Wall clock time and date at job start Tue Mar 31 2020 15:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99720 * 2 1 4 4 C 1.50695 * 109.47155 * 270.00010 * 3 2 1 5 5 H 1.07999 * 119.99981 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00359 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99598 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00282 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47179 * 59.99763 * 8 6 4 10 10 H 1.48495 * 109.46941 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47032 * 299.99913 * 8 6 4 12 12 C 1.39674 * 120.00521 * 179.97438 * 2 1 3 13 13 C 1.38905 * 120.07061 * 0.02562 * 12 2 1 14 14 C 1.38108 * 119.92517 * 179.97438 * 13 12 2 15 15 C 1.38290 * 120.06955 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.91952 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.46656 * 90.00495 * 16 15 14 18 18 C 1.46906 * 110.99573 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47020 * 179.97438 * 18 17 16 20 20 O 1.42906 * 109.47024 * 64.99964 * 19 18 17 21 21 C 1.42895 * 114.00010 * 179.97438 * 20 19 18 22 22 C 1.53001 * 109.47394 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.46937 * 300.00016 * 22 21 20 24 24 F 1.39899 * 109.47118 * 60.00064 * 22 21 20 25 25 C 1.38280 * 120.15093 * 0.27860 * 15 14 13 26 26 C 1.38103 * 120.07444 * 359.45001 * 25 15 14 27 27 H 1.08996 * 109.47702 * 269.99752 * 1 2 3 28 28 H 1.08997 * 109.47558 * 30.00393 * 1 2 3 29 29 H 1.09006 * 109.46777 * 150.00374 * 1 2 3 30 30 H 1.09004 * 109.46781 * 29.99635 * 3 2 1 31 31 H 1.08997 * 109.47198 * 149.99390 * 3 2 1 32 32 H 0.97003 * 119.99619 * 180.02562 * 7 6 4 33 33 H 1.08006 * 120.04526 * 359.94946 * 13 12 2 34 34 H 1.08001 * 119.96705 * 179.97438 * 14 13 12 35 35 H 1.08990 * 109.47142 * 330.00480 * 16 15 14 36 36 H 1.09004 * 109.46726 * 210.00378 * 16 15 14 37 37 H 1.00896 * 111.00219 * 303.95295 * 17 16 15 38 38 H 1.09002 * 109.46991 * 299.99841 * 18 17 16 39 39 H 1.09000 * 109.47202 * 60.00133 * 18 17 16 40 40 H 1.08999 * 109.47322 * 185.00065 * 19 18 17 41 41 H 1.09001 * 109.47293 * 305.00104 * 19 18 17 42 42 H 1.09005 * 109.47322 * 300.00292 * 21 20 19 43 43 H 1.09002 * 109.47410 * 59.99743 * 21 20 19 44 44 H 1.09004 * 109.47316 * 180.02562 * 22 21 20 45 45 H 1.07998 * 119.95898 * 179.69933 * 25 15 14 46 46 H 1.08003 * 120.03747 * 180.27137 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0958 -2.2416 6 6 3.1267 2.8776 -1.6728 7 7 3.5540 3.6177 -0.6731 8 14 3.4387 3.4164 -3.4339 9 1 2.1414 3.5942 -4.1343 10 1 4.1810 4.7025 -3.4339 11 1 4.2411 2.3812 -4.1336 12 6 2.1634 -1.2095 0.0005 13 6 1.4705 -2.4134 0.0005 14 6 2.1642 -3.6077 0.0005 15 6 3.5471 -3.6057 0.0000 16 6 4.3006 -4.9109 -0.0006 17 7 4.5450 -5.3345 -1.3858 18 6 5.2798 -6.6059 -1.4256 19 6 5.5144 -7.0140 -2.8813 20 8 6.3735 -6.0610 -3.5107 21 6 6.6582 -6.3508 -4.8806 22 6 7.5816 -5.2714 -5.4491 23 9 6.9535 -4.0247 -5.3569 24 9 8.7752 -5.2473 -4.7197 25 6 4.2399 -2.4090 0.0053 26 6 3.5525 -1.2113 -0.0004 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6082 2.0284 0.5138 31 1 3.1498 1.1386 0.5139 32 1 4.0308 4.4436 -0.8504 33 1 0.3904 -2.4157 0.0009 34 1 1.6261 -4.5441 0.0010 35 1 3.7118 -5.6706 0.5132 36 1 5.2532 -4.7806 0.5130 37 1 3.6804 -5.3998 -1.9018 38 1 6.2392 -6.4870 -0.9220 39 1 4.6981 -7.3777 -0.9215 40 1 5.9802 -7.9990 -2.9120 41 1 4.5605 -7.0466 -3.4078 42 1 7.1479 -7.3220 -4.9524 43 1 5.7282 -6.3701 -5.4489 44 1 7.7984 -5.4922 -6.4943 45 1 5.3199 -2.4111 0.0098 46 1 4.0943 -0.2769 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190898620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:32 Heat of formation + Delta-G solvation = -114.526937 kcal Electronic energy + Delta-G solvation = -27352.939350 eV Core-core repulsion = 23106.316361 eV Total energy + Delta-G solvation = -4246.622989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.98488 -47.02231 -39.02355 -38.37320 -36.48639 -34.99758 -32.67826 -31.31126 -30.37823 -29.83665 -27.99502 -27.72267 -25.40545 -23.86912 -23.14470 -22.25229 -21.95051 -21.46223 -19.51681 -18.08729 -17.59296 -16.90495 -16.68459 -16.45576 -16.33886 -16.06479 -15.45010 -15.09044 -14.57070 -14.36352 -14.24687 -13.93953 -13.82510 -13.64770 -13.52852 -13.37179 -13.00104 -12.90138 -12.80725 -12.55906 -12.20262 -12.09847 -11.80969 -11.71363 -11.36332 -11.31878 -11.18938 -11.08737 -10.90362 -10.62421 -10.59841 -10.20665 -9.99897 -9.85122 -9.70422 -8.80397 -8.44976 -8.30140 -8.19558 -6.41657 -5.96686 -4.12153 2.17619 2.27485 3.07214 3.33524 3.37497 3.42029 3.69047 3.97441 4.15065 4.22132 4.24261 4.46792 4.60655 4.70735 4.86351 4.90158 4.94108 5.11987 5.16928 5.26365 5.26929 5.37749 5.40550 5.61261 5.65151 5.68721 5.84127 5.89788 6.07236 6.13301 6.31729 6.45188 6.50124 6.69953 6.75149 6.97138 7.04328 7.11702 7.24093 7.32577 7.42973 7.48209 7.66860 7.86229 8.20568 8.31818 8.53804 8.96556 9.54707 11.00816 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.003095 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.903933 B = 9044.767002 C =11454.844856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.616 5.616 3 C 0.249 3.751 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.242 3.758 13 C -0.223 4.223 14 C -0.069 4.069 15 C -0.173 4.173 16 C 0.117 3.883 17 N -0.676 5.676 18 C 0.059 3.941 19 C 0.066 3.934 20 O -0.355 6.355 21 C 0.008 3.992 22 C 0.271 3.729 23 F -0.194 7.194 24 F -0.201 7.201 25 C -0.048 4.048 26 C -0.188 4.188 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.340 0.660 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 -23.889 -4.974 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.322 5.322 3 C 0.130 3.870 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.135 3.865 13 C -0.246 4.246 14 C -0.088 4.088 15 C -0.175 4.175 16 C -0.011 4.011 17 N -0.308 5.308 18 C -0.070 4.070 19 C -0.011 4.011 20 O -0.274 6.274 21 C -0.071 4.071 22 C 0.218 3.782 23 F -0.175 7.175 24 F -0.183 7.183 25 C -0.068 4.068 26 C -0.210 4.210 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.158 0.842 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.425 -22.909 -4.865 23.669 hybrid contribution -0.637 -0.326 -0.936 1.179 sum 2.788 -23.235 -5.801 24.110 Atomic orbital electron populations 1.21460 0.81585 1.01874 0.99609 1.47100 1.04335 1.04654 1.76099 1.19278 0.92075 0.78714 0.96970 1.21547 1.36473 1.06406 0.92653 0.92300 1.24952 0.95351 0.96281 0.97405 1.69923 1.38337 1.14394 1.30825 0.86584 0.78429 0.77892 0.84762 1.20284 1.21188 1.19950 1.17952 0.91524 0.85947 0.91106 1.20499 0.98870 0.91407 1.13838 1.20484 0.93290 0.96431 0.98631 1.19160 0.93050 0.93903 1.11431 1.20649 0.98643 0.93376 0.88437 1.60454 1.26706 1.29499 1.14111 1.21971 0.99774 0.91076 0.94204 1.22595 0.93320 0.91193 0.93962 1.88151 1.68143 1.49521 1.21585 1.23638 0.99521 0.97627 0.86270 1.21961 0.78880 0.81491 0.95911 1.93067 1.82416 1.44611 1.97395 1.93006 1.47965 1.96640 1.80640 1.20659 0.98844 0.91310 0.95975 1.20907 0.92644 0.98862 1.08594 0.94683 0.91483 0.92750 0.95251 0.94605 0.92613 0.87013 0.87845 0.95587 0.90973 0.84214 0.90052 0.93940 0.92886 0.93164 0.90751 0.90442 0.86302 0.86963 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 10.19 59.84 0.61 2.39 16 2 N -0.62 -13.58 2.99 -181.01 -0.54 -14.12 16 3 C 0.25 6.42 4.91 -5.19 -0.03 6.39 16 4 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.24 5.06 6.55 -83.79 -0.55 4.51 16 13 C -0.22 -3.98 9.21 -39.38 -0.36 -4.34 16 14 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 15 C -0.17 -2.78 5.39 -104.58 -0.56 -3.35 16 16 C 0.12 1.52 5.81 -4.97 -0.03 1.49 16 17 N -0.68 -8.54 6.44 -115.05 -0.74 -9.28 16 18 C 0.06 0.57 6.07 -3.82 -0.02 0.55 16 19 C 0.07 0.57 6.22 37.16 0.23 0.80 16 20 O -0.36 -4.17 10.18 -35.23 -0.36 -4.53 16 21 C 0.01 0.06 6.16 37.16 0.23 0.29 16 22 C 0.27 2.45 5.63 37.16 0.21 2.66 16 23 F -0.19 -2.62 17.28 2.25 0.04 -2.59 16 24 F -0.20 -2.38 17.28 2.25 0.04 -2.35 16 25 C -0.05 -0.89 9.69 -39.62 -0.38 -1.28 16 26 C -0.19 -3.99 9.21 -39.38 -0.36 -4.35 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 29 H 0.05 0.87 6.20 -51.93 -0.32 0.54 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.04 0.98 6.20 -51.93 -0.32 0.65 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.11 1.79 6.14 -52.48 -0.32 1.47 16 34 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.34 4.13 8.72 -39.29 -0.34 3.79 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 46 H 0.13 3.08 6.14 -52.48 -0.32 2.76 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -33.11 390.97 -8.86 -41.98 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.08 Total: 2.86 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.83 Total: -9.29 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.55 Total: -48.89 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.36 Total: -4.53 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.08 Total: -4.93 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.11 -8.86 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190898620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.552 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds