * 24 23 22 26 26 C 1.50697 * 120.03773 * 179.97438 * 25 24 23 27 27 N 1.32137 * 119.90792 * 89.99754 * 13 12 3 28 28 H 1.08998 * 109.47103 * 299.99991 * 1 2 3 29 29 H 1.08998 * 109.46869 * 59.99870 * 1 2 3 30 30 H 1.08999 * 109.47369 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46859 * 240.00102 * 2 1 3 32 32 H 1.09001 * 109.47362 * 120.00225 * 2 1 3 33 33 H 0.97000 * 120.00458 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47275 * 150.00132 * 12 3 2 35 35 H 1.09002 * 109.47091 * 29.99480 * 12 3 2 36 36 H 0.96996 * 120.00528 * 0.02562 * 16 15 14 37 37 H 0.96997 * 119.99306 * 179.97438 * 16 15 14 38 38 H 0.97010 * 119.99430 * 173.67853 * 19 18 17 39 39 H 1.08001 * 120.03977 * 359.95350 * 21 20 19 40 40 H 1.08001 * 119.95896 * 179.72750 * 22 21 20 41 41 H 1.08000 * 119.92128 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.96699 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.47358 * 270.01986 * 26 25 24 44 44 H 1.08998 * 109.47362 * 30.02474 * 26 25 24 45 45 H 1.09006 * 109.46585 * 150.02598 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1707 2.0535 -1.1832 5 1 1.4508 1.9196 -1.9770 6 6 3.2505 2.9072 -1.3623 7 7 4.3137 2.7936 -0.5948 8 14 3.1948 4.2174 -2.6926 9 1 2.0525 5.1319 -2.4392 10 1 4.4615 4.9924 -2.6777 11 1 3.0256 3.5699 -4.0183 12 6 2.3438 2.0431 1.2658 13 6 1.1189 2.7426 1.7963 14 7 0.8776 3.9969 1.4571 15 6 -0.2030 4.6183 1.9241 16 7 -0.4539 5.9282 1.5698 17 7 -1.0420 3.9742 2.7281 18 6 -0.7933 2.7150 3.0707 19 7 -1.6602 2.0427 3.9101 20 6 -2.7267 2.7238 4.5051 21 6 -2.6910 4.1077 4.6206 22 6 -3.7461 4.7774 5.2082 23 6 -4.8376 4.0718 5.6809 24 6 -4.8763 2.6944 5.5675 25 6 -3.8242 2.0184 4.9808 26 6 -3.8670 0.5170 4.8582 27 7 0.2894 2.1003 2.5996 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 5.0681 3.3904 -0.7197 34 1 3.1362 2.7731 1.1009 35 1 2.6794 1.2995 1.9888 36 1 0.1572 6.3967 0.9798 37 1 -1.2417 6.3802 1.9102 38 1 -1.5291 1.0979 4.0868 39 1 -1.8389 4.6592 4.2515 40 1 -3.7169 5.8529 5.3022 41 1 -5.6616 4.5980 6.1397 42 1 -5.7299 2.1464 5.9381 43 1 -3.4226 0.0671 5.7460 44 1 -4.9023 0.1894 4.7643 45 1 -3.3068 0.2086 3.9754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103470913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:22 Heat of formation + Delta-G solvation = 120.375500 kcal Electronic energy + Delta-G solvation = -28198.375462 eV Core-core repulsion = 24444.920545 eV Total energy + Delta-G solvation = -3753.454917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52989 -40.57041 -38.04381 -37.45732 -36.10013 -34.21258 -33.82725 -33.06259 -32.57138 -31.05827 -30.30180 -28.57116 -27.65743 -25.79841 -25.17091 -23.85874 -22.78967 -22.21546 -21.99842 -20.08368 -19.30961 -18.57682 -18.04430 -17.31971 -16.88326 -16.87109 -16.56401 -16.42642 -15.69738 -15.56839 -15.40706 -15.13799 -15.04175 -14.78762 -14.57489 -14.19835 -13.87367 -13.68796 -13.48170 -13.20180 -13.18160 -12.95271 -12.81467 -12.60870 -12.53310 -12.24527 -12.17757 -12.06497 -11.94376 -11.87261 -11.41259 -10.83212 -10.53332 -10.46293 -10.21880 -9.83186 -9.55743 -8.72683 -8.62601 -7.85854 -5.49079 0.03526 0.29625 0.54213 0.84158 1.46739 1.50687 1.55253 1.57010 2.20044 2.51360 2.86696 2.98094 3.10145 3.33050 3.56776 3.78697 3.96770 4.02199 4.06278 4.30838 4.41445 4.45750 4.55818 4.70460 4.73634 4.76996 4.79808 4.86424 4.89396 5.03056 5.05401 5.22515 5.24451 5.28619 5.39084 5.48755 5.52285 5.53439 5.63962 5.67400 5.69522 5.77986 5.90247 6.20191 6.25486 6.43009 6.55173 6.78321 7.12216 7.68941 7.78484 8.32160 9.12558 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.003618 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.970439 B = 7737.072139 C = 8791.014246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 N -0.577 5.577 4 C -0.272 4.272 5 H 0.044 0.956 6 C -0.011 4.011 7 N -0.905 5.905 8 Si 0.955 3.045 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.278 1.278 12 C 0.209 3.791 13 C 0.420 3.580 14 N -0.635 5.635 15 C 0.600 3.400 16 N -0.790 5.790 17 N -0.642 5.642 18 C 0.598 3.402 19 N -0.616 5.616 20 C 0.144 3.856 21 C -0.152 4.152 22 C -0.111 4.111 23 C -0.143 4.143 24 C -0.102 4.102 25 C -0.130 4.130 26 C -0.113 4.113 27 N -0.630 5.630 28 H 0.041 0.959 29 H 0.021 0.979 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.422 0.578 37 H 0.425 0.575 38 H 0.428 0.572 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.187 1.715 13.274 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 N -0.297 5.297 4 C -0.402 4.402 5 H 0.062 0.938 6 C -0.210 4.210 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.209 1.209 10 H -0.212 1.212 11 H -0.204 1.204 12 C 0.080 3.920 13 C 0.141 3.859 14 N -0.369 5.369 15 C 0.233 3.767 16 N -0.341 5.341 17 N -0.383 5.383 18 C 0.233 3.767 19 N -0.246 5.246 20 C 0.048 3.952 21 C -0.174 4.174 22 C -0.130 4.130 23 C -0.162 4.162 24 C -0.120 4.120 25 C -0.133 4.133 26 C -0.170 4.170 27 N -0.365 5.365 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.255 0.745 37 H 0.258 0.742 38 H 0.269 0.731 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.011 1.828 13.225 21.624 hybrid contribution 0.218 0.861 -0.959 1.307 sum -16.793 2.689 12.266 20.969 Atomic orbital electron populations 1.22148 0.98618 1.00669 0.99740 1.20990 0.92655 0.85020 0.99531 1.43764 1.75934 1.09173 1.00873 1.18935 1.04355 1.23731 0.93166 0.93827 1.25694 0.93743 1.01873 0.99710 1.69998 1.04430 1.38206 1.42087 0.85566 0.76708 0.79912 0.79489 1.20932 1.21216 1.20379 1.19777 0.89464 0.96236 0.86525 1.24978 0.94432 0.84866 0.81608 1.68628 1.22910 1.13391 1.32005 1.19722 0.84604 0.88309 0.84101 1.41556 1.31102 1.07423 1.54021 1.68267 1.34335 1.10425 1.25248 1.19392 0.86111 0.85543 0.85703 1.41486 1.25617 1.12392 1.45063 1.17848 0.87673 0.92393 0.97279 1.21784 1.01615 0.93162 1.00792 1.21259 0.93377 1.00710 0.97634 1.21417 0.99094 0.94429 1.01285 1.21126 0.97818 0.94604 0.98475 1.19841 0.92983 0.97312 1.03200 1.20760 1.04130 0.89808 1.02297 1.68524 1.06850 1.39849 1.21239 0.93958 0.95950 0.91228 0.93794 0.92789 0.93459 0.88749 0.91939 0.74518 0.74193 0.73092 0.84099 0.84451 0.83648 0.83238 0.89879 0.89438 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.93 10.22 71.98 0.74 -5.20 16 2 C 0.14 6.17 6.43 86.38 0.56 6.72 16 3 N -0.58 -29.23 2.41 -706.33 -1.70 -30.94 16 4 C -0.27 -15.07 9.47 84.04 0.80 -14.28 16 5 H 0.04 2.49 7.90 -2.91 -0.02 2.47 16 6 C -0.01 -0.61 4.99 84.86 0.42 -0.19 16 7 N -0.90 -51.51 11.40 21.65 0.25 -51.26 16 8 Si 0.96 44.90 29.60 68.60 2.03 46.93 16 9 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.21 10.26 5.81 85.63 0.50 10.76 16 13 C 0.42 19.17 7.14 138.54 0.99 20.16 16 14 N -0.64 -28.61 10.46 -190.35 -1.99 -30.60 16 15 C 0.60 22.57 8.76 261.25 2.29 24.86 16 16 N -0.79 -21.57 9.05 -59.46 -0.54 -22.11 16 17 N -0.64 -23.01 6.54 -200.47 -1.31 -24.32 16 18 C 0.60 21.98 8.30 261.18 2.17 24.14 16 19 N -0.62 -18.08 5.19 -190.32 -0.99 -19.07 16 20 C 0.14 3.84 6.48 38.18 0.25 4.09 16 21 C -0.15 -4.07 8.70 22.40 0.19 -3.87 16 22 C -0.11 -2.30 10.04 22.25 0.22 -2.08 16 23 C -0.14 -2.46 10.04 22.29 0.22 -2.24 16 24 C -0.10 -1.76 9.70 22.25 0.22 -1.54 16 25 C -0.13 -2.72 5.90 -19.74 -0.12 -2.84 16 26 C -0.11 -1.80 9.45 71.23 0.67 -1.12 16 27 N -0.63 -25.75 9.13 -190.24 -1.74 -27.49 16 28 H 0.04 1.72 6.61 -2.39 -0.02 1.70 16 29 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.04 1.91 8.07 -2.38 -0.02 1.89 16 32 H 0.05 2.15 7.85 -2.39 -0.02 2.13 16 33 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.10 5.22 5.49 -2.39 -0.01 5.21 16 35 H 0.06 2.89 7.87 -2.39 -0.02 2.87 16 36 H 0.42 10.80 8.95 -92.71 -0.83 9.97 16 37 H 0.42 8.79 8.95 -92.71 -0.83 7.96 16 38 H 0.43 11.02 7.35 -92.70 -0.68 10.34 16 39 H 0.14 4.27 5.27 -2.91 -0.02 4.26 16 40 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 42 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 45 H 0.05 0.98 6.91 -2.38 -0.02 0.96 16 Total: -1.00 -67.63 372.75 2.85 -64.78 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -1.28 Total: 36.69 kcal Atomic # 6 Polarization: 47.26 SS G_CDS: 10.12 Total: 57.38 kcal Atomic # 7 Polarization: -197.76 SS G_CDS: -8.02 Total: -205.78 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.63 2.85 -64.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103470913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.159 kcal (2) G-P(sol) polarization free energy of solvation -67.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds