Wall clock time and date at job start Tue Mar 31 2020 16:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48501 * 109.47217 * 269.99743 * 3 2 1 5 5 H 1.48500 * 109.47339 * 30.00160 * 3 2 1 6 6 H 1.48503 * 109.47056 * 149.99746 * 3 2 1 7 7 C 1.37879 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99588 * 0.02562 * 7 2 1 10 10 C 1.53037 * 109.46077 * 179.97438 * 9 7 2 11 11 C 1.53188 * 109.31547 * 178.62938 * 10 9 7 12 12 N 1.46924 * 108.77815 * 54.63538 * 11 10 9 13 13 C 1.34780 * 120.63231 * 126.36906 * 12 11 10 14 14 O 1.21583 * 120.00120 * 5.12267 * 13 12 11 15 15 N 1.34778 * 119.99833 * 185.13070 * 13 12 11 16 16 C 1.39941 * 119.99942 * 185.68606 * 15 13 12 17 17 C 1.38610 * 119.80207 * 24.88360 * 16 15 13 18 18 C 1.38106 * 119.69192 * 180.02562 * 17 16 15 19 19 C 1.38013 * 119.85001 * 0.23178 * 18 17 16 20 20 C 1.38925 * 120.69835 * 359.73771 * 19 18 17 21 21 C 1.37594 * 119.71556 * 0.07541 * 20 19 18 22 22 C 1.50629 * 122.59411 * 180.22032 * 21 20 19 23 23 C 1.52745 * 110.57638 * 342.31334 * 22 21 20 24 24 C 1.53328 * 108.35808 * 51.11342 * 23 22 21 25 25 C 1.50635 * 117.72883 * 179.80434 * 20 19 18 26 26 C 1.46930 * 118.73602 * 306.64578 * 12 11 10 27 27 C 1.52755 * 109.00984 * 53.30903 * 26 12 11 28 28 H 0.97010 * 120.00164 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46504 * 299.97588 * 9 7 2 30 30 H 1.09003 * 109.49697 * 58.67529 * 10 9 7 31 31 H 1.09004 * 109.52287 * 298.59666 * 10 9 7 32 32 H 1.08998 * 109.58579 * 294.84561 * 11 10 9 33 33 H 1.09003 * 109.70824 * 174.49002 * 11 10 9 34 34 H 0.97006 * 120.00063 * 5.67954 * 15 13 12 35 35 H 1.07999 * 120.15747 * 359.97438 * 17 16 15 36 36 H 1.08003 * 120.07180 * 180.09273 * 18 17 16 37 37 H 1.07998 * 119.65030 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.25495 * 102.59198 * 22 21 20 39 39 H 1.08990 * 109.25321 * 222.02903 * 22 21 20 40 40 H 1.08994 * 109.68361 * 170.83181 * 23 22 21 41 41 H 1.09002 * 109.68444 * 291.39739 * 23 22 21 42 42 H 1.09001 * 109.68343 * 49.84085 * 24 23 22 43 43 H 1.08990 * 109.68220 * 170.39293 * 24 23 22 44 44 H 1.09003 * 109.25337 * 282.99676 * 25 20 19 45 45 H 1.08996 * 109.25253 * 42.41501 * 25 20 19 46 46 H 1.09006 * 109.58352 * 173.13820 * 26 12 11 47 47 H 1.08995 * 109.58866 * 293.56671 * 26 12 11 48 48 H 1.09001 * 109.57100 * 185.55378 * 27 26 12 49 49 H 1.09002 * 109.38855 * 65.51132 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2457 -3.6621 0.0005 11 6 1.4767 -4.9865 0.0351 12 7 0.5226 -5.0087 -1.0819 13 6 0.5124 -6.0344 -1.9562 14 8 1.2326 -6.9967 -1.7728 15 7 -0.2959 -5.9933 -3.0338 16 6 -0.3956 -7.1060 -3.8766 17 6 -0.1162 -8.3709 -3.3834 18 6 -0.2147 -9.4674 -4.2173 19 6 -0.5856 -9.2967 -5.5356 20 6 -0.8674 -8.0313 -6.0350 21 6 -0.7747 -6.9356 -5.2080 22 6 -1.0698 -5.5358 -5.6797 23 6 -1.0382 -5.4654 -7.2052 24 6 -1.9353 -6.5788 -7.7587 25 6 -1.2613 -7.9217 -7.4848 26 6 -0.4163 -3.8884 -1.2313 27 6 0.3702 -2.5790 -1.2485 28 1 -0.4851 0.8401 -0.0004 29 1 0.6244 -2.5567 0.8906 30 1 2.8882 -3.5914 0.8783 31 1 2.8562 -3.6193 -0.9015 32 1 0.9372 -5.0712 0.9784 33 1 2.1736 -5.8189 -0.0632 34 1 -0.8087 -5.1924 -3.2253 35 1 0.1781 -8.4984 -2.3522 36 1 0.0001 -10.4560 -3.8391 37 1 -0.6621 -10.1565 -6.1847 38 1 -2.0572 -5.2382 -5.3266 39 1 -0.3228 -4.8544 -5.2728 40 1 -1.4101 -4.4957 -7.5358 41 1 -0.0167 -5.6073 -7.5581 42 1 -2.9062 -6.5480 -7.2642 43 1 -2.0654 -6.4457 -8.8326 44 1 -0.3707 -8.0102 -8.1069 45 1 -1.9526 -8.7276 -7.7313 46 1 -0.9664 -3.9949 -2.1663 47 1 -1.1134 -3.8817 -0.3934 48 1 -0.3223 -1.7373 -1.2597 49 1 0.9979 -2.5456 -2.1390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334930385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:15 Heat of formation + Delta-G solvation = -17.127448 kcal Electronic energy + Delta-G solvation = -28430.617339 eV Core-core repulsion = 24742.447438 eV Total energy + Delta-G solvation = -3688.169900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.91733 -39.51530 -37.24915 -35.98201 -34.92198 -33.59200 -31.78618 -30.83247 -30.27517 -30.09590 -28.23144 -26.17435 -23.87269 -23.48757 -22.87170 -22.52209 -21.71335 -20.16297 -19.55266 -18.86968 -18.07590 -16.89254 -16.31418 -16.01047 -15.52282 -15.18186 -15.07460 -14.76185 -14.51562 -14.04502 -13.91025 -13.70024 -13.52526 -13.20565 -13.08339 -12.85162 -12.68380 -12.57282 -12.43389 -12.17891 -11.82838 -11.62444 -11.54391 -11.36154 -11.09874 -10.98206 -10.69585 -10.67125 -10.54578 -10.44129 -10.26476 -10.14855 -9.71297 -9.57134 -9.23376 -9.00975 -8.50987 -8.44045 -8.19161 -7.73147 -6.08353 -4.14347 1.39157 1.46210 2.82064 3.24929 3.31171 3.32398 3.35910 3.90118 4.03697 4.36931 4.50467 4.56007 4.72101 4.94829 5.01305 5.13741 5.20548 5.24360 5.35919 5.38040 5.40621 5.52412 5.59110 5.65557 5.68578 5.75338 5.82409 5.85722 5.90047 5.91797 5.98805 6.09463 6.12528 6.13923 6.18270 6.34016 6.40015 6.55392 6.59378 6.64983 6.67383 6.81017 6.92394 7.05267 7.12222 7.18910 7.32672 7.60966 7.85390 7.96917 8.10091 8.34655 8.72996 8.89082 9.51105 10.97144 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.003010 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.458119 B = 9300.923825 C =10590.689385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.125 4.125 11 C 0.129 3.871 12 N -0.612 5.612 13 C 0.704 3.296 14 O -0.584 6.584 15 N -0.686 5.686 16 C 0.179 3.821 17 C -0.137 4.137 18 C -0.100 4.100 19 C -0.151 4.151 20 C -0.058 4.058 21 C -0.114 4.114 22 C -0.083 4.083 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.077 4.077 26 C 0.108 3.892 27 C -0.125 4.125 28 H 0.260 0.740 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.407 0.593 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.106 0.894 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 -13.972 -12.560 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.163 4.163 11 C 0.006 3.994 12 N -0.347 5.347 13 C 0.406 3.594 14 O -0.463 6.463 15 N -0.334 5.334 16 C 0.082 3.918 17 C -0.158 4.158 18 C -0.119 4.119 19 C -0.170 4.170 20 C -0.059 4.059 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.154 4.154 24 C -0.157 4.157 25 C -0.114 4.114 26 C -0.014 4.014 27 C -0.164 4.164 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.246 0.754 35 H 0.165 0.835 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.124 0.876 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.601 -14.440 -12.298 19.777 hybrid contribution 0.214 1.438 -0.058 1.455 sum -5.387 -13.002 -12.356 18.728 Atomic orbital electron populations 1.69825 1.05845 1.26502 1.50942 1.24956 0.94881 0.99077 0.95038 0.86613 0.79940 0.83475 0.78092 1.20743 1.21236 1.19938 1.21203 0.92981 0.90530 1.50263 0.92668 1.18618 0.92618 0.91802 0.93841 1.22039 0.98932 0.94240 1.01109 1.21638 0.91106 0.99687 0.86929 1.47508 1.38105 1.20853 1.28284 1.15841 0.80302 0.83501 0.79734 1.90824 1.45173 1.33596 1.76751 1.42968 1.47429 1.16772 1.26196 1.17608 0.98838 0.86619 0.88716 1.21414 1.01847 0.90371 1.02132 1.20932 0.98955 0.98400 0.93584 1.21014 1.03598 0.96423 0.95986 1.19288 0.99302 0.92110 0.95176 1.19207 1.05796 0.95528 0.91135 1.20399 1.01843 0.93184 0.96552 1.21502 1.00437 0.98783 0.94662 1.21546 0.99033 0.94418 1.00697 1.20437 1.00515 0.98079 0.92390 1.21879 0.91756 0.87935 0.99873 1.21976 1.00154 0.94425 0.99837 0.92960 0.95349 0.91922 0.92947 0.92101 0.90138 0.75403 0.83454 0.86094 0.86576 0.90864 0.90881 0.91350 0.91562 0.91606 0.91576 0.90766 0.90905 0.92738 0.91505 0.87617 0.94247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 11.30 55.43 0.63 -23.24 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.34 8.56 -34.44 -0.29 -13.63 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 10 C -0.12 -2.50 5.30 -26.62 -0.14 -2.64 16 11 C 0.13 2.31 6.42 -3.71 -0.02 2.29 16 12 N -0.61 -10.85 2.98 -178.77 -0.53 -11.38 16 13 C 0.70 12.61 8.10 -86.91 -0.70 11.90 16 14 O -0.58 -11.81 12.93 5.29 0.07 -11.74 16 15 N -0.69 -10.37 4.84 -14.14 -0.07 -10.43 16 16 C 0.18 2.64 6.40 -83.55 -0.53 2.11 16 17 C -0.14 -2.07 8.70 -39.49 -0.34 -2.41 16 18 C -0.10 -1.25 10.04 -39.71 -0.40 -1.65 16 19 C -0.15 -1.71 9.60 -39.41 -0.38 -2.08 16 20 C -0.06 -0.67 5.74 -104.63 -0.60 -1.27 16 21 C -0.11 -1.44 5.75 -104.43 -0.60 -2.04 16 22 C -0.08 -0.89 4.74 -28.05 -0.13 -1.02 16 23 C -0.12 -1.05 5.98 -26.69 -0.16 -1.21 16 24 C -0.12 -0.95 5.98 -26.70 -0.16 -1.11 16 25 C -0.08 -0.66 5.67 -28.06 -0.16 -0.82 16 26 C 0.11 1.85 6.40 -3.93 -0.03 1.83 16 27 C -0.13 -2.65 5.14 -26.83 -0.14 -2.79 16 28 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.44 7.03 -51.93 -0.37 1.08 16 34 H 0.41 5.39 4.94 -40.82 -0.20 5.19 16 35 H 0.15 2.48 5.77 -52.49 -0.30 2.18 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.84 7.43 -51.93 -0.39 0.46 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 46 H 0.05 0.78 5.58 -51.93 -0.29 0.50 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.11 2.49 6.03 -51.93 -0.31 2.18 16 49 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -28.84 373.49 -12.11 -40.96 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.74 Total: 6.78 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -5.08 Total: -12.08 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.03 Total: -45.06 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.74 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.84 -12.11 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334930385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.828 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds