Wall clock time and date at job start Tue Mar 31 2020 16:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48502 * 109.47012 * 240.00011 * 3 2 1 5 5 H 1.48505 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47243 * 119.99631 * 3 2 1 7 7 C 1.37876 * 120.00557 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47353 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47382 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00071 * 179.97438 * 12 11 10 14 14 O 1.21593 * 120.00331 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00205 * 180.02562 * 13 12 11 16 16 C 1.39948 * 119.99997 * 185.06004 * 15 13 12 17 17 C 1.38985 * 119.85142 * 269.51342 * 16 15 13 18 18 C 1.38120 * 119.72909 * 179.97438 * 17 16 15 19 19 C 1.39023 * 119.89168 * 0.02562 * 18 17 16 20 20 C 1.38421 * 120.43635 * 359.97438 * 19 18 17 21 21 C 1.38356 * 119.79292 * 0.02562 * 20 19 18 22 22 C 1.51359 * 109.66300 * 179.97438 * 21 20 19 23 23 C 1.54342 * 105.25004 * 17.22576 * 22 21 20 24 24 C 1.51395 * 130.42277 * 180.02562 * 20 19 18 25 25 C 1.51384 * 109.75577 * 180.02562 * 18 17 16 26 26 C 1.54347 * 105.17146 * 342.80787 * 25 18 17 27 27 C 1.51361 * 130.48261 * 359.97024 * 17 16 15 28 28 H 0.97000 * 120.00635 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47232 * 60.00179 * 9 7 2 30 30 H 1.09008 * 109.47295 * 299.99950 * 9 7 2 31 31 H 1.09000 * 109.46876 * 60.00013 * 10 9 7 32 32 H 1.08992 * 109.47278 * 300.00304 * 10 9 7 33 33 H 1.09000 * 109.46973 * 60.00250 * 11 10 9 34 34 H 1.08999 * 109.47138 * 300.00747 * 11 10 9 35 35 H 0.97001 * 119.99878 * 0.02562 * 12 11 10 36 36 H 0.97001 * 119.99728 * 5.05074 * 15 13 12 37 37 H 1.07998 * 119.86189 * 180.02562 * 19 18 17 38 38 H 1.09001 * 110.30071 * 258.25146 * 22 21 20 39 39 H 1.08998 * 110.30234 * 136.19891 * 22 21 20 40 40 H 1.08996 * 110.82625 * 91.83573 * 23 22 21 41 41 H 1.09002 * 110.82746 * 215.39971 * 23 22 21 42 42 H 1.09000 * 110.30270 * 43.88781 * 24 20 19 43 43 H 1.09002 * 110.30023 * 281.73824 * 24 20 19 44 44 H 1.09004 * 110.30319 * 101.72906 * 25 18 17 45 45 H 1.08998 * 110.30668 * 223.88586 * 25 18 17 46 46 H 1.09000 * 110.82399 * 144.56670 * 26 25 18 47 47 H 1.09001 * 110.82400 * 267.91984 * 26 25 18 48 48 H 1.09000 * 110.30356 * 316.10565 * 27 17 16 49 49 H 1.08998 * 110.30866 * 78.25679 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1005 0.0006 13 6 1.9834 -7.3711 0.0015 14 8 0.7880 -7.5935 0.0024 15 7 2.8593 -8.3956 0.0014 16 6 2.3963 -9.7120 -0.1045 17 6 2.0971 -10.4347 1.0444 18 6 1.6398 -11.7336 0.9369 19 6 1.4820 -12.3109 -0.3179 20 6 1.7796 -11.5922 -1.4629 21 6 2.2378 -10.2910 -1.3581 22 6 2.4900 -9.7270 -2.7399 23 6 1.7269 -10.6594 -3.7044 24 6 1.6928 -11.9891 -2.9213 25 6 1.3859 -12.3025 2.3166 26 6 2.1477 -11.3717 3.2838 27 6 2.1829 -10.0407 2.5033 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8721 -3.6042 0.8905 32 1 2.8721 -3.6042 -0.8893 33 1 0.8536 -5.0451 -0.8886 34 1 0.8541 -5.0445 0.8913 35 1 3.3862 -5.9232 0.0002 36 1 3.8105 -8.2204 0.0747 37 1 1.1240 -13.3264 -0.4014 38 1 3.5565 -9.7407 -2.9651 39 1 2.1023 -8.7108 -2.8102 40 1 0.7175 -10.2893 -3.8838 41 1 2.2705 -10.7759 -4.6421 42 1 0.7596 -12.5182 -3.1144 43 1 2.5449 -12.6112 -3.1953 44 1 0.3192 -12.2895 2.5407 45 1 1.7751 -13.3184 2.3843 46 1 1.6031 -11.2574 4.2211 47 1 3.1558 -11.7438 3.4663 48 1 3.1160 -9.5121 2.6981 49 1 1.3308 -9.4191 2.7781 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353915608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:14 Heat of formation + Delta-G solvation = -30.563688 kcal Electronic energy + Delta-G solvation = -27280.344281 eV Core-core repulsion = 23591.591741 eV Total energy + Delta-G solvation = -3688.752539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05371 -39.46948 -37.90093 -35.73281 -34.78274 -33.40135 -33.21825 -31.36141 -30.08389 -28.74025 -28.07075 -26.73753 -25.72099 -23.51366 -22.69926 -21.39959 -20.67163 -20.54172 -20.16474 -19.96616 -18.23392 -16.96420 -16.61982 -16.25333 -15.77415 -15.75265 -15.22618 -15.07712 -14.76387 -14.40215 -13.96265 -13.89973 -13.66483 -13.13002 -12.95594 -12.83368 -12.65458 -12.63117 -12.27093 -11.82994 -11.81083 -11.60288 -11.50814 -11.48930 -11.40477 -11.37813 -11.11090 -10.88284 -10.71653 -10.61913 -10.61051 -10.11066 -9.85241 -9.44759 -9.37712 -9.13548 -8.69265 -8.66583 -8.36506 -8.35871 -6.01125 -4.04394 1.11665 1.18207 2.81890 3.32175 3.35204 3.36974 3.38825 3.46717 3.97743 4.30797 4.39064 4.39486 4.45901 4.52480 4.76731 4.80213 4.87368 4.91456 5.13123 5.29556 5.34453 5.37147 5.41221 5.47169 5.50665 5.54917 5.57928 5.63898 5.66246 5.69916 5.77808 5.81673 5.87594 5.95677 5.97329 6.01810 6.18941 6.23958 6.30928 6.48070 6.51911 6.55932 6.62729 6.77183 6.97853 7.02107 7.05501 7.64146 7.77251 7.97616 8.12598 8.38448 8.77416 9.02112 9.59650 11.10140 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017083 B = 0.002245 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.693040 B =12468.133868 C =13598.197942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.136 3.864 12 N -0.740 5.740 13 C 0.703 3.297 14 O -0.580 6.580 15 N -0.707 5.707 16 C 0.184 3.816 17 C -0.084 4.084 18 C -0.096 4.096 19 C -0.093 4.093 20 C -0.095 4.095 21 C -0.088 4.088 22 C -0.078 4.078 23 C -0.120 4.120 24 C -0.077 4.077 25 C -0.078 4.078 26 C -0.120 4.120 27 C -0.077 4.077 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.394 0.606 36 H 0.400 0.600 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.855 -28.988 -0.513 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.394 5.394 13 C 0.404 3.596 14 O -0.457 6.457 15 N -0.361 5.361 16 C 0.092 3.908 17 C -0.086 4.086 18 C -0.096 4.096 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.089 4.089 22 C -0.115 4.115 23 C -0.157 4.157 24 C -0.114 4.114 25 C -0.115 4.115 26 C -0.157 4.157 27 C -0.114 4.114 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.227 0.773 36 H 0.236 0.764 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.556 -28.998 -0.526 29.735 hybrid contribution 1.306 1.236 0.040 1.798 sum 7.861 -27.762 -0.486 28.858 Atomic orbital electron populations 1.69952 1.06058 1.26808 1.50456 1.25029 0.94854 0.99283 0.95285 0.86645 0.79561 0.83118 0.78575 1.20253 1.21270 1.20248 1.21163 0.92936 0.90953 1.51064 0.92714 1.19022 0.93844 0.90781 0.97685 1.21887 0.99784 0.93285 1.00826 1.21520 0.91264 0.84076 1.01899 1.45370 1.10501 1.04271 1.79277 1.16004 0.85190 0.80545 0.77884 1.90948 1.13905 1.83865 1.56942 1.42428 1.09241 1.03375 1.81078 1.16317 1.00978 0.83169 0.90313 1.20617 0.98901 0.94364 0.94721 1.20466 1.00020 0.94672 0.94492 1.20161 1.01204 0.99660 0.90039 1.20384 1.00074 0.94131 0.95009 1.20683 0.99242 0.95054 0.93932 1.20949 1.00594 0.99870 0.90051 1.22297 1.01168 0.94475 0.97810 1.21012 1.02386 0.98021 0.90004 1.21016 1.01064 0.99164 0.90253 1.22296 1.00742 0.94644 0.98023 1.20952 1.02763 0.97836 0.89856 0.92857 0.96260 0.96253 0.92768 0.92753 0.91959 0.91957 0.77295 0.76384 0.86297 0.90354 0.90667 0.90769 0.90471 0.90681 0.90271 0.90155 0.90746 0.90479 0.90980 0.90915 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.14 2.45 5.67 -4.04 -0.02 2.43 16 12 N -0.74 -10.91 5.56 -65.23 -0.36 -11.27 16 13 C 0.70 11.24 8.53 -86.92 -0.74 10.50 16 14 O -0.58 -12.01 16.32 5.28 0.09 -11.93 16 15 N -0.71 -8.68 5.09 -14.16 -0.07 -8.76 16 16 C 0.18 2.40 5.28 -83.60 -0.44 1.96 16 17 C -0.08 -1.04 6.10 -104.06 -0.63 -1.67 16 18 C -0.10 -1.05 6.16 -104.04 -0.64 -1.69 16 19 C -0.09 -0.96 10.06 -39.22 -0.39 -1.36 16 20 C -0.10 -1.04 6.14 -104.17 -0.64 -1.68 16 21 C -0.09 -1.07 6.11 -103.98 -0.64 -1.71 16 22 C -0.08 -0.81 6.67 -26.86 -0.18 -0.99 16 23 C -0.12 -1.03 7.08 -25.32 -0.18 -1.21 16 24 C -0.08 -0.64 6.77 -26.83 -0.18 -0.82 16 25 C -0.08 -0.64 6.77 -26.84 -0.18 -0.83 16 26 C -0.12 -0.94 7.08 -25.33 -0.18 -1.12 16 27 C -0.08 -0.81 6.68 -26.86 -0.18 -0.99 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 4.56 8.49 -40.82 -0.35 4.22 16 36 H 0.40 3.61 8.84 -40.82 -0.36 3.25 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 399.02 15.07 6.01 6.01 Total: -1.00 -34.33 399.02 -12.82 -47.16 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.28 Total: 3.09 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -5.92 Total: -14.60 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.30 Total: -46.24 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.33 -12.82 -47.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353915608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.593 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds