Wall clock time and date at job start Tue Mar 31 2020 14:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35678 * 116.99730 * 2 1 4 4 C 1.38920 * 119.68157 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.10912 * 180.02562 * 4 3 2 6 6 C 1.38825 * 118.48801 * 359.97438 * 5 4 3 7 7 C 1.38048 * 119.28819 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.58402 * 180.02562 * 7 6 5 9 9 F 1.39905 * 109.47132 * 59.99776 * 8 7 6 10 10 F 1.39900 * 109.47126 * 300.00112 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 8 7 6 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 8 7 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 8 14 14 C 1.52997 * 109.46950 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47312 * 300.00123 * 14 13 12 16 16 C 1.52997 * 109.47169 * 60.00159 * 14 13 12 17 17 C 1.53003 * 109.47071 * 180.02562 * 14 13 12 18 18 C 1.50704 * 109.47153 * 179.97438 * 17 14 13 19 19 H 1.07997 * 119.99780 * 359.97438 * 18 17 14 20 20 C 1.37871 * 119.99793 * 180.02562 * 18 17 14 21 21 N 1.31521 * 120.00052 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00014 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46885 * 90.00107 * 22 20 18 24 24 H 1.48502 * 109.47132 * 209.99967 * 22 20 18 25 25 H 1.48495 * 109.47046 * 330.00178 * 22 20 18 26 26 N 1.31963 * 120.83701 * 0.27507 * 7 6 5 27 27 H 1.08994 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46913 * 300.00722 * 1 2 3 29 29 H 1.09004 * 109.46677 * 60.00043 * 1 2 3 30 30 H 1.07997 * 120.44641 * 0.03288 * 4 3 2 31 31 H 1.07998 * 120.75278 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.35837 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47153 * 59.99773 * 11 8 7 34 34 H 1.09001 * 109.46832 * 299.99964 * 11 8 7 35 35 H 1.00908 * 110.99847 * 56.04959 * 12 11 8 36 36 H 1.08995 * 109.47167 * 300.00240 * 13 12 11 37 37 H 1.09003 * 109.46442 * 60.00214 * 13 12 11 38 38 H 1.09002 * 109.47029 * 60.00405 * 15 14 13 39 39 H 1.09000 * 109.47152 * 180.02562 * 15 14 13 40 40 H 1.08993 * 109.47356 * 300.00089 * 15 14 13 41 41 H 1.09005 * 109.46874 * 60.00300 * 16 14 13 42 42 H 1.09000 * 109.47103 * 179.97438 * 16 14 13 43 43 H 1.09002 * 109.47446 * 299.99763 * 16 14 13 44 44 H 1.08995 * 109.47051 * 300.00167 * 17 14 13 45 45 H 1.09003 * 109.46901 * 60.00330 * 17 14 13 46 46 H 0.97005 * 119.99618 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0005 5 6 4.0485 2.5132 0.0000 6 6 3.2505 3.6492 0.0005 7 6 1.8771 3.5097 0.0000 8 6 1.0045 4.7384 -0.0001 9 9 1.2727 5.5008 -1.1420 10 9 1.2717 5.5002 1.1425 11 6 -0.4669 4.3190 -0.0001 12 7 -1.3174 5.5167 0.0005 13 6 -2.7404 5.1518 -0.0001 14 6 -3.5927 6.4225 -0.0001 15 6 -3.2782 7.2475 1.2494 16 6 -3.2773 7.2481 -1.2490 17 6 -5.0748 6.0425 -0.0002 18 6 -5.9142 7.2941 0.0005 19 1 -5.4382 8.2635 0.0013 20 6 -7.2898 7.2015 0.0011 21 7 -7.8694 6.0208 0.0017 22 14 -8.3304 8.7527 0.0026 23 1 -8.6068 9.1647 -1.3970 24 1 -9.6128 8.4879 0.7032 25 1 -7.5989 9.8388 0.7029 26 7 1.3186 2.3141 0.0044 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0229 0.3696 -0.0015 31 1 5.1254 2.5947 0.0000 32 1 3.6993 4.6315 0.0006 33 1 -0.6755 3.7252 0.8899 34 1 -0.6754 3.7253 -0.8901 35 1 -1.0979 6.1165 -0.7807 36 1 -2.9645 4.5645 -0.8905 37 1 -2.9649 4.5633 0.8895 38 1 -2.2224 7.5183 1.2498 39 1 -3.8857 8.1525 1.2496 40 1 -3.5029 6.6594 2.1392 41 1 -3.5014 6.6603 -2.1393 42 1 -3.8848 8.1531 -1.2492 43 1 -2.2215 7.5188 -1.2486 44 1 -5.2991 5.4546 -0.8901 45 1 -5.2991 5.4546 0.8899 46 1 -8.8373 5.9557 0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353098138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:55 Heat of formation + Delta-G solvation = -107.906607 kcal Electronic energy + Delta-G solvation = -28428.888006 eV Core-core repulsion = 24182.552096 eV Total energy + Delta-G solvation = -4246.335910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.13240 -47.10137 -41.09325 -38.38233 -37.68054 -34.73397 -33.23903 -32.20026 -31.65133 -28.85161 -27.60953 -26.82554 -26.29733 -25.33397 -23.94544 -23.33518 -22.20388 -21.63311 -18.93451 -18.19652 -17.74626 -17.57264 -16.61422 -16.47802 -16.35099 -16.26778 -16.03631 -15.11597 -14.75197 -14.58068 -14.11071 -14.06181 -13.90790 -13.69709 -13.64868 -13.43665 -13.12431 -13.06672 -12.64133 -12.51033 -12.25596 -12.05839 -11.98038 -11.75979 -11.59473 -11.39898 -10.96415 -10.85178 -10.75709 -10.47643 -10.46084 -10.25909 -10.16041 -10.04390 -9.66754 -9.03881 -9.01022 -8.82103 -8.29946 -8.21350 -5.94674 -3.94517 0.44108 0.77652 2.60818 2.98357 3.14367 3.34838 3.41390 3.44690 3.73371 3.97527 4.34080 4.49975 4.50833 4.54875 4.56389 4.65801 4.80893 4.98219 5.01983 5.04688 5.35800 5.40659 5.41287 5.49104 5.59129 5.63330 5.72359 5.78245 5.84269 6.00063 6.23024 6.33545 6.52282 6.69961 6.74552 6.79510 6.86453 7.11626 7.22903 7.24967 7.28948 7.35357 7.56654 7.71944 7.86883 8.05733 8.50227 9.10760 9.68221 11.17047 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002531 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.406262 B =11058.541837 C =12029.299706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.305 6.305 3 C 0.324 3.676 4 C -0.172 4.172 5 C -0.040 4.040 6 C -0.171 4.171 7 C 0.107 3.893 8 C 0.354 3.646 9 F -0.188 7.188 10 F -0.175 7.175 11 C 0.037 3.963 12 N -0.685 5.685 13 C 0.073 3.927 14 C -0.058 4.058 15 C -0.117 4.117 16 C -0.130 4.130 17 C 0.034 3.966 18 C -0.506 4.506 19 H 0.059 0.941 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.274 1.274 26 N -0.511 5.511 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.344 0.656 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.878 -10.582 -0.794 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.212 6.212 3 C 0.145 3.855 4 C -0.193 4.193 5 C -0.065 4.065 6 C -0.192 4.192 7 C -0.031 4.031 8 C 0.316 3.684 9 F -0.169 7.169 10 F -0.156 7.156 11 C -0.093 4.093 12 N -0.318 5.318 13 C -0.055 4.055 14 C -0.059 4.059 15 C -0.174 4.174 16 C -0.188 4.188 17 C -0.003 4.003 18 C -0.544 4.544 19 H 0.077 0.923 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.716 3.284 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.199 1.199 26 N -0.235 5.235 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 23.917 -10.899 -0.101 26.283 hybrid contribution -0.123 0.691 -0.941 1.174 sum 23.794 -10.207 -1.042 25.912 Atomic orbital electron populations 1.22969 0.76421 1.03480 1.03004 1.86259 1.23524 1.23788 1.87588 1.19759 0.89383 0.84382 0.92023 1.21236 0.92061 0.99934 1.06050 1.21444 1.00940 0.90731 0.93425 1.21786 0.93394 1.00993 1.03025 1.20951 0.92110 0.91660 0.98372 1.19265 0.95208 0.81474 0.72406 1.93041 1.95251 1.77546 1.51046 1.93081 1.95113 1.77186 1.50204 1.22676 0.88004 0.94160 1.04508 1.60563 1.05192 1.15455 1.50547 1.22128 0.84992 0.98402 0.99991 1.20639 0.97281 0.92760 0.95180 1.21609 0.99432 0.99900 0.96490 1.21783 0.98772 1.01052 0.97155 1.19125 0.87546 0.96743 0.96933 1.21237 0.90769 0.92900 1.49490 0.92253 1.25014 0.98210 0.95685 0.95720 1.69971 1.09701 1.22681 1.51472 0.86659 0.79931 0.83830 0.77979 1.20840 1.21394 1.19895 1.66866 1.40961 0.97900 1.17747 0.88214 0.91821 0.91931 0.83403 0.83202 0.83745 0.87852 0.92138 0.83643 0.95508 0.91264 0.93790 0.92611 0.94132 0.94059 0.91592 0.94741 0.96896 0.96627 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -2.98 10.48 -18.74 -0.20 -3.18 16 3 C 0.32 3.31 7.49 -17.12 -0.13 3.18 16 4 C -0.17 -1.32 10.04 -39.27 -0.39 -1.71 16 5 C -0.04 -0.27 10.17 -39.31 -0.40 -0.67 16 6 C -0.17 -1.53 9.62 -39.43 -0.38 -1.91 16 7 C 0.11 1.21 6.17 -82.61 -0.51 0.70 16 8 C 0.35 4.51 1.93 -27.89 -0.05 4.45 16 9 F -0.19 -2.47 16.45 2.25 0.04 -2.43 16 10 F -0.18 -2.45 16.89 2.25 0.04 -2.42 16 11 C 0.04 0.50 4.44 -3.83 -0.02 0.48 16 12 N -0.68 -10.54 5.64 -113.78 -0.64 -11.18 16 13 C 0.07 1.27 4.65 -3.82 -0.02 1.26 16 14 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 15 C -0.12 -2.32 8.06 37.16 0.30 -2.02 16 16 C -0.13 -2.47 7.89 37.16 0.29 -2.17 16 17 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 18 C -0.51 -13.89 7.65 -34.44 -0.26 -14.15 16 19 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 20 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 22 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 26 N -0.51 -5.86 7.85 -9.55 -0.07 -5.93 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 30 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.15 0.49 8.06 -52.49 -0.42 0.06 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.10 1.39 8.05 -51.93 -0.42 0.97 16 34 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 35 H 0.34 5.22 6.29 -39.29 -0.25 4.98 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.04 0.80 7.60 -51.93 -0.39 0.41 16 39 H 0.05 1.18 6.61 -51.93 -0.34 0.83 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 43 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -31.14 381.21 -7.21 -38.35 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.01 Total: 0.82 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -0.82 Total: -10.29 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.02 Total: -43.30 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -0.20 Total: -3.18 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.08 Total: -4.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.14 -7.21 -38.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353098138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.559 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds