Wall clock time and date at job start Tue Mar 31 2020 15:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47133 * 2 1 4 4 C 1.36936 * 120.00014 * 83.54822 * 3 2 1 5 5 H 1.08001 * 119.99697 * 170.03106 * 4 3 2 6 6 C 1.38809 * 120.00298 * 350.02803 * 4 3 2 7 7 N 1.31624 * 119.99907 * 2.07532 * 6 4 3 8 8 Si 1.86803 * 120.00349 * 182.07765 * 6 4 3 9 9 H 1.48501 * 109.46695 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47072 * 119.99975 * 8 6 4 11 11 H 1.48497 * 109.46778 * 240.00014 * 8 6 4 12 12 C 1.46506 * 120.00054 * 263.54444 * 3 2 1 13 13 H 1.09000 * 109.47223 * 173.48238 * 12 3 2 14 14 C 1.52999 * 109.47119 * 53.48259 * 12 3 2 15 15 C 1.50700 * 109.46938 * 293.48466 * 12 3 2 16 16 N 1.32167 * 119.91577 * 49.41426 * 15 12 3 17 17 C 1.33093 * 120.08864 * 180.02562 * 16 15 12 18 18 N 1.37993 * 120.04893 * 179.97438 * 17 16 15 19 19 N 1.32874 * 119.91119 * 359.97438 * 17 16 15 20 20 C 1.32840 * 119.82424 * 0.02562 * 19 17 16 21 21 N 1.38135 * 120.04221 * 179.97438 * 20 19 17 22 22 C 1.39830 * 120.00332 * 1.93740 * 21 20 19 23 23 C 1.38891 * 120.07717 * 144.62617 * 22 21 20 24 24 C 1.38110 * 119.93031 * 179.97438 * 23 22 21 25 25 C 1.38280 * 120.07107 * 0.02562 * 24 23 22 26 26 C 1.38285 * 120.14617 * 0.25307 * 25 24 23 27 27 C 1.38103 * 120.07507 * 359.48931 * 26 25 24 28 28 N 1.32141 * 119.90724 * 229.69464 * 15 12 3 29 29 H 1.08994 * 109.47262 * 185.96681 * 1 2 3 30 30 H 1.09003 * 109.47077 * 305.96883 * 1 2 3 31 31 H 1.08999 * 109.46976 * 65.96418 * 1 2 3 32 32 H 1.08993 * 109.47425 * 240.00095 * 2 1 3 33 33 H 1.08999 * 109.46960 * 119.99602 * 2 1 3 34 34 H 0.96995 * 120.00035 * 180.02562 * 7 6 4 35 35 H 1.08990 * 109.47344 * 180.02562 * 14 12 3 36 36 H 1.09000 * 109.47057 * 300.00082 * 14 12 3 37 37 H 1.08997 * 109.47011 * 59.99494 * 14 12 3 38 38 H 0.96995 * 120.00509 * 180.02562 * 18 17 16 39 39 H 0.97007 * 119.99326 * 0.02562 * 18 17 16 40 40 H 0.97003 * 119.99850 * 181.93719 * 21 20 19 41 41 H 1.07999 * 120.03427 * 359.95985 * 23 22 21 42 42 H 1.07998 * 119.96428 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.92985 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.96791 * 179.74488 * 26 25 24 45 45 H 1.08002 * 120.04028 * 180.22935 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1209 2.0712 1.1784 5 1 2.6278 3.0245 1.2035 6 6 1.5734 1.5453 2.3405 7 7 0.9915 0.3649 2.3183 8 14 1.6624 2.5129 3.9360 9 1 2.3616 3.8007 3.6954 10 1 0.2878 2.7812 4.4295 11 1 2.4080 1.7262 4.9510 12 6 2.3970 2.0243 -1.2607 13 1 2.6223 3.0752 -1.0792 14 6 1.2405 1.9152 -2.2564 15 6 3.6142 1.3402 -1.8278 16 7 3.6423 0.0228 -1.9301 17 6 4.7157 -0.5849 -2.4299 18 7 4.7443 -1.9605 -2.5359 19 7 5.7598 0.1347 -2.8267 20 6 5.7279 1.4586 -2.7223 21 7 6.8111 2.2110 -3.1330 22 6 7.9258 1.5824 -3.6964 23 6 8.6333 2.2037 -4.7174 24 6 9.7341 1.5804 -5.2714 25 6 10.1320 0.3386 -4.8110 26 6 9.4264 -0.2853 -3.7985 27 6 8.3279 0.3349 -3.2365 28 7 4.6529 2.0589 -2.2162 29 1 -0.3633 -1.0220 0.1068 30 1 -0.3633 0.6036 0.8317 31 1 -0.3633 0.4186 -0.9386 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.6086 -0.0024 3.1303 35 1 1.5223 2.3932 -3.1945 36 1 1.0152 0.8643 -2.4379 37 1 0.3601 2.4098 -1.8462 38 1 5.5271 -2.4027 -2.8998 39 1 3.9815 -2.4851 -2.2463 40 1 6.7985 3.1755 -3.0305 41 1 8.3227 3.1733 -5.0780 42 1 10.2849 2.0632 -6.0651 43 1 10.9929 -0.1470 -5.2461 44 1 9.7372 -1.2570 -3.4439 45 1 7.7794 -0.1513 -2.4433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299351500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:03 Heat of formation + Delta-G solvation = 141.080626 kcal Electronic energy + Delta-G solvation = -28076.783714 eV Core-core repulsion = 24324.226638 eV Total energy + Delta-G solvation = -3752.557076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.55345 -40.35597 -38.56133 -37.42802 -36.27391 -34.37003 -33.09123 -32.62075 -31.73747 -31.42228 -30.29657 -30.04964 -26.34958 -25.52691 -24.94699 -23.48199 -23.33214 -22.71514 -21.29982 -20.21875 -19.09752 -18.65789 -18.06056 -17.36973 -17.05692 -16.96436 -16.57806 -16.44565 -15.57732 -15.53896 -15.43964 -15.16444 -14.91730 -14.76663 -14.19688 -14.05451 -13.79661 -13.76052 -13.38893 -13.21278 -13.08368 -12.68352 -12.52212 -12.43583 -12.30850 -12.18862 -12.08204 -11.96346 -11.64631 -11.46162 -11.30026 -10.72707 -10.53797 -10.30787 -10.17302 -9.85072 -9.76567 -8.89532 -8.75463 -7.59086 -5.13001 0.03790 0.28291 0.54810 0.74156 1.48130 1.50132 1.56098 1.59165 2.18601 2.53208 2.87749 2.91913 3.08074 3.40618 3.45160 3.81644 3.99789 4.06662 4.15415 4.37773 4.41596 4.53257 4.59528 4.62930 4.76426 4.86683 5.01074 5.11885 5.13678 5.21859 5.32395 5.35818 5.39424 5.43760 5.51562 5.55343 5.61022 5.64590 5.68921 5.72448 5.87437 6.05639 6.17625 6.25083 6.37692 6.49312 6.53580 6.79284 7.30567 7.65088 7.97896 8.36102 9.27401 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.003164 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.111093 B = 8847.534286 C = 9238.131778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.176 3.824 3 N -0.590 5.590 4 C -0.256 4.256 5 H 0.070 0.930 6 C -0.052 4.052 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.273 1.273 10 H -0.291 1.291 11 H -0.298 1.298 12 C 0.232 3.768 13 H 0.084 0.916 14 C -0.134 4.134 15 C 0.419 3.581 16 N -0.621 5.621 17 C 0.603 3.397 18 N -0.787 5.787 19 N -0.645 5.645 20 C 0.605 3.395 21 N -0.623 5.623 22 C 0.140 3.860 23 C -0.150 4.150 24 C -0.102 4.102 25 C -0.138 4.138 26 C -0.109 4.109 27 C -0.131 4.131 28 N -0.644 5.644 29 H 0.021 0.979 30 H 0.051 0.949 31 H 0.019 0.981 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.240 0.760 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.424 0.576 39 H 0.425 0.575 40 H 0.430 0.570 41 H 0.140 0.860 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.169 -1.604 -16.620 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.051 3.949 3 N -0.310 5.310 4 C -0.385 4.385 5 H 0.088 0.912 6 C -0.246 4.246 7 N -0.565 5.565 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.218 1.218 11 H -0.226 1.226 12 C 0.120 3.880 13 H 0.102 0.898 14 C -0.193 4.193 15 C 0.139 3.861 16 N -0.355 5.355 17 C 0.235 3.765 18 N -0.338 5.338 19 N -0.386 5.386 20 C 0.239 3.761 21 N -0.254 5.254 22 C 0.045 3.955 23 C -0.171 4.171 24 C -0.120 4.120 25 C -0.157 4.157 26 C -0.127 4.127 27 C -0.153 4.153 28 N -0.378 5.378 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.258 0.742 39 H 0.258 0.742 40 H 0.271 0.729 41 H 0.158 0.842 42 H 0.170 0.830 43 H 0.165 0.835 44 H 0.156 0.844 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.147 -1.786 -16.478 22.453 hybrid contribution -0.262 0.313 1.387 1.446 sum 14.885 -1.473 -15.091 21.248 Atomic orbital electron populations 1.22260 0.99185 0.98303 0.98342 1.20861 0.92018 0.83435 0.98548 1.44301 1.73777 1.12210 1.00744 1.19671 1.29574 1.02112 0.87182 0.91201 1.25446 1.00280 0.98337 1.00517 1.70538 1.42806 1.17391 1.25750 0.85205 0.76781 0.78107 0.80327 1.19826 1.21802 1.22591 1.19262 0.87458 0.94683 0.86579 0.89776 1.22062 0.97583 1.02074 0.97630 1.24791 0.93210 0.85719 0.82332 1.68577 1.28147 1.12293 1.26460 1.19700 0.84115 0.88793 0.83852 1.41573 1.23717 0.99645 1.68820 1.68184 1.30215 1.06080 1.34122 1.19304 0.86322 0.85415 0.85054 1.41431 1.12051 1.09324 1.62598 1.17918 0.87652 0.94866 0.95016 1.21129 0.98268 1.02262 0.95443 1.21277 0.95701 0.95284 0.99781 1.21473 1.00866 0.95777 0.97572 1.21262 0.94313 1.00405 0.96748 1.21289 0.97280 0.95480 1.01208 1.68458 1.02834 1.41625 1.24929 0.95997 0.93068 0.96257 0.93159 0.93002 0.94915 0.91832 0.92660 0.91733 0.74245 0.74223 0.72918 0.84205 0.82963 0.83481 0.84407 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 9.08 71.98 0.65 -5.17 16 2 C 0.18 8.74 4.60 86.38 0.40 9.14 16 3 N -0.59 -29.60 2.43 -682.21 -1.66 -31.26 16 4 C -0.26 -14.04 9.75 84.03 0.82 -13.22 16 5 H 0.07 3.79 7.71 -2.91 -0.02 3.77 16 6 C -0.05 -2.87 5.21 84.86 0.44 -2.43 16 7 N -0.92 -52.08 7.28 21.65 0.16 -51.92 16 8 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 12 C 0.23 9.89 3.17 44.24 0.14 10.03 16 13 H 0.08 3.63 7.80 -2.39 -0.02 3.61 16 14 C -0.13 -4.89 8.07 71.98 0.58 -4.31 16 15 C 0.42 17.34 6.60 138.53 0.91 18.26 16 16 N -0.62 -24.55 7.77 -190.35 -1.48 -26.03 16 17 C 0.60 20.50 8.76 261.25 2.29 22.79 16 18 N -0.79 -18.80 9.05 -59.46 -0.54 -19.34 16 19 N -0.65 -21.53 7.11 -200.48 -1.43 -22.96 16 20 C 0.60 20.93 8.29 261.18 2.17 23.09 16 21 N -0.62 -16.99 5.47 -190.32 -1.04 -18.03 16 22 C 0.14 3.41 6.30 38.18 0.24 3.65 16 23 C -0.15 -2.77 9.97 22.40 0.22 -2.55 16 24 C -0.10 -1.51 10.04 22.25 0.22 -1.29 16 25 C -0.14 -2.07 10.04 22.29 0.22 -1.85 16 26 C -0.11 -2.04 10.04 22.25 0.22 -1.81 16 27 C -0.13 -3.26 8.60 22.40 0.19 -3.07 16 28 N -0.64 -24.96 10.44 -190.24 -1.99 -26.94 16 29 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 2.78 6.04 -2.39 -0.01 2.76 16 31 H 0.02 0.82 6.31 -2.39 -0.02 0.81 16 32 H 0.05 2.35 5.39 -2.39 -0.01 2.34 16 33 H 0.05 2.99 5.93 -2.39 -0.01 2.97 16 34 H 0.24 13.44 8.31 -92.71 -0.77 12.67 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 2.08 6.57 -2.39 -0.02 2.06 16 37 H 0.06 2.36 8.03 -2.39 -0.02 2.35 16 38 H 0.42 7.71 8.95 -92.71 -0.83 6.88 16 39 H 0.42 9.15 8.95 -92.70 -0.83 8.32 16 40 H 0.43 10.02 8.94 -92.71 -0.83 9.19 16 41 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 45 H 0.12 3.43 6.16 -2.91 -0.02 3.41 16 Total: -1.00 -67.50 362.54 2.36 -65.14 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -1.42 Total: 32.46 kcal Atomic # 6 Polarization: 41.54 SS G_CDS: 9.73 Total: 51.27 kcal Atomic # 7 Polarization: -188.51 SS G_CDS: -7.97 Total: -196.48 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -67.50 2.36 -65.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299351500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.221 kcal (2) G-P(sol) polarization free energy of solvation -67.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds