Wall clock time and date at job start Tue Mar 31 2020 16:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48502 * 109.47012 * 240.00011 * 3 2 1 5 5 H 1.48505 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47243 * 119.99631 * 3 2 1 7 7 C 1.37876 * 120.00557 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47353 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47382 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00071 * 179.97438 * 12 11 10 14 14 O 1.21593 * 120.00331 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00205 * 180.02562 * 13 12 11 16 16 C 1.39948 * 119.99997 * 185.06004 * 15 13 12 17 17 C 1.38985 * 119.85142 * 269.51342 * 16 15 13 18 18 C 1.38120 * 119.72909 * 179.97438 * 17 16 15 19 19 C 1.39023 * 119.89168 * 0.02562 * 18 17 16 20 20 C 1.38421 * 120.43635 * 359.97438 * 19 18 17 21 21 C 1.38356 * 119.79292 * 0.02562 * 20 19 18 22 22 C 1.51359 * 109.66300 * 179.97438 * 21 20 19 23 23 C 1.54342 * 105.25004 * 17.22576 * 22 21 20 24 24 C 1.51395 * 130.42277 * 180.02562 * 20 19 18 25 25 C 1.51384 * 109.75577 * 180.02562 * 18 17 16 26 26 C 1.54347 * 105.17146 * 342.80787 * 25 18 17 27 27 C 1.51361 * 130.48261 * 359.97024 * 17 16 15 28 28 H 0.97000 * 120.00635 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47232 * 60.00179 * 9 7 2 30 30 H 1.09008 * 109.47295 * 299.99950 * 9 7 2 31 31 H 1.09000 * 109.46876 * 60.00013 * 10 9 7 32 32 H 1.08992 * 109.47278 * 300.00304 * 10 9 7 33 33 H 1.09000 * 109.46973 * 60.00250 * 11 10 9 34 34 H 1.08999 * 109.47138 * 300.00747 * 11 10 9 35 35 H 0.97001 * 119.99878 * 0.02562 * 12 11 10 36 36 H 0.97001 * 119.99728 * 5.05074 * 15 13 12 37 37 H 1.07998 * 119.86189 * 180.02562 * 19 18 17 38 38 H 1.09001 * 110.30071 * 258.25146 * 22 21 20 39 39 H 1.08998 * 110.30234 * 136.19891 * 22 21 20 40 40 H 1.08996 * 110.82625 * 91.83573 * 23 22 21 41 41 H 1.09002 * 110.82746 * 215.39971 * 23 22 21 42 42 H 1.09000 * 110.30270 * 43.88781 * 24 20 19 43 43 H 1.09002 * 110.30023 * 281.73824 * 24 20 19 44 44 H 1.09004 * 110.30319 * 101.72906 * 25 18 17 45 45 H 1.08998 * 110.30668 * 223.88586 * 25 18 17 46 46 H 1.09000 * 110.82399 * 144.56670 * 26 25 18 47 47 H 1.09001 * 110.82400 * 267.91984 * 26 25 18 48 48 H 1.09000 * 110.30356 * 316.10565 * 27 17 16 49 49 H 1.08998 * 110.30866 * 78.25679 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1005 0.0006 13 6 1.9834 -7.3711 0.0015 14 8 0.7880 -7.5935 0.0024 15 7 2.8593 -8.3956 0.0014 16 6 2.3963 -9.7120 -0.1045 17 6 2.0971 -10.4347 1.0444 18 6 1.6398 -11.7336 0.9369 19 6 1.4820 -12.3109 -0.3179 20 6 1.7796 -11.5922 -1.4629 21 6 2.2378 -10.2910 -1.3581 22 6 2.4900 -9.7270 -2.7399 23 6 1.7269 -10.6594 -3.7044 24 6 1.6928 -11.9891 -2.9213 25 6 1.3859 -12.3025 2.3166 26 6 2.1477 -11.3717 3.2838 27 6 2.1829 -10.0407 2.5033 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8721 -3.6042 0.8905 32 1 2.8721 -3.6042 -0.8893 33 1 0.8536 -5.0451 -0.8886 34 1 0.8541 -5.0445 0.8913 35 1 3.3862 -5.9232 0.0002 36 1 3.8105 -8.2204 0.0747 37 1 1.1240 -13.3264 -0.4014 38 1 3.5565 -9.7407 -2.9651 39 1 2.1023 -8.7108 -2.8102 40 1 0.7175 -10.2893 -3.8838 41 1 2.2705 -10.7759 -4.6421 42 1 0.7596 -12.5182 -3.1144 43 1 2.5449 -12.6112 -3.1953 44 1 0.3192 -12.2895 2.5407 45 1 1.7751 -13.3184 2.3843 46 1 1.6031 -11.2574 4.2211 47 1 3.1558 -11.7438 3.4663 48 1 3.1160 -9.5121 2.6981 49 1 1.3308 -9.4191 2.7781 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353915608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:13 Heat of formation + Delta-G solvation = -50.053927 kcal Electronic energy + Delta-G solvation = -27281.189441 eV Core-core repulsion = 23591.591741 eV Total energy + Delta-G solvation = -3689.597700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98070 -40.65013 -38.63708 -37.17525 -36.05033 -35.20916 -34.09632 -33.07541 -31.16705 -29.48593 -28.81621 -28.51067 -26.60304 -25.13179 -23.71595 -22.49702 -22.31652 -21.31835 -21.24370 -20.77782 -19.52295 -18.57455 -17.82536 -17.49725 -16.65584 -16.60448 -16.47894 -16.46595 -15.96376 -15.78289 -15.43337 -15.34088 -14.47137 -14.26325 -13.84960 -13.75940 -13.70606 -13.66913 -13.51543 -13.41522 -13.29700 -12.72866 -12.56091 -12.50780 -12.41648 -12.20153 -12.17439 -12.10768 -12.08487 -11.90804 -11.68460 -11.68177 -11.37241 -11.29811 -11.17823 -10.58378 -10.55112 -9.97434 -9.56449 -9.17481 -8.19485 -6.31314 0.23353 0.34059 1.41363 1.44692 1.52426 1.64878 2.05031 2.41844 2.62597 3.14115 3.20698 3.25813 3.60716 3.64754 3.81892 4.10172 4.12587 4.13380 4.15403 4.19887 4.20498 4.39009 4.49861 4.53755 4.67503 4.70528 4.76897 4.82229 4.83943 4.86922 4.92571 4.93501 4.96292 4.99941 5.08003 5.10237 5.15525 5.23054 5.27157 5.30360 5.42266 5.43855 5.47138 5.51900 5.63096 5.69455 5.69978 5.83460 5.85859 6.08913 6.21928 6.85717 7.01274 7.38266 7.53014 8.92564 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017083 B = 0.002245 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.693040 B =12468.133868 C =13598.197942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.099 4.099 11 C 0.151 3.849 12 N -0.726 5.726 13 C 0.705 3.295 14 O -0.631 6.631 15 N -0.685 5.685 16 C 0.155 3.845 17 C -0.108 4.108 18 C -0.103 4.103 19 C -0.098 4.098 20 C -0.103 4.103 21 C -0.111 4.111 22 C -0.077 4.077 23 C -0.118 4.118 24 C -0.072 4.072 25 C -0.076 4.076 26 C -0.112 4.112 27 C -0.079 4.079 28 H 0.263 0.737 29 H -0.009 1.009 30 H -0.008 1.008 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.413 0.587 36 H 0.417 0.583 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.217 -30.600 -0.654 32.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.137 4.137 11 C 0.026 3.974 12 N -0.382 5.382 13 C 0.405 3.595 14 O -0.511 6.511 15 N -0.340 5.340 16 C 0.063 3.937 17 C -0.110 4.110 18 C -0.104 4.104 19 C -0.116 4.116 20 C -0.103 4.103 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.155 4.155 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.149 4.149 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.249 0.751 36 H 0.255 0.745 37 H 0.162 0.838 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.100 0.900 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.095 0.905 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.000 -30.638 -0.666 31.939 hybrid contribution 0.542 1.672 0.076 1.759 sum 9.542 -28.966 -0.590 30.503 Atomic orbital electron populations 1.70107 1.07992 1.27887 1.51622 1.26040 0.95745 1.03611 0.94762 0.85460 0.78179 0.77851 0.79300 1.18976 1.21194 1.18966 1.21645 0.93761 0.91939 1.50575 0.91445 1.18935 0.94432 0.92955 0.95043 1.21582 0.98423 0.91469 1.02215 1.21086 0.91303 0.84592 1.00375 1.44984 1.10959 1.03221 1.79000 1.16102 0.84834 0.81142 0.77384 1.90910 1.16356 1.84637 1.59226 1.42138 1.09546 1.02662 1.79639 1.16664 1.02611 0.83138 0.91290 1.20917 0.99583 0.95311 0.95176 1.20897 0.99177 0.94322 0.95988 1.20521 1.00506 1.00809 0.89714 1.20816 0.99183 0.93682 0.96646 1.20989 0.99862 0.96136 0.94223 1.20990 1.01744 0.98719 0.89995 1.22327 1.00522 0.94196 0.98484 1.21072 1.03892 0.97956 0.88002 1.21090 1.01335 1.00259 0.88632 1.22309 1.01821 0.92801 0.97995 1.20983 1.01822 0.99156 0.89655 0.92797 0.99023 0.99003 0.91235 0.91251 0.93659 0.93600 0.75053 0.74461 0.83751 0.88739 0.93374 0.92033 0.88054 0.89533 0.88117 0.90009 0.88430 0.89283 0.89490 0.90534 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 11 C 0.15 5.61 5.67 86.38 0.49 6.10 16 12 N -0.73 -21.41 5.56 -478.54 -2.66 -24.07 16 13 C 0.70 23.11 8.53 179.05 1.53 24.64 16 14 O -0.63 -27.40 16.32 -4.01 -0.07 -27.46 16 15 N -0.69 -17.02 5.09 -316.98 -1.61 -18.63 16 16 C 0.15 4.09 5.28 38.21 0.20 4.29 16 17 C -0.11 -2.67 6.10 -19.50 -0.12 -2.79 16 18 C -0.10 -2.15 6.16 -19.49 -0.12 -2.27 16 19 C -0.10 -1.88 10.06 22.50 0.23 -1.65 16 20 C -0.10 -2.11 6.14 -19.57 -0.12 -2.23 16 21 C -0.11 -2.69 6.11 -19.45 -0.12 -2.81 16 22 C -0.08 -1.60 6.67 30.51 0.20 -1.40 16 23 C -0.12 -1.88 7.08 31.51 0.22 -1.66 16 24 C -0.07 -1.04 6.77 30.53 0.21 -0.83 16 25 C -0.08 -1.12 6.77 30.52 0.21 -0.91 16 26 C -0.11 -1.59 7.08 31.50 0.22 -1.37 16 27 C -0.08 -1.67 6.68 30.51 0.20 -1.47 16 28 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H -0.01 -0.49 8.14 -2.38 -0.02 -0.50 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.41 9.02 8.49 -92.71 -0.79 8.23 16 36 H 0.42 7.28 8.84 -92.71 -0.82 6.46 16 37 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -77.04 399.02 1.56 -75.48 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -0.65 Total: 22.72 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 4.24 Total: -16.58 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -3.99 Total: -100.15 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.07 Total: -27.46 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -77.04 1.56 -75.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353915608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.429 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds