Wall clock time and date at job start Tue Mar 31 2020 15:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99945 * 2 1 4 4 C 1.50698 * 109.46919 * 270.00570 * 3 2 1 5 5 H 1.08001 * 120.00554 * 359.97438 * 4 3 2 6 6 C 1.37886 * 119.99752 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00058 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99737 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47411 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47085 * 120.00069 * 8 6 4 11 11 H 1.48506 * 109.47263 * 239.99731 * 8 6 4 12 12 C 1.39676 * 119.99926 * 180.02562 * 2 1 3 13 13 C 1.38909 * 120.06843 * 179.72116 * 12 2 1 14 14 C 1.38116 * 119.91802 * 179.76364 * 13 12 2 15 15 C 1.38276 * 120.07494 * 0.51242 * 14 13 12 16 16 C 1.50702 * 119.92433 * 179.71755 * 15 14 13 17 17 N 1.46901 * 109.47398 * 264.65002 * 16 15 14 18 18 C 1.46898 * 110.99827 * 75.39470 * 17 16 15 19 19 C 1.52999 * 109.47027 * 189.99891 * 18 17 16 20 20 O 1.42904 * 109.46785 * 65.00116 * 19 18 17 21 21 C 1.46903 * 110.99998 * 199.35236 * 17 16 15 22 22 C 1.52995 * 109.46953 * 77.30108 * 21 17 16 23 23 F 1.39902 * 109.47328 * 294.29309 * 22 21 17 24 24 F 1.39904 * 109.47384 * 54.29587 * 22 21 17 25 25 C 1.38287 * 120.15131 * 359.73980 * 15 14 13 26 26 C 1.38098 * 120.07444 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47255 * 90.00016 * 1 2 3 28 28 H 1.09010 * 109.46607 * 210.00078 * 1 2 3 29 29 H 1.08997 * 109.46753 * 329.99436 * 1 2 3 30 30 H 1.09004 * 109.46905 * 29.99772 * 3 2 1 31 31 H 1.08994 * 109.47413 * 150.00087 * 3 2 1 32 32 H 0.97001 * 119.99758 * 179.97438 * 7 6 4 33 33 H 1.08000 * 120.04384 * 0.02562 * 13 12 2 34 34 H 1.08002 * 119.95967 * 180.24736 * 14 13 12 35 35 H 1.09006 * 109.46949 * 24.65357 * 16 15 14 36 36 H 1.09002 * 109.47093 * 144.64973 * 16 15 14 37 37 H 1.08991 * 109.47261 * 310.00245 * 18 17 16 38 38 H 1.09006 * 109.46593 * 70.00410 * 18 17 16 39 39 H 1.08998 * 109.47040 * 184.99971 * 19 18 17 40 40 H 1.09005 * 109.47420 * 305.00542 * 19 18 17 41 41 H 0.96705 * 113.99453 * 179.97438 * 20 19 18 42 42 H 1.08997 * 109.46866 * 197.29978 * 21 17 16 43 43 H 1.09000 * 109.46715 * 317.30095 * 21 17 16 44 44 H 1.09006 * 109.47194 * 174.28996 * 22 21 17 45 45 H 1.08005 * 119.96048 * 180.02562 * 25 15 14 46 46 H 1.08001 * 120.03976 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4386 3.4165 -3.4339 9 1 2.8614 2.4160 -4.3674 10 1 2.8015 4.7374 -3.6675 11 1 4.9012 3.5242 -3.6671 12 6 2.1634 -1.2096 -0.0005 13 6 3.5525 -1.2113 -0.0064 14 6 4.2399 -2.4092 -0.0020 15 6 3.5470 -3.6058 -0.0024 16 6 4.3005 -4.9110 -0.0040 17 7 4.4326 -5.3985 -1.3835 18 6 5.4517 -4.6354 -2.1162 19 6 5.3887 -4.9960 -3.6018 20 8 4.1362 -4.5704 -4.1425 21 6 4.7332 -6.8363 -1.4072 22 6 3.4547 -7.6292 -1.1286 23 9 3.0248 -7.3767 0.1785 24 9 2.4586 -7.2399 -2.0306 25 6 2.1641 -3.6077 -0.0019 26 6 1.4705 -2.4135 -0.0014 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 4.0316 4.4432 -0.8505 33 1 4.0943 -0.2771 -0.0101 34 1 5.3200 -2.4113 -0.0025 35 1 5.2914 -4.7589 0.4241 36 1 3.7567 -5.6452 0.5903 37 1 5.2651 -3.5686 -1.9931 38 1 6.4394 -4.8792 -1.7247 39 1 6.2010 -4.4982 -4.1313 40 1 5.4867 -6.0754 -3.7182 41 1 4.0268 -4.7668 -5.0831 42 1 5.1240 -7.1096 -2.3873 43 1 5.4762 -7.0647 -0.6430 44 1 3.6549 -8.6943 -1.2460 45 1 1.6260 -4.5441 -0.0018 46 1 0.3905 -2.4156 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193028212.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:35 Heat of formation + Delta-G solvation = -105.530018 kcal Electronic energy + Delta-G solvation = -28864.982705 eV Core-core repulsion = 24618.749852 eV Total energy + Delta-G solvation = -4246.232853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.93118 -46.91314 -39.15616 -38.00640 -36.21527 -35.22916 -32.67721 -30.81615 -30.45618 -30.15413 -27.94387 -27.69055 -25.42545 -23.96523 -23.22826 -22.26496 -21.37053 -20.73018 -19.47709 -17.68092 -17.51971 -17.37891 -16.60491 -16.51816 -16.36308 -15.59196 -15.23670 -14.90085 -14.66527 -14.23917 -13.91397 -13.85498 -13.71460 -13.51438 -13.26591 -13.07424 -12.92208 -12.75633 -12.75292 -12.48134 -12.43460 -12.08977 -11.70957 -11.60017 -11.37874 -11.20154 -11.11965 -10.84799 -10.73059 -10.63091 -10.44492 -10.19255 -9.92963 -9.78039 -9.65744 -8.72673 -8.46124 -8.33830 -8.11507 -6.37392 -5.95041 -4.11781 2.23720 2.34490 3.28408 3.36167 3.42842 3.59945 3.84980 4.13490 4.24237 4.26716 4.35851 4.46747 4.67806 4.79012 4.99750 5.07811 5.09309 5.24736 5.26157 5.33636 5.40392 5.51520 5.54646 5.69395 5.77129 5.83854 5.89696 5.99677 6.09570 6.22243 6.39249 6.48701 6.54119 6.77891 6.90904 6.95632 7.07466 7.17712 7.31120 7.36812 7.46258 7.72782 7.73727 7.86993 8.22212 8.35835 8.58608 8.98377 9.54785 11.00368 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.003383 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.950568 B = 8274.206818 C = 9278.066160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.617 5.617 3 C 0.250 3.750 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.241 3.759 13 C -0.188 4.188 14 C -0.069 4.069 15 C -0.161 4.161 16 C 0.092 3.908 17 N -0.515 5.515 18 C 0.051 3.949 19 C 0.082 3.918 20 O -0.548 6.548 21 C -0.006 4.006 22 C 0.271 3.729 23 F -0.204 7.204 24 F -0.191 7.191 25 C -0.044 4.044 26 C -0.221 4.221 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.035 0.965 32 H 0.262 0.738 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.035 0.965 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.370 0.630 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -22.954 -1.247 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.323 5.323 3 C 0.130 3.870 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.135 3.865 13 C -0.211 4.211 14 C -0.088 4.088 15 C -0.164 4.164 16 C -0.034 4.034 17 N -0.239 5.239 18 C -0.076 4.076 19 C 0.003 3.997 20 O -0.351 6.351 21 C -0.135 4.135 22 C 0.217 3.783 23 F -0.186 7.186 24 F -0.172 7.172 25 C -0.063 4.063 26 C -0.244 4.244 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.123 0.877 35 H 0.053 0.947 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.215 0.785 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.285 -22.260 -0.800 22.516 hybrid contribution 1.046 0.242 -1.280 1.670 sum 4.331 -22.018 -2.080 22.536 Atomic orbital electron populations 1.21445 0.81567 1.00896 1.00399 1.47055 1.04327 1.04601 1.76344 1.19278 0.92048 0.78775 0.96927 1.21649 1.35916 1.06244 0.92801 0.92180 1.24960 0.95511 0.96325 0.97340 1.69944 1.38620 1.14402 1.30644 0.86482 0.77959 0.78437 0.84861 1.19666 1.20986 1.20922 1.17918 0.91457 0.85911 0.91244 1.20799 0.92699 0.98518 1.09039 1.20617 0.98135 0.91802 0.98268 1.19022 0.93584 0.92899 1.10875 1.21275 0.98376 0.96026 0.87709 1.61950 1.46583 0.99838 1.15499 1.22234 0.92283 1.01117 0.92009 1.22192 0.86428 0.97048 0.94025 1.86750 1.36265 1.83959 1.28131 1.23292 0.95029 0.91474 1.03743 1.21907 0.85517 0.98829 0.72081 1.92891 1.91417 1.95539 1.38728 1.93029 1.63858 1.93167 1.67183 1.20444 0.93244 0.96435 0.96220 1.20553 0.98959 0.91412 1.13464 0.94160 0.92825 0.92170 0.95291 0.94718 0.92797 0.85274 0.87750 0.94707 0.88931 0.88402 0.93698 0.93628 0.94390 0.78483 0.88204 0.91949 0.87728 0.87460 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.89 10.23 59.85 0.61 2.50 16 2 N -0.62 -13.88 2.99 -181.00 -0.54 -14.43 16 3 C 0.25 6.46 4.95 -5.20 -0.03 6.43 16 4 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.90 -26.13 13.29 55.43 0.74 -25.40 16 8 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.24 5.20 6.55 -83.79 -0.55 4.65 16 13 C -0.19 -4.00 9.21 -39.38 -0.36 -4.36 16 14 C -0.07 -1.24 8.37 -39.61 -0.33 -1.57 16 15 C -0.16 -2.71 5.03 -104.59 -0.53 -3.24 16 16 C 0.09 1.25 4.91 -4.97 -0.02 1.22 16 17 N -0.51 -6.46 4.12 -236.07 -0.97 -7.43 16 18 C 0.05 0.61 5.17 -3.83 -0.02 0.59 16 19 C 0.08 0.85 7.13 37.16 0.26 1.11 16 20 O -0.55 -7.32 13.61 -35.23 -0.48 -7.80 16 21 C -0.01 -0.05 5.23 -3.82 -0.02 -0.07 16 22 C 0.27 2.48 5.59 37.16 0.21 2.69 16 23 F -0.20 -2.31 14.64 2.25 0.03 -2.28 16 24 F -0.19 -2.45 17.16 2.25 0.04 -2.41 16 25 C -0.04 -0.78 9.71 -39.61 -0.38 -1.17 16 26 C -0.22 -4.23 9.21 -39.38 -0.36 -4.59 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.86 6.20 -51.92 -0.32 0.54 16 29 H 0.06 1.06 7.89 -51.93 -0.41 0.65 16 30 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 31 H 0.03 0.94 6.21 -51.93 -0.32 0.62 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.13 3.00 6.15 -52.49 -0.32 2.67 16 34 H 0.10 1.65 7.98 -52.49 -0.42 1.23 16 35 H 0.03 0.43 7.91 -51.93 -0.41 0.02 16 36 H 0.09 1.22 5.19 -51.93 -0.27 0.95 16 37 H 0.10 1.46 6.28 -51.93 -0.33 1.13 16 38 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.04 0.31 6.08 -51.93 -0.32 0.00 16 41 H 0.37 3.18 9.12 45.56 0.42 3.60 16 42 H 0.10 0.70 5.80 -51.93 -0.30 0.40 16 43 H 0.06 0.44 7.98 -51.93 -0.41 0.03 16 44 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 46 H 0.11 1.96 6.14 -52.49 -0.32 1.63 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -33.57 376.34 -8.29 -41.85 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.81 Total: 4.81 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.94 Total: -9.37 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.78 Total: -47.25 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.48 Total: -7.80 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.07 Total: -4.69 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.57 -8.29 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193028212.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.676 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds