Wall clock time and date at job start Tue Mar 31 2020 14:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47309 * 2 1 4 4 C 1.53000 * 109.47035 * 239.99662 * 2 1 3 5 5 C 1.50706 * 109.46965 * 60.00637 * 4 2 1 6 6 H 1.08001 * 119.99805 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99754 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00073 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99570 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47528 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47345 * 119.99638 * 9 7 5 12 12 H 1.48504 * 109.47000 * 239.99676 * 9 7 5 13 13 C 1.53000 * 109.46976 * 120.00335 * 2 1 3 14 14 O 1.45208 * 109.46976 * 299.99989 * 13 2 1 15 15 C 1.34224 * 116.99795 * 180.02562 * 14 13 2 16 16 O 1.20823 * 120.00578 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99528 * 180.02562 * 15 14 13 18 18 H 1.08991 * 115.56415 * 26.11027 * 17 15 14 19 19 C 1.53128 * 117.51215 * 171.85866 * 17 15 14 20 20 C 1.52375 * 59.90568 * 107.46189 * 19 17 15 21 21 C 1.53782 * 121.20348 * 249.49975 * 20 19 17 22 22 C 1.54484 * 102.20766 * 189.98715 * 21 20 19 23 23 C 1.51424 * 105.23211 * 25.73393 * 22 21 20 24 24 C 1.38465 * 130.36317 * 163.13561 * 23 22 21 25 25 C 1.38088 * 120.26809 * 179.97438 * 24 23 22 26 26 C 1.38258 * 119.91317 * 359.97438 * 25 24 23 27 27 C 1.38087 * 119.93673 * 0.02562 * 26 25 24 28 28 C 1.38383 * 109.79949 * 343.13905 * 23 22 21 29 29 H 1.08997 * 109.47039 * 300.00119 * 1 2 3 30 30 H 1.09004 * 109.46810 * 60.00137 * 1 2 3 31 31 H 1.08996 * 109.47083 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47335 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47065 * 299.99762 * 3 2 1 34 34 H 1.08997 * 109.47167 * 59.99959 * 3 2 1 35 35 H 1.09002 * 109.46758 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.47856 * 300.00349 * 4 2 1 37 37 H 0.97002 * 119.99902 * 180.02562 * 8 7 5 38 38 H 1.08995 * 109.47334 * 179.97438 * 13 2 1 39 39 H 1.09005 * 109.47400 * 59.99396 * 13 2 1 40 40 H 1.09007 * 117.50979 * 214.92770 * 19 17 15 41 41 H 1.09000 * 117.51444 * 359.97438 * 19 17 15 42 42 H 1.09001 * 110.86030 * 308.17205 * 21 20 19 43 43 H 1.09003 * 110.85574 * 71.80971 * 21 20 19 44 44 H 1.08994 * 110.28757 * 144.67688 * 22 21 20 45 45 H 1.09004 * 110.28599 * 266.69955 * 22 21 20 46 46 H 1.08006 * 119.86203 * 0.02562 * 24 23 22 47 47 H 1.08000 * 120.04572 * 180.02562 * 25 24 23 48 48 H 1.07996 * 120.03226 * 179.97438 * 26 25 24 49 49 H 1.07995 * 119.85305 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9166 0.8671 -2.3806 7 6 1.8704 -0.4823 -3.7320 8 7 2.6264 -1.5516 -3.8526 9 14 1.2473 0.3980 -5.2572 10 1 0.4219 1.5645 -4.8530 11 1 2.4019 0.8645 -6.0660 12 1 0.4220 -0.5356 -6.0650 13 6 2.0400 -0.7213 1.2492 14 8 1.5559 -0.0368 2.4348 15 6 1.9170 -0.5467 3.6228 16 8 2.6140 -1.5324 3.6706 17 6 1.4520 0.1099 4.8971 18 1 0.5223 0.6739 4.8235 19 6 1.7338 -0.6208 6.2130 20 6 2.5206 0.6331 5.8516 21 6 4.0136 0.5603 5.4903 22 6 4.4167 2.0514 5.4649 23 6 3.4351 2.7446 6.3863 24 6 3.4937 3.9923 6.9839 25 6 2.4654 4.4227 7.7988 26 6 1.3721 3.6056 8.0192 27 6 1.3111 2.3608 7.4245 28 6 2.3415 1.9259 6.6076 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 -0.7217 -1.2489 36 1 1.6767 -1.7490 -1.2493 37 1 2.8607 -1.8831 -4.7336 38 1 3.1299 -0.7218 1.2490 39 1 1.6766 -1.7490 1.2492 40 1 0.9893 -0.5373 7.0048 41 1 2.2551 -1.5764 6.1567 42 1 4.5721 0.0202 6.2549 43 1 4.1540 0.1036 4.5106 44 1 5.4343 2.1742 5.8354 45 1 4.3328 2.4484 4.4532 46 1 4.3468 4.6317 6.8112 47 1 2.5146 5.3968 8.2627 48 1 0.5670 3.9402 8.6565 49 1 0.4563 1.7238 7.5973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195063786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:16 Heat of formation + Delta-G solvation = -56.974104 kcal Electronic energy + Delta-G solvation = -27756.709739 eV Core-core repulsion = 24034.519207 eV Total energy + Delta-G solvation = -3722.190532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15754 -39.93768 -37.78236 -36.66996 -35.34359 -34.10891 -32.33781 -30.96960 -29.14861 -27.53933 -26.72418 -26.40583 -25.41265 -24.37769 -22.99627 -22.75169 -21.30076 -20.58465 -19.49810 -18.20538 -17.51204 -16.86463 -16.36114 -16.06602 -15.85378 -15.49878 -15.29104 -15.03743 -14.56083 -14.23215 -13.77796 -13.63012 -13.42594 -13.12122 -12.89945 -12.66242 -12.52593 -12.42307 -12.09013 -12.05226 -12.01491 -11.77571 -11.38535 -11.24466 -11.09692 -10.98169 -10.81934 -10.73547 -10.64232 -10.60544 -10.45499 -10.29247 -10.27286 -10.16914 -9.73728 -9.22086 -9.06540 -8.93889 -8.68882 -8.37552 -6.01511 -4.02469 0.98242 1.11733 2.19826 2.80080 3.30199 3.34969 3.38204 3.41500 3.74048 4.09873 4.16186 4.30473 4.44469 4.47890 4.66903 4.74803 4.79552 4.98631 5.03171 5.16792 5.21766 5.30871 5.34298 5.37658 5.47692 5.49779 5.51117 5.60175 5.70606 5.75092 5.76959 5.82038 5.86791 5.92791 6.05074 6.18734 6.19267 6.23301 6.38435 6.39356 6.52208 6.63812 6.70905 6.71331 6.82072 7.10952 7.12100 7.13829 7.60447 7.72024 7.95725 7.98468 8.39293 9.02091 9.60684 11.10209 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.002454 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.789605 B =11408.513713 C =11883.036863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.079 3.921 14 O -0.344 6.344 15 C 0.488 3.512 16 O -0.511 6.511 17 C -0.146 4.146 18 H 0.134 0.866 19 C -0.128 4.128 20 C -0.057 4.057 21 C -0.090 4.090 22 C -0.084 4.084 23 C -0.083 4.083 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.101 4.101 28 C -0.063 4.063 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.124 0.876 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 8.663 25.465 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 O -0.260 6.260 15 C 0.332 3.668 16 O -0.400 6.400 17 C -0.165 4.165 18 H 0.152 0.848 19 C -0.165 4.165 20 C -0.057 4.057 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.083 4.083 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.119 4.119 28 C -0.063 4.063 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.142 0.858 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.229 8.257 25.284 26.599 hybrid contribution -0.329 0.280 -1.064 1.148 sum -0.558 8.537 24.220 25.686 Atomic orbital electron populations 1.21716 0.94848 1.00920 1.00847 1.20805 0.96145 0.96193 0.92663 1.21709 0.99969 0.95755 1.00849 1.19136 0.96375 0.95303 0.89466 1.21191 1.31102 1.12088 0.90267 0.92020 1.25017 0.95312 0.95095 0.99136 1.69976 1.37055 1.23087 1.23378 0.86562 0.78621 0.79702 0.83283 1.19708 1.21100 1.21104 1.23528 0.98881 0.95942 0.81020 1.86482 1.69229 1.55632 1.14680 1.22305 0.77312 0.81953 0.85272 1.90646 1.35728 1.25536 1.88094 1.21858 1.01894 1.05301 0.87468 0.84802 1.23098 1.02053 0.96511 0.94820 1.20328 0.93463 0.92982 0.98955 1.21914 0.91496 0.96278 1.03044 1.21111 0.97927 0.94064 0.98951 1.20600 0.96368 0.94151 0.97183 1.20628 0.99289 0.95111 0.97698 1.21065 0.93982 0.99724 0.98654 1.21012 0.98514 0.94106 1.00419 1.20605 0.97885 0.96334 0.97057 1.19603 0.95165 0.94147 0.97388 0.94214 0.91553 0.93767 0.93807 0.91563 0.94212 0.96350 0.96342 0.93075 0.91645 0.91594 0.87196 0.86596 0.89730 0.89851 0.90228 0.89621 0.86075 0.85830 0.85797 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 2 C -0.06 -1.18 0.61 -154.51 -0.09 -1.27 16 3 C -0.13 -2.41 8.08 37.15 0.30 -2.11 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.71 7.65 -34.44 -0.26 -13.97 16 6 H 0.06 1.61 5.68 -52.49 -0.30 1.32 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.08 1.48 4.32 37.16 0.16 1.64 16 14 O -0.34 -5.83 8.88 -39.24 -0.35 -6.18 16 15 C 0.49 7.50 6.68 36.01 0.24 7.74 16 16 O -0.51 -8.89 15.18 -18.75 -0.28 -9.17 16 17 C -0.15 -1.70 6.18 -91.94 -0.57 -2.27 16 18 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 19 C -0.13 -1.23 9.73 -26.98 -0.26 -1.49 16 20 C -0.06 -0.60 2.34 -155.75 -0.36 -0.97 16 21 C -0.09 -0.96 6.62 -25.55 -0.17 -1.13 16 22 C -0.08 -0.81 6.77 -26.75 -0.18 -0.99 16 23 C -0.08 -0.84 6.14 -104.13 -0.64 -1.48 16 24 C -0.11 -0.97 10.03 -39.55 -0.40 -1.36 16 25 C -0.12 -0.92 10.05 -39.63 -0.40 -1.32 16 26 C -0.12 -0.97 10.05 -39.63 -0.40 -1.37 16 27 C -0.10 -0.89 9.98 -39.54 -0.39 -1.29 16 28 C -0.06 -0.64 5.93 -104.41 -0.62 -1.26 16 29 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 30 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 34 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 39 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 40 H 0.11 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.12 1.19 7.70 -51.93 -0.40 0.79 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.05 6.30 -51.93 -0.33 0.72 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 49 H 0.12 0.84 8.05 -52.49 -0.42 0.42 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -30.87 395.29 -10.90 -41.77 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.98 Total: -0.09 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.96 Total: -22.82 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.63 Total: -15.35 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.87 -10.90 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195063786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.201 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds