Wall clock time and date at job start Tue Mar 31 2020 16:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00498 * 2 1 4 4 H 1.48492 * 109.47314 * 270.00347 * 3 2 1 5 5 H 1.48510 * 109.46859 * 29.99913 * 3 2 1 6 6 H 1.48500 * 109.47386 * 149.99665 * 3 2 1 7 7 C 1.38815 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00501 * 163.06501 * 7 2 1 9 9 N 1.36940 * 119.99948 * 343.07258 * 7 2 1 10 10 C 1.46925 * 120.63110 * 331.84194 * 9 7 2 11 11 C 1.53188 * 108.77799 * 233.58994 * 10 9 7 12 12 C 1.53036 * 109.33917 * 305.37965 * 11 10 9 13 13 C 1.53040 * 109.53918 * 61.31546 * 12 11 10 14 14 H 1.09008 * 109.49695 * 58.65448 * 13 12 11 15 15 C 1.52995 * 109.50052 * 178.71419 * 13 12 11 16 16 N 1.46496 * 109.47581 * 184.93570 * 15 13 12 17 17 C 1.34776 * 119.99979 * 180.27515 * 16 15 13 18 18 O 1.21273 * 120.00494 * 359.72739 * 17 16 15 19 19 C 1.50706 * 119.99820 * 179.72422 * 17 16 15 20 20 C 1.54342 * 110.82269 * 292.97302 * 19 17 16 21 21 C 1.51372 * 105.17157 * 215.42432 * 20 19 17 22 22 C 1.38494 * 130.39237 * 197.18979 * 21 20 19 23 23 C 1.38107 * 120.21498 * 180.02562 * 22 21 20 24 24 C 1.38249 * 119.93033 * 359.97438 * 23 22 21 25 25 C 1.38091 * 119.94062 * 0.02562 * 24 23 22 26 26 C 1.38218 * 109.75502 * 17.19294 * 21 20 19 27 27 C 1.51370 * 109.75929 * 359.97438 * 26 21 20 28 28 C 1.46925 * 120.62900 * 151.82371 * 9 7 2 29 29 H 0.96997 * 119.99638 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58755 * 353.37751 * 10 9 7 31 31 H 1.09000 * 109.58441 * 113.65862 * 10 9 7 32 32 H 1.08998 * 109.49626 * 65.31751 * 11 10 9 33 33 H 1.08998 * 109.49994 * 185.41154 * 11 10 9 34 34 H 1.08995 * 109.43457 * 301.30989 * 12 11 10 35 35 H 1.09001 * 109.48745 * 181.34977 * 12 11 10 36 36 H 1.09003 * 109.46852 * 64.93317 * 15 13 12 37 37 H 1.09007 * 109.47051 * 304.93803 * 15 13 12 38 38 H 0.97004 * 120.00050 * 0.02562 * 16 15 13 39 39 H 1.09001 * 110.72770 * 56.59745 * 19 17 16 40 40 H 1.08998 * 110.30556 * 334.35290 * 20 19 17 41 41 H 1.09005 * 110.30649 * 96.49968 * 20 19 17 42 42 H 1.07998 * 119.88860 * 359.97438 * 22 21 20 43 43 H 1.08000 * 120.03009 * 180.02562 * 23 22 21 44 44 H 1.08002 * 120.02719 * 179.97438 * 24 23 22 45 45 H 1.08006 * 119.89701 * 180.02562 * 25 24 23 46 46 H 1.08996 * 110.30425 * 223.88910 * 27 26 21 47 47 H 1.09002 * 110.38158 * 101.78430 * 27 26 21 48 48 H 1.08989 * 109.58994 * 6.62432 * 28 9 7 49 49 H 1.09004 * 109.70402 * 246.26031 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2225 -0.2730 9 7 1.3700 -2.3626 0.3442 10 6 0.2261 -2.3410 1.2660 11 6 0.4974 -3.3209 2.4117 12 6 0.8123 -4.7023 1.8332 13 6 2.0672 -4.6181 0.9612 14 1 2.9026 -4.2552 1.5601 15 6 2.3996 -6.0058 0.4092 16 7 3.6644 -5.9482 -0.3276 17 6 4.1560 -7.0596 -0.9103 18 8 3.5539 -8.1085 -0.8206 19 6 5.4541 -6.9990 -1.6736 20 6 5.3022 -6.1399 -2.9469 21 6 6.1795 -6.8090 -3.9832 22 6 6.6795 -6.3277 -5.1817 23 6 7.4715 -7.1319 -5.9774 24 6 7.7672 -8.4216 -5.5768 25 6 7.2697 -8.9034 -4.3822 26 6 6.4751 -8.0985 -3.5827 27 6 5.8173 -8.3839 -2.2497 28 6 1.8137 -3.6528 -0.2009 29 1 -0.4849 0.8401 -0.0004 30 1 0.0992 -1.3355 1.6675 31 1 -0.6775 -2.6386 0.7340 32 1 1.3472 -2.9699 2.9972 33 1 -0.3831 -3.3863 3.0509 34 1 -0.0281 -5.0423 1.2282 35 1 0.9823 -5.4072 2.6470 36 1 1.6033 -6.3306 -0.2605 37 1 2.4914 -6.7125 1.2341 38 1 4.1463 -5.1094 -0.3992 39 1 6.2566 -6.6205 -1.0405 40 1 4.2636 -6.1339 -3.2775 41 1 5.6463 -5.1226 -2.7600 42 1 6.4485 -5.3204 -5.4953 43 1 7.8601 -6.7533 -6.9113 44 1 8.3861 -9.0520 -6.1981 45 1 7.5015 -9.9109 -4.0697 46 1 6.5128 -8.8989 -1.5872 47 1 4.9171 -8.9822 -2.3909 48 1 2.7343 -3.5130 -0.7673 49 1 1.0417 -4.0611 -0.8532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278250982.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:25 Heat of formation + Delta-G solvation = -9.065128 kcal Electronic energy + Delta-G solvation = -27564.186650 eV Core-core repulsion = 23876.366358 eV Total energy + Delta-G solvation = -3687.820292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.73304 -39.30653 -37.83065 -35.62015 -34.83349 -33.02675 -31.62035 -30.64579 -30.45793 -29.33195 -27.48038 -25.68531 -25.28539 -23.42901 -22.14148 -21.57723 -21.13609 -20.88800 -20.00809 -19.01493 -17.41287 -16.68678 -16.41416 -16.04269 -15.86826 -15.11154 -14.97841 -14.87546 -14.46301 -14.14538 -13.68811 -13.46726 -13.42804 -13.38088 -13.09452 -12.90230 -12.81407 -12.57090 -12.33101 -12.21109 -12.11728 -11.46925 -11.41143 -11.35157 -11.29296 -11.04345 -10.98551 -10.72759 -10.52820 -10.26972 -10.20929 -9.98629 -9.85296 -9.56156 -9.45003 -9.00729 -8.95101 -8.69601 -8.49791 -6.70360 -5.82543 -3.25595 1.14816 1.19016 2.62334 3.21189 3.33894 3.41425 3.42941 3.55386 4.09758 4.30930 4.44864 4.71159 4.76674 4.79809 4.85098 4.99822 5.05946 5.15596 5.27690 5.31237 5.40053 5.41313 5.44253 5.53906 5.55576 5.59530 5.63340 5.80362 5.84903 5.91729 5.93269 5.97495 5.99290 6.20893 6.23788 6.30448 6.30520 6.35072 6.44941 6.49379 6.56367 6.67565 6.74691 6.79792 6.83267 6.93391 7.37078 7.56153 7.64585 7.74918 8.24246 8.41107 9.17250 9.80844 10.37800 11.25802 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.002743 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.710573 B =10204.360640 C =12023.163371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.126 3.874 16 N -0.721 5.721 17 C 0.521 3.479 18 O -0.544 6.544 19 C -0.111 4.111 20 C -0.073 4.073 21 C -0.095 4.095 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.093 4.093 27 C -0.067 4.067 28 C 0.155 3.845 29 H 0.254 0.746 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.404 0.596 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.050 0.950 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.966 -14.999 -5.105 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.371 5.371 17 C 0.307 3.693 18 O -0.422 6.422 19 C -0.132 4.132 20 C -0.110 4.110 21 C -0.095 4.095 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.127 4.127 26 C -0.093 4.093 27 C -0.105 4.105 28 C 0.028 3.972 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.239 0.761 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.097 0.903 47 H 0.118 0.882 48 H 0.068 0.932 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 12.394 -15.575 -5.030 20.530 hybrid contribution 0.636 1.341 -0.099 1.488 sum 13.030 -14.234 -5.129 19.967 Atomic orbital electron populations 1.70034 1.05298 1.25539 1.53670 1.25049 0.95268 0.98428 1.00832 0.86324 0.79170 0.83705 0.77718 1.21386 1.21553 1.20483 1.19133 0.92451 0.84795 1.42017 0.91797 1.44031 1.35922 1.01332 1.50072 1.20794 0.88557 0.98286 0.88056 1.22165 1.00102 0.95967 0.99829 1.21340 0.96751 0.97738 0.97965 1.21955 0.98849 0.93610 0.99412 0.90881 1.21476 0.84836 0.98007 0.95427 1.46078 1.24982 1.11818 1.54267 1.20266 0.86384 0.83736 0.78937 1.90678 1.60758 1.29914 1.60818 1.21986 0.96318 0.98034 0.96877 1.20999 0.99939 0.98925 0.91137 1.20515 0.98129 0.95309 0.95512 1.20664 0.97828 1.00099 0.93645 1.21039 0.98986 0.94335 0.99723 1.21029 1.00432 0.96032 0.96437 1.20608 0.97955 0.99544 0.94558 1.20615 0.97366 0.94528 0.96763 1.20930 1.01121 0.96102 0.92308 1.20883 0.97440 0.86838 0.92060 0.93601 0.89595 0.96434 0.92758 0.93183 0.92490 0.93445 0.91588 0.91975 0.76122 0.87468 0.89379 0.89481 0.86009 0.85918 0.85988 0.86238 0.90314 0.88204 0.93192 0.96421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 11.20 55.49 0.62 -25.11 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.13 29.59 -169.99 -5.03 16.11 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.72 9.58 -15.06 -0.14 -6.87 16 8 H 0.06 1.64 7.89 -52.48 -0.41 1.22 16 9 N -0.59 -14.21 2.99 -172.32 -0.52 -14.72 16 10 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 11 C -0.14 -2.61 6.08 -26.62 -0.16 -2.77 16 12 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 13 C -0.12 -1.87 2.37 -90.50 -0.21 -2.08 16 14 H 0.07 1.19 8.14 -51.92 -0.42 0.76 16 15 C 0.13 1.78 5.07 -4.05 -0.02 1.76 16 16 N -0.72 -9.04 5.33 -60.29 -0.32 -9.37 16 17 C 0.52 6.80 7.04 -10.98 -0.08 6.72 16 18 O -0.54 -8.99 15.50 5.56 0.09 -8.90 16 19 C -0.11 -1.13 3.47 -90.37 -0.31 -1.44 16 20 C -0.07 -0.73 6.31 -26.85 -0.17 -0.90 16 21 C -0.09 -1.01 6.14 -104.21 -0.64 -1.65 16 22 C -0.10 -1.02 10.04 -39.54 -0.40 -1.42 16 23 C -0.12 -1.08 10.05 -39.63 -0.40 -1.48 16 24 C -0.12 -1.04 10.04 -39.63 -0.40 -1.44 16 25 C -0.11 -1.02 10.04 -39.54 -0.40 -1.42 16 26 C -0.09 -0.98 6.14 -104.20 -0.64 -1.62 16 27 C -0.07 -0.70 6.10 -26.86 -0.16 -0.87 16 28 C 0.15 3.01 5.60 -3.71 -0.02 2.99 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.40 4.51 7.70 -40.82 -0.31 4.19 16 39 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.97 7.89 -51.93 -0.41 0.56 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 1.21 6.98 -51.93 -0.36 0.85 16 48 H 0.05 0.92 7.14 -51.94 -0.37 0.55 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -31.07 387.29 -11.81 -42.88 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.09 Total: 3.61 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -4.40 Total: -10.33 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.22 Total: -49.20 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.07 -11.81 -42.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278250982.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.814 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds