Wall clock time and date at job start Tue Mar 31 2020 15:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47392 * 2 1 4 4 C 1.50700 * 109.46912 * 240.00178 * 2 1 3 5 5 N 1.32172 * 119.91571 * 285.18460 * 4 2 1 6 6 C 1.33096 * 120.08836 * 180.02562 * 5 4 2 7 7 N 1.37995 * 120.04203 * 179.97438 * 6 5 4 8 8 N 1.32867 * 119.90973 * 0.02562 * 6 5 4 9 9 C 1.32840 * 119.82694 * 359.97438 * 8 6 5 10 10 N 1.38142 * 120.04006 * 180.02562 * 9 8 6 11 11 C 1.39833 * 120.00208 * 354.34617 * 10 9 8 12 12 C 1.38895 * 120.06992 * 142.45913 * 11 10 9 13 13 C 1.38109 * 119.92616 * 179.97438 * 12 11 10 14 14 C 1.38294 * 120.06848 * 359.97438 * 13 12 11 15 15 C 1.38284 * 120.14737 * 0.25283 * 14 13 12 16 16 C 1.38106 * 120.07341 * 359.49422 * 15 14 13 17 17 N 1.32136 * 119.91095 * 105.46878 * 4 2 1 18 18 N 1.46903 * 109.47080 * 120.00444 * 2 1 3 19 19 C 1.46900 * 110.99942 * 302.50423 * 18 2 1 20 20 C 1.46903 * 111.00032 * 178.55329 * 18 2 1 21 21 C 1.50695 * 109.47034 * 190.00235 * 20 18 2 22 22 H 1.08000 * 120.00180 * 359.97438 * 21 20 18 23 23 C 1.37875 * 119.99855 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00167 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46799 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47211 * 119.99554 * 25 23 21 28 28 H 1.48498 * 109.47153 * 240.00032 * 25 23 21 29 29 H 1.09009 * 109.47286 * 59.99296 * 1 2 3 30 30 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47315 * 300.00170 * 1 2 3 32 32 H 0.97002 * 119.99598 * 180.02562 * 7 6 5 33 33 H 0.96997 * 119.99712 * 0.02856 * 7 6 5 34 34 H 0.96996 * 119.99503 * 174.34289 * 10 9 8 35 35 H 1.07997 * 120.04067 * 359.95818 * 12 11 10 36 36 H 1.07994 * 119.96820 * 180.02562 * 13 12 11 37 37 H 1.07999 * 119.92025 * 179.97438 * 14 13 12 38 38 H 1.08003 * 119.96294 * 179.74333 * 15 14 13 39 39 H 1.08001 * 120.04001 * 180.23214 * 16 15 14 40 40 H 1.09001 * 109.47060 * 66.49824 * 19 18 2 41 41 H 1.08998 * 109.46790 * 186.50188 * 19 18 2 42 42 H 1.09001 * 109.46910 * 306.50147 * 19 18 2 43 43 H 1.09004 * 109.47077 * 310.00248 * 20 18 2 44 44 H 1.08996 * 109.47066 * 69.99627 * 20 18 2 45 45 H 0.97005 * 119.99893 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 7 1.9690 -2.0286 -1.3026 6 6 2.4121 -2.6596 -2.3875 7 7 2.3461 -4.0360 -2.4615 8 7 2.9189 -1.9625 -3.3987 9 6 2.9808 -0.6377 -3.3226 10 7 3.5064 0.0915 -4.3715 11 6 4.0813 -0.5677 -5.4625 12 6 3.9089 -0.0684 -6.7471 13 6 4.4785 -0.7216 -7.8224 14 6 5.2202 -1.8713 -7.6211 15 6 5.3899 -2.3736 -6.3439 16 6 4.8273 -1.7224 -5.2638 17 7 2.5398 -0.0141 -2.2322 18 7 2.0196 -0.6926 1.1994 19 6 1.5003 -0.0620 2.4203 20 6 3.4877 -0.7423 1.2162 21 6 3.9466 -1.6624 2.3179 22 1 3.2204 -2.1601 2.9433 23 6 5.2937 -1.8679 2.5280 24 7 6.1780 -1.2614 1.7667 25 14 5.8626 -3.0079 3.8941 26 1 4.6800 -3.5618 4.6012 27 1 6.6575 -4.1192 3.3125 28 1 6.7024 -2.2485 4.8549 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.6696 -4.4952 -3.2524 33 1 1.9763 -4.5442 -1.7227 34 1 3.4766 1.0608 -4.3513 35 1 3.3298 0.8294 -6.9050 36 1 4.3452 -0.3338 -8.8215 37 1 5.6642 -2.3804 -8.4637 38 1 5.9663 -3.2740 -6.1906 39 1 4.9633 -2.1131 -4.2661 40 1 0.4205 -0.2026 2.4708 41 1 1.9675 -0.5195 3.2924 42 1 1.7274 1.0039 2.4036 43 1 3.8496 -1.1143 0.2577 44 1 3.8831 0.2584 1.3901 45 1 7.1258 -1.4063 1.9143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177190271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:33 Heat of formation + Delta-G solvation = 121.963320 kcal Electronic energy + Delta-G solvation = -27879.621917 eV Core-core repulsion = 24126.235853 eV Total energy + Delta-G solvation = -3753.386064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29683 -39.42372 -37.36232 -36.31563 -34.87615 -32.93006 -32.29197 -31.36820 -30.91650 -30.22119 -29.10692 -27.12752 -25.71904 -24.14111 -23.64324 -22.46359 -22.12593 -21.53373 -19.92688 -18.88037 -17.88883 -17.13810 -16.40954 -16.24163 -15.92762 -15.57988 -15.29865 -14.97013 -14.62484 -14.37695 -14.25586 -14.00768 -13.71350 -13.48337 -13.30679 -13.03644 -12.75022 -12.13614 -11.96670 -11.91496 -11.73807 -11.62555 -11.32368 -11.14421 -11.10203 -10.83795 -10.79347 -10.56896 -10.27941 -9.83927 -9.56391 -9.21872 -9.17079 -9.05231 -8.86289 -8.62740 -8.41088 -7.88296 -7.21189 -5.99449 -4.00137 1.13750 1.38961 1.56664 1.87465 2.67450 3.31746 3.37576 3.38978 3.44092 3.79155 4.11459 4.37993 4.44097 4.60070 4.86002 4.91313 5.05133 5.12150 5.16275 5.36133 5.37533 5.49785 5.57238 5.67514 5.74332 5.93978 5.98847 6.09364 6.22427 6.25149 6.31711 6.33026 6.40544 6.51842 6.53664 6.69576 6.76686 6.79872 6.90746 7.13585 7.28855 7.34324 7.42300 7.65371 7.82511 7.87991 8.09451 8.21176 8.55337 8.94984 9.07350 9.63132 11.11505 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.003640 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.615047 B = 7689.874553 C = 8858.984920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.146 3.854 3 H 0.060 0.940 4 C 0.455 3.545 5 N -0.583 5.583 6 C 0.622 3.378 7 N -0.807 5.807 8 N -0.646 5.646 9 C 0.622 3.378 10 N -0.635 5.635 11 C 0.171 3.829 12 C -0.149 4.149 13 C -0.104 4.104 14 C -0.142 4.142 15 C -0.101 4.101 16 C -0.107 4.107 17 N -0.631 5.631 18 N -0.520 5.520 19 C 0.036 3.964 20 C 0.198 3.802 21 C -0.499 4.499 22 H 0.065 0.935 23 C 0.053 3.947 24 N -0.899 5.899 25 Si 0.897 3.103 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.412 0.588 33 H 0.419 0.581 34 H 0.424 0.576 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.011 0.989 43 H 0.023 0.977 44 H -0.011 1.011 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 0.251 -16.429 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.035 3.965 3 H 0.078 0.922 4 C 0.177 3.823 5 N -0.314 5.314 6 C 0.255 3.745 7 N -0.356 5.356 8 N -0.385 5.385 9 C 0.256 3.744 10 N -0.266 5.266 11 C 0.076 3.924 12 C -0.170 4.170 13 C -0.122 4.122 14 C -0.161 4.161 15 C -0.120 4.120 16 C -0.128 4.128 17 N -0.364 5.364 18 N -0.245 5.245 19 C -0.113 4.113 20 C 0.073 3.927 21 C -0.538 4.538 22 H 0.084 0.916 23 C -0.147 4.147 24 N -0.539 5.539 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.212 1.212 28 H -0.212 1.212 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.242 0.758 33 H 0.251 0.749 34 H 0.263 0.737 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.030 0.970 43 H 0.041 0.959 44 H 0.006 0.994 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.260 -0.318 -16.482 18.013 hybrid contribution 0.971 0.196 0.608 1.162 sum -6.289 -0.122 -15.874 17.075 Atomic orbital electron populations 1.21807 0.93062 1.03069 1.01475 1.20306 0.95320 0.94339 0.86574 0.92249 1.22770 0.82988 0.85295 0.91221 1.68521 1.27568 1.11038 1.24313 1.19175 0.83798 0.87541 0.84012 1.41599 1.68918 1.01197 1.23887 1.67969 1.31082 1.06987 1.32487 1.18776 0.85273 0.84787 0.85569 1.41337 1.60483 1.08533 1.16236 1.17590 0.94385 0.94625 0.85827 1.20863 1.03123 1.02319 0.90732 1.20862 0.97655 0.95622 0.98092 1.21082 1.00798 0.97108 0.97078 1.21015 0.99206 0.99574 0.92221 1.21164 0.95833 0.95605 1.00202 1.68299 1.23862 1.41561 1.02637 1.62142 1.13468 1.50175 0.98760 1.22294 0.98876 0.95884 0.94197 1.19692 0.79765 0.95506 0.97754 1.21153 0.91338 1.26215 1.15046 0.91642 1.24997 0.96761 0.96328 0.96657 1.69991 1.01262 1.43455 1.39200 0.86458 0.78677 0.80549 0.81838 1.19558 1.21173 1.21153 0.92992 0.91116 0.91380 0.75772 0.74897 0.73690 0.85921 0.85975 0.86280 0.85938 0.85052 0.92971 0.90162 0.97005 0.95890 0.99373 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.86 37.15 0.33 -1.74 16 2 C 0.15 2.82 2.49 -68.87 -0.17 2.65 16 3 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 4 C 0.45 9.29 4.94 -156.58 -0.77 8.52 16 5 N -0.58 -11.85 10.11 -11.52 -0.12 -11.97 16 6 C 0.62 11.26 8.76 -322.14 -2.82 8.44 16 7 N -0.81 -10.86 9.05 29.85 0.27 -10.59 16 8 N -0.65 -11.45 7.61 -14.72 -0.11 -11.56 16 9 C 0.62 11.20 8.18 -321.93 -2.63 8.57 16 10 N -0.63 -9.21 5.46 -11.51 -0.06 -9.27 16 11 C 0.17 2.31 6.20 -83.72 -0.52 1.79 16 12 C -0.15 -1.62 9.97 -39.39 -0.39 -2.02 16 13 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 14 C -0.14 -1.40 10.04 -39.54 -0.40 -1.80 16 15 C -0.10 -1.16 10.04 -39.61 -0.40 -1.56 16 16 C -0.11 -1.50 8.57 -39.39 -0.34 -1.84 16 17 N -0.63 -12.33 10.45 -11.48 -0.12 -12.45 16 18 N -0.52 -11.50 4.46 -237.73 -1.06 -12.56 16 19 C 0.04 0.69 8.84 60.06 0.53 1.22 16 20 C 0.20 5.35 4.55 -4.98 -0.02 5.33 16 21 C -0.50 -14.27 8.36 -34.44 -0.29 -14.56 16 22 H 0.07 1.85 7.18 -52.49 -0.38 1.47 16 23 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 24 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 25 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.92 6.51 -51.93 -0.34 0.58 16 32 H 0.41 4.44 8.95 -40.82 -0.37 4.08 16 33 H 0.42 5.12 8.95 -40.82 -0.37 4.75 16 34 H 0.42 5.21 8.95 -40.82 -0.37 4.85 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.13 2.15 6.63 -52.49 -0.35 1.80 16 40 H 0.05 0.84 6.64 -51.93 -0.34 0.49 16 41 H 0.08 1.66 6.64 -51.93 -0.34 1.31 16 42 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 43 H 0.02 0.69 6.60 -51.93 -0.34 0.35 16 44 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -34.37 374.83 -14.35 -48.72 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.13 Total: 10.79 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: -8.39 Total: 13.05 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -0.46 Total: -95.19 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.37 -14.35 -48.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177190271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.686 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds