Wall clock time and date at job start Tue Mar 31 2020 14:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 C 1.52997 * 109.47086 * 239.99187 * 2 1 3 5 5 C 1.50699 * 109.46857 * 60.00366 * 4 2 1 6 6 H 1.08003 * 119.99963 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00204 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99565 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00144 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47092 * 60.00535 * 9 7 5 11 11 H 1.48506 * 109.47148 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47706 * 300.00561 * 9 7 5 13 13 C 1.53002 * 109.46800 * 119.99598 * 2 1 3 14 14 O 1.45206 * 109.47129 * 299.99943 * 13 2 1 15 15 C 1.34232 * 116.99878 * 180.02562 * 14 13 2 16 16 O 1.20825 * 120.00049 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99727 * 180.02562 * 15 14 13 18 18 H 1.08993 * 115.56517 * 34.25300 * 17 15 14 19 19 C 1.53134 * 117.51395 * 248.42951 * 17 15 14 20 20 C 1.52367 * 59.85018 * 252.56266 * 19 17 15 21 21 C 1.53783 * 121.20375 * 249.48475 * 20 19 17 22 22 C 1.54480 * 102.20642 * 189.98853 * 21 20 19 23 23 C 1.51420 * 105.23404 * 25.73267 * 22 21 20 24 24 C 1.38472 * 130.36184 * 163.13959 * 23 22 21 25 25 C 1.38098 * 120.26219 * 179.97438 * 24 23 22 26 26 C 1.38249 * 119.91475 * 359.97438 * 25 24 23 27 27 C 1.38083 * 119.94195 * 0.02562 * 26 25 24 28 28 C 1.38383 * 109.80296 * 343.13863 * 23 22 21 29 29 H 1.09002 * 109.47021 * 300.00084 * 1 2 3 30 30 H 1.09001 * 109.46630 * 60.00327 * 1 2 3 31 31 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46778 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46652 * 299.99654 * 3 2 1 34 34 H 1.08992 * 109.47514 * 59.99565 * 3 2 1 35 35 H 1.09004 * 109.46976 * 180.02562 * 4 2 1 36 36 H 1.08992 * 109.47530 * 299.99942 * 4 2 1 37 37 H 0.97002 * 119.99803 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 39 39 H 1.09000 * 109.47312 * 60.00000 * 13 2 1 40 40 H 1.08996 * 117.51489 * 0.02562 * 19 17 15 41 41 H 1.09004 * 117.51389 * 145.11276 * 19 17 15 42 42 H 1.09002 * 110.85557 * 308.16373 * 21 20 19 43 43 H 1.08995 * 110.85707 * 71.80965 * 21 20 19 44 44 H 1.09003 * 110.29276 * 144.66989 * 22 21 20 45 45 H 1.08998 * 110.28834 * 266.69480 * 22 21 20 46 46 H 1.07995 * 119.86533 * 359.95845 * 24 23 22 47 47 H 1.08004 * 120.04102 * 180.02562 * 25 24 23 48 48 H 1.08006 * 120.03153 * 180.02562 * 26 25 24 49 49 H 1.07999 * 119.86189 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5378 -0.0111 -2.4796 6 1 0.9172 0.8673 -2.3806 7 6 1.8713 -0.4819 -3.7319 8 7 2.6273 -1.5513 -3.8525 9 14 1.2481 0.3981 -5.2571 10 1 1.7422 1.7985 -5.2572 11 1 1.7431 -0.3020 -6.4696 12 1 -0.2369 0.3972 -5.2573 13 6 2.0400 -0.7212 1.2493 14 8 1.5560 -0.0366 2.4349 15 6 1.9170 -0.5463 3.6230 16 8 2.6148 -1.5315 3.6708 17 6 1.4521 0.1104 4.8972 18 1 0.4582 0.5562 4.8610 19 6 2.5085 0.8040 5.7619 20 6 1.8955 -0.5155 6.2142 21 6 0.9467 -0.5804 7.4227 22 6 0.8059 -2.1024 7.6461 23 6 2.0730 -2.7067 7.0785 24 6 2.6334 -3.9585 7.2699 25 6 3.8145 -4.2961 6.6388 26 6 4.4404 -3.3817 5.8122 27 6 3.8837 -2.1328 5.6197 28 6 2.6999 -1.7909 6.2520 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1301 -0.7218 -1.2489 36 1 1.6768 -1.7490 -1.2490 37 1 2.8616 -1.8828 -4.7335 38 1 3.1301 -0.7208 1.2496 39 1 1.6767 -1.7488 1.2494 40 1 3.5395 0.7857 5.4087 41 1 2.2097 1.7070 6.2944 42 1 1.3937 -0.1002 8.2932 43 1 -0.0177 -0.1324 7.1834 44 1 0.7261 -2.3225 8.7106 45 1 -0.0668 -2.4832 7.1155 46 1 2.1449 -4.6734 7.9153 47 1 4.2481 -5.2736 6.7903 48 1 5.3639 -3.6439 5.3174 49 1 4.3740 -1.4193 4.9740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195063771.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:13 Heat of formation + Delta-G solvation = -49.079737 kcal Electronic energy + Delta-G solvation = -28028.925291 eV Core-core repulsion = 24307.077084 eV Total energy + Delta-G solvation = -3721.848207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.11445 -39.70957 -37.59268 -36.72996 -35.32571 -33.96264 -32.33275 -30.69468 -29.00438 -27.50024 -26.70323 -26.40321 -25.32906 -24.31441 -22.86643 -22.68574 -21.11838 -20.68899 -19.34151 -18.21949 -17.52100 -16.72287 -16.25387 -16.07727 -15.69411 -15.35473 -15.01351 -14.77818 -14.56297 -14.24845 -13.77828 -13.56667 -13.26483 -13.08271 -12.91856 -12.62684 -12.45763 -12.30684 -12.08675 -12.02940 -11.97009 -11.78020 -11.26282 -11.23554 -10.95389 -10.85646 -10.79925 -10.68023 -10.63310 -10.58737 -10.38442 -10.25371 -10.23108 -10.14282 -9.72140 -9.21348 -8.95487 -8.62845 -8.39572 -8.36542 -6.00865 -4.02088 1.28308 1.46289 2.27975 2.84310 3.32535 3.37438 3.39346 3.46361 3.89269 4.17679 4.27961 4.30373 4.44716 4.50462 4.74203 5.01393 5.03225 5.04838 5.15663 5.19998 5.31861 5.34669 5.36620 5.46130 5.52143 5.52837 5.55736 5.63376 5.63989 5.77400 5.82845 5.83360 5.98830 6.06908 6.15498 6.20385 6.39073 6.46595 6.52156 6.57272 6.65726 6.67133 6.71404 6.86927 7.02611 7.11252 7.12250 7.14407 7.60676 7.72748 7.97259 8.04870 8.39757 9.02042 9.60884 11.10808 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.002562 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.340313 B =10924.835014 C =11663.239800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.125 4.125 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.081 3.919 14 O -0.348 6.348 15 C 0.480 3.520 16 O -0.497 6.497 17 C -0.145 4.145 18 H 0.137 0.863 19 C -0.133 4.133 20 C -0.058 4.058 21 C -0.084 4.084 22 C -0.079 4.079 23 C -0.094 4.094 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.130 4.130 27 C -0.046 4.046 28 C -0.059 4.059 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 1.538 25.747 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.008 3.992 14 O -0.264 6.264 15 C 0.322 3.678 16 O -0.386 6.386 17 C -0.164 4.164 18 H 0.155 0.845 19 C -0.170 4.170 20 C -0.058 4.058 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.094 4.094 24 C -0.139 4.139 25 C -0.133 4.133 26 C -0.149 4.149 27 C -0.064 4.064 28 C -0.059 4.059 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.160 1.115 25.571 25.622 hybrid contribution -0.186 0.135 -1.301 1.321 sum -1.345 1.250 24.270 24.340 Atomic orbital electron populations 1.21711 0.94872 1.00886 1.00788 1.20808 0.96120 0.96187 0.92728 1.21706 0.99956 0.95763 1.00810 1.19112 0.96319 0.95265 0.89450 1.21119 1.31277 1.12130 0.90315 0.92133 1.25015 0.95283 0.95094 0.99111 1.69959 1.36926 1.23032 1.23602 0.86674 0.79187 0.79760 0.82484 1.20256 1.21376 1.20261 1.23477 0.98762 0.95873 0.81060 1.86471 1.69422 1.55774 1.14722 1.22487 0.77688 0.82371 0.85220 1.90710 1.35144 1.25081 1.87622 1.21832 1.02044 1.05265 0.87252 0.84488 1.23045 0.97877 0.95815 1.00240 1.20403 0.99170 0.92533 0.93738 1.21855 0.98351 0.96322 0.95547 1.21029 0.95431 0.94261 1.00911 1.20455 0.96482 0.94182 0.98312 1.20463 0.96474 0.95471 1.01498 1.20991 0.95626 0.99223 0.97460 1.20995 1.00553 0.93872 0.99432 1.20496 0.94036 0.96472 0.95399 1.19376 0.94859 0.93814 0.97876 0.94230 0.91587 0.93828 0.93839 0.91598 0.94200 0.96412 0.96407 0.92956 0.91774 0.91748 0.87783 0.86716 0.89826 0.90094 0.90580 0.90168 0.86636 0.86233 0.86169 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 2 C -0.06 -1.19 0.61 -154.50 -0.09 -1.29 16 3 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 5 C -0.51 -13.83 7.65 -34.44 -0.26 -14.09 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.08 1.53 4.32 37.16 0.16 1.69 16 14 O -0.35 -5.85 8.88 -39.26 -0.35 -6.20 16 15 C 0.48 7.36 7.74 36.00 0.28 7.64 16 16 O -0.50 -8.67 11.57 -18.75 -0.22 -8.89 16 17 C -0.14 -1.62 6.16 -92.01 -0.57 -2.18 16 18 H 0.14 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.13 -1.20 9.93 -26.99 -0.27 -1.47 16 20 C -0.06 -0.60 2.34 -155.81 -0.36 -0.96 16 21 C -0.08 -0.63 6.85 -25.55 -0.17 -0.81 16 22 C -0.08 -0.68 6.77 -26.75 -0.18 -0.86 16 23 C -0.09 -1.08 6.14 -104.13 -0.64 -1.72 16 24 C -0.12 -1.34 10.04 -39.55 -0.40 -1.73 16 25 C -0.11 -1.29 10.05 -39.63 -0.40 -1.69 16 26 C -0.13 -1.62 10.04 -39.63 -0.40 -2.02 16 27 C -0.05 -0.62 7.45 -39.54 -0.29 -0.92 16 28 C -0.06 -0.75 4.86 -104.41 -0.51 -1.25 16 29 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 30 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 34 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 38 H 0.06 1.23 8.13 -51.93 -0.42 0.80 16 39 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 40 H 0.10 1.00 8.13 -51.93 -0.42 0.58 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 48 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 49 H 0.12 1.61 7.22 -52.49 -0.38 1.23 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -31.43 390.98 -10.74 -42.17 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -8.06 Total: 0.19 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -3.72 Total: -23.61 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.57 Total: -15.09 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.43 -10.74 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195063771.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.910 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds