Wall clock time and date at job start Tue Mar 31 2020 16:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99541 * 2 1 4 4 H 1.48499 * 109.47178 * 270.00000 * 3 2 1 5 5 H 1.48502 * 109.47219 * 30.00445 * 3 2 1 6 6 H 1.48503 * 109.46483 * 150.00190 * 3 2 1 7 7 C 1.37874 * 120.00426 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99927 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00294 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.45911 * 175.00100 * 10 9 7 12 12 C 1.53191 * 109.31225 * 181.38673 * 11 10 9 13 13 N 1.46928 * 108.77832 * 305.36854 * 12 11 10 14 14 C 1.34781 * 120.63300 * 233.58938 * 13 12 11 15 15 O 1.21594 * 119.99668 * 355.59709 * 14 13 12 16 16 N 1.34765 * 120.00188 * 175.87821 * 14 13 12 17 17 C 1.39944 * 120.00442 * 187.34215 * 16 14 13 18 18 C 1.38886 * 120.10594 * 32.32172 * 17 16 14 19 19 C 1.37963 * 119.86478 * 179.72849 * 18 17 16 20 20 C 1.38563 * 120.31045 * 0.54613 * 19 18 17 21 21 C 1.38283 * 119.95827 * 359.73504 * 20 19 18 22 22 C 1.38378 * 119.91735 * 359.97438 * 21 20 19 23 23 C 1.51383 * 109.74914 * 179.97438 * 21 20 19 24 24 C 1.54339 * 105.17419 * 342.80364 * 23 21 20 25 25 C 1.51398 * 130.30601 * 179.73079 * 20 19 18 26 26 C 1.46925 * 118.73893 * 53.85725 * 13 12 11 27 27 C 1.53035 * 109.46202 * 295.07280 * 10 9 7 28 28 H 0.97001 * 120.00232 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46770 * 60.00363 * 9 7 2 30 30 H 1.08997 * 109.47072 * 300.00741 * 9 7 2 31 31 H 1.09004 * 109.45894 * 55.03517 * 10 9 7 32 32 H 1.09003 * 109.49657 * 61.44088 * 11 10 9 33 33 H 1.09000 * 109.52901 * 301.35591 * 11 10 9 34 34 H 1.09000 * 109.59102 * 185.57818 * 12 11 10 35 35 H 1.09003 * 109.70409 * 65.22429 * 12 11 10 36 36 H 0.97007 * 120.00315 * 7.34118 * 16 14 13 37 37 H 1.08001 * 120.06447 * 0.02562 * 18 17 16 38 38 H 1.08000 * 119.84823 * 180.27660 * 19 18 17 39 39 H 1.07999 * 119.91809 * 179.97438 * 22 21 20 40 40 H 1.09001 * 110.30314 * 101.72727 * 23 21 20 41 41 H 1.09000 * 110.30385 * 223.87275 * 23 21 20 42 42 H 1.09007 * 110.81871 * 268.14501 * 24 23 21 43 43 H 1.09005 * 110.98885 * 144.68604 * 24 23 21 44 44 H 1.09004 * 110.30193 * 316.14011 * 25 20 19 45 45 H 1.09003 * 110.30138 * 78.29319 * 25 20 19 46 46 H 1.09002 * 109.58687 * 65.92996 * 26 13 12 47 47 H 1.08997 * 109.58969 * 186.35576 * 26 13 12 48 48 H 1.09003 * 109.50054 * 298.56361 * 27 10 9 49 49 H 1.08999 * 109.50208 * 58.66304 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 6 5.5468 -2.6377 -0.1286 12 6 6.0509 -4.0839 -0.1643 13 7 5.5428 -4.7912 1.0190 14 6 6.3860 -5.4422 1.8447 15 8 7.5685 -5.5160 1.5713 16 7 5.9176 -6.0163 2.9704 17 6 6.8094 -6.5576 3.9032 18 6 8.0635 -5.9877 4.0801 19 6 8.9366 -6.5220 5.0050 20 6 8.5726 -7.6317 5.7507 21 6 7.3268 -8.2049 5.5727 22 6 6.4458 -7.6685 4.6503 23 6 7.1741 -9.3940 6.4971 24 6 8.6096 -9.7493 6.9388 25 6 9.3411 -8.3967 6.8073 26 6 4.0972 -4.7805 1.2818 27 6 3.6156 -3.3218 1.3044 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6803 0.8889 30 1 3.8745 -0.6798 -0.8910 31 1 3.5871 -3.1745 -0.8447 32 1 5.9831 -2.1214 0.7265 33 1 5.8367 -2.1286 -1.0478 34 1 7.1408 -4.0913 -0.1544 35 1 5.6904 -4.5766 -1.0673 36 1 4.9622 -6.0543 3.1342 37 1 8.3528 -5.1251 3.4981 38 1 9.9101 -6.0759 5.1456 39 1 5.4730 -8.1165 4.5109 40 1 6.5678 -9.1251 7.3621 41 1 6.7239 -10.2317 5.9645 42 1 9.0470 -10.4931 6.2727 43 1 8.6250 -10.0994 7.9710 44 1 10.3710 -8.5536 6.4866 45 1 9.3170 -7.8596 7.7555 46 1 3.5786 -5.3273 0.4944 47 1 3.8977 -5.2476 2.2462 48 1 4.0701 -2.7990 2.1460 49 1 2.5305 -3.2998 1.4049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335470550.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:11 Heat of formation + Delta-G solvation = -29.350280 kcal Electronic energy + Delta-G solvation = -27451.915861 eV Core-core repulsion = 23763.215938 eV Total energy + Delta-G solvation = -3688.699922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02417 -40.75884 -39.07026 -37.14296 -35.79937 -34.87909 -33.94026 -32.29873 -31.82253 -30.39427 -29.13445 -28.02367 -26.22861 -24.33005 -23.70647 -23.64249 -22.19000 -21.66054 -21.08269 -20.44893 -19.45709 -18.79825 -17.99084 -16.90314 -16.78219 -16.50032 -16.34913 -16.27831 -15.77055 -15.37546 -15.27815 -14.95277 -14.64069 -14.59874 -14.28234 -14.22576 -14.14594 -13.68691 -13.65508 -13.46668 -13.10896 -12.95472 -12.83228 -12.47080 -12.42862 -12.20927 -12.10901 -12.00988 -11.97711 -11.75165 -11.64048 -11.41528 -11.30924 -11.13280 -10.93911 -10.93251 -10.71676 -9.76049 -9.65058 -8.85590 -8.25657 -6.26780 0.31604 0.43287 1.34909 1.37260 1.47168 1.47752 1.95804 2.37162 2.70212 2.82024 3.10139 3.55925 3.69766 3.84470 3.93525 4.00020 4.07265 4.15568 4.22267 4.23899 4.34063 4.37713 4.41673 4.48123 4.56832 4.62402 4.75703 4.77881 4.85288 4.89394 4.90526 4.98722 5.02503 5.06235 5.07564 5.17352 5.20135 5.22755 5.30130 5.35760 5.37698 5.39999 5.43214 5.55513 5.59369 5.70845 5.72336 5.73527 5.88418 6.09920 6.34117 6.74108 6.80733 7.35591 7.37102 8.90312 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023239 B = 0.002212 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.583421 B =12655.508830 C =12939.066980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.513 4.513 8 H 0.044 0.956 9 C -0.008 4.008 10 C -0.069 4.069 11 C -0.123 4.123 12 C 0.134 3.866 13 N -0.618 5.618 14 C 0.704 3.296 15 O -0.612 6.612 16 N -0.678 5.678 17 C 0.154 3.846 18 C -0.143 4.143 19 C -0.097 4.097 20 C -0.128 4.128 21 C -0.086 4.086 22 C -0.141 4.141 23 C -0.080 4.080 24 C -0.116 4.116 25 C -0.080 4.080 26 C 0.115 3.885 27 C -0.115 4.115 28 H 0.263 0.737 29 H 0.011 0.989 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.418 0.582 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.052 0.948 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.816 -19.614 13.239 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.551 4.551 8 H 0.063 0.937 9 C -0.046 4.046 10 C -0.088 4.088 11 C -0.161 4.161 12 C 0.011 3.989 13 N -0.353 5.353 14 C 0.406 3.594 15 O -0.492 6.492 16 N -0.328 5.328 17 C 0.059 3.941 18 C -0.164 4.164 19 C -0.115 4.115 20 C -0.129 4.129 21 C -0.086 4.086 22 C -0.162 4.162 23 C -0.117 4.117 24 C -0.154 4.154 25 C -0.116 4.116 26 C -0.007 4.007 27 C -0.153 4.153 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.259 0.741 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.113 0.887 48 H 0.070 0.930 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.464 -19.498 12.976 29.215 hybrid contribution -0.827 1.493 -0.404 1.754 sum 16.637 -18.004 12.572 27.550 Atomic orbital electron populations 1.70050 1.08030 1.27779 1.53351 1.25913 0.95486 1.03071 0.94824 0.85800 0.79451 0.79276 0.78937 1.19468 1.21440 1.17599 1.21453 0.91702 0.93081 1.48890 0.93743 1.19590 0.94228 0.94775 0.95976 1.20916 0.94072 0.96255 0.97562 1.21968 0.95555 0.96002 1.02566 1.21538 0.99814 0.91294 0.86233 1.47422 1.07306 1.53603 1.27010 1.15918 0.84696 0.78700 0.80058 1.90885 1.16219 1.66250 1.75879 1.42684 1.10435 1.60731 1.18994 1.17516 0.91124 0.93962 0.91520 1.21012 0.94492 1.01308 0.99578 1.20650 0.99721 0.96045 0.95124 1.20944 0.96647 0.96411 0.98863 1.20738 0.93741 0.97978 0.96186 1.20451 1.01811 0.94852 0.99047 1.21132 0.98801 0.94240 0.97486 1.22326 0.93796 0.96225 1.03031 1.21101 0.99011 0.95081 0.96450 1.21940 0.78862 0.97325 1.02604 1.21857 1.01290 0.94552 0.97587 0.92786 0.97084 0.96692 0.91893 0.92815 0.89765 0.89795 0.90107 0.74138 0.86902 0.84961 0.84021 0.88947 0.89773 0.90815 0.88485 0.90229 0.89359 0.89624 0.88656 0.92965 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.39 13.96 21.45 0.30 -58.09 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.94 44.01 27.47 68.60 1.88 45.89 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 7 C -0.51 -27.96 8.94 25.60 0.23 -27.73 16 8 H 0.04 2.61 7.30 -2.91 -0.02 2.59 16 9 C -0.01 -0.37 3.52 29.85 0.10 -0.26 16 10 C -0.07 -2.44 2.10 -10.77 -0.02 -2.46 16 11 C -0.12 -3.60 5.36 30.67 0.16 -3.44 16 12 C 0.13 3.58 6.42 86.36 0.55 4.13 16 13 N -0.62 -16.60 2.97 -836.05 -2.48 -19.08 16 14 C 0.70 20.79 8.01 179.06 1.43 22.22 16 15 O -0.61 -22.09 13.50 -4.01 -0.05 -22.15 16 16 N -0.68 -16.36 5.25 -317.28 -1.67 -18.03 16 17 C 0.15 3.86 6.28 38.12 0.24 4.10 16 18 C -0.14 -3.93 8.65 22.36 0.19 -3.74 16 19 C -0.10 -2.20 10.03 22.28 0.22 -1.98 16 20 C -0.13 -2.45 6.14 -19.55 -0.12 -2.57 16 21 C -0.09 -1.57 6.13 -19.60 -0.12 -1.69 16 22 C -0.14 -2.86 9.95 22.42 0.22 -2.63 16 23 C -0.08 -0.92 6.77 30.52 0.21 -0.71 16 24 C -0.12 -1.08 7.08 31.50 0.22 -0.85 16 25 C -0.08 -0.98 6.77 30.53 0.21 -0.78 16 26 C 0.12 2.75 6.45 86.51 0.56 3.31 16 27 C -0.11 -3.66 5.21 30.82 0.16 -3.50 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 30 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.08 2.36 7.03 -2.39 -0.02 2.35 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.42 7.67 6.29 -92.70 -0.58 7.09 16 37 H 0.11 3.58 6.43 -2.91 -0.02 3.56 16 38 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.10 0.51 8.14 -2.38 -0.02 0.50 16 44 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.10 1.75 5.58 -2.39 -0.01 1.73 16 48 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.07 2.51 6.91 -2.39 -0.02 2.49 16 Total: -1.00 -70.98 379.62 3.21 -67.76 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.31 Total: 21.61 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.92 Total: -17.91 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -3.85 Total: -95.20 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -70.98 3.21 -67.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335470550.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.415 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds