Wall clock time and date at job start Tue Mar 31 2020 15:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47195 * 2 1 4 4 C 1.52994 * 109.47260 * 239.99953 * 2 1 3 5 5 O 1.45198 * 109.47224 * 119.99849 * 2 1 3 6 6 C 1.34643 * 117.00008 * 59.99919 * 5 2 1 7 7 O 1.21518 * 119.99740 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00296 * 180.02562 * 6 5 2 9 9 C 1.47152 * 120.98015 * 0.02562 * 8 6 5 10 10 C 1.53297 * 108.38008 * 230.51577 * 9 8 6 11 11 O 1.42955 * 109.22331 * 307.69394 * 10 9 8 12 12 C 1.42966 * 114.16404 * 62.58668 * 11 10 9 13 13 H 1.08998 * 109.51319 * 57.39177 * 12 11 10 14 14 C 1.50706 * 109.50937 * 177.49331 * 12 11 10 15 15 O 1.21283 * 120.00236 * 4.99934 * 14 12 11 16 16 N 1.34783 * 119.99644 * 184.99719 * 14 12 11 17 17 C 1.46496 * 119.99760 * 179.97438 * 16 14 12 18 18 C 1.52999 * 109.46886 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.46741 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00340 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99548 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99985 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00287 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47067 * 90.00030 * 23 21 19 25 25 H 1.48504 * 109.47204 * 210.00167 * 23 21 19 26 26 H 1.48501 * 109.46981 * 330.00297 * 23 21 19 27 27 C 1.47152 * 120.98375 * 179.97438 * 8 6 5 28 28 H 1.09004 * 109.46911 * 300.00047 * 1 2 3 29 29 H 1.09005 * 109.46823 * 59.99759 * 1 2 3 30 30 H 1.08993 * 109.47109 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46877 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46996 * 299.99906 * 3 2 1 33 33 H 1.08997 * 109.47209 * 59.99722 * 3 2 1 34 34 H 1.09005 * 109.47259 * 300.00347 * 4 2 1 35 35 H 1.09000 * 109.47154 * 59.99957 * 4 2 1 36 36 H 1.08994 * 109.47625 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.68371 * 110.79069 * 9 8 6 38 38 H 1.09007 * 109.71454 * 350.25328 * 9 8 6 39 39 H 1.09002 * 109.51037 * 187.76979 * 10 9 8 40 40 H 1.09006 * 109.55613 * 67.64987 * 10 9 8 41 41 H 0.97002 * 119.99832 * 0.02562 * 16 14 12 42 42 H 1.09001 * 109.47603 * 300.00544 * 17 16 14 43 43 H 1.09010 * 109.46937 * 60.00320 * 17 16 14 44 44 H 1.09000 * 109.47001 * 299.99701 * 18 17 16 45 45 H 1.09001 * 109.47273 * 60.00081 * 18 17 16 46 46 H 0.97006 * 120.00318 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.67629 * 9.76376 * 27 8 6 48 48 H 1.08994 * 109.68095 * 249.21228 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4172 9 6 2.9157 -2.0360 3.4415 10 6 4.1236 -2.9454 3.6943 11 8 3.6649 -4.2697 3.9760 12 6 2.9527 -4.8839 2.8992 13 1 3.5844 -4.9072 2.0113 14 6 2.5733 -6.2907 3.2842 15 8 2.8014 -6.6952 4.4046 16 7 1.9805 -7.0992 2.3834 17 6 1.6123 -8.4669 2.7575 18 6 0.9614 -9.1650 1.5617 19 6 0.5820 -10.5717 1.9467 20 1 0.7852 -10.9320 2.9444 21 6 -0.0235 -11.3991 1.0250 22 7 -0.3542 -12.6270 1.3607 23 14 -0.3744 -10.7763 -0.7009 24 1 0.7894 -11.0643 -1.5772 25 1 -1.5792 -11.4584 -1.2379 26 1 -0.6122 -9.3110 -0.6594 27 6 1.6843 -4.0736 2.6061 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 2.3483 -1.9143 4.3642 38 1 3.2565 -1.0624 3.0892 39 1 4.6917 -2.5682 4.5446 40 1 4.7601 -2.9610 2.8094 41 1 1.7984 -6.7757 1.4873 42 1 2.5059 -9.0152 3.0557 43 1 0.9086 -8.4390 3.5896 44 1 0.0678 -8.6168 1.2633 45 1 1.6653 -9.1928 0.7299 46 1 -0.7806 -13.2090 0.7123 47 1 1.2096 -4.4497 1.6998 48 1 0.9931 -4.1568 3.4447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363983045.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:13 Heat of formation + Delta-G solvation = -158.227780 kcal Electronic energy + Delta-G solvation = -28982.891973 eV Core-core repulsion = 24845.461489 eV Total energy + Delta-G solvation = -4137.430484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33609 -40.12618 -38.62624 -37.30603 -35.37239 -34.96276 -34.17916 -32.93675 -32.06495 -30.11747 -28.36797 -27.80142 -27.73334 -25.77712 -24.47132 -23.42919 -21.67030 -20.84971 -20.28487 -19.70955 -18.48859 -17.26112 -17.16855 -16.90853 -16.64208 -16.52815 -15.88589 -15.69610 -15.07333 -14.94087 -14.79747 -14.57300 -14.23358 -14.17323 -14.00428 -13.83392 -13.28414 -12.97657 -12.89222 -12.63056 -12.58883 -12.57162 -12.28381 -12.15424 -11.95949 -11.82517 -11.68794 -11.50174 -11.22539 -11.19819 -10.75328 -10.56158 -10.41223 -10.33302 -10.27717 -9.96362 -9.56392 -9.31788 -9.03650 -8.68024 -8.58224 -6.10996 -4.11383 1.63028 2.45383 2.75052 2.85853 3.26209 3.33105 3.34402 3.35600 3.89969 4.27075 4.32268 4.36727 4.38195 4.46956 4.51353 4.62865 4.66415 4.81043 4.95317 4.96723 5.08006 5.15820 5.18947 5.21990 5.30760 5.31197 5.33019 5.40260 5.48432 5.48765 5.59319 5.81123 5.93555 5.99716 6.05283 6.07647 6.17507 6.53455 6.62294 6.70485 6.91218 7.11421 7.21628 7.65411 7.77444 7.94662 8.39542 8.46037 8.93195 9.49005 11.01917 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.002820 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.720133 B = 9924.974789 C =11727.648515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.656 3.344 7 O -0.561 6.561 8 N -0.599 5.599 9 C 0.075 3.925 10 C 0.046 3.954 11 O -0.347 6.347 12 C 0.061 3.939 13 H 0.089 0.911 14 C 0.516 3.484 15 O -0.518 6.518 16 N -0.721 5.721 17 C 0.131 3.869 18 C -0.023 4.023 19 C -0.523 4.523 20 H 0.076 0.924 21 C 0.070 3.930 22 N -0.898 5.898 23 Si 0.881 3.119 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.265 1.265 27 C 0.105 3.895 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.059 0.941 41 H 0.397 0.603 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.018 0.982 46 H 0.265 0.735 47 H 0.114 0.886 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 31.684 -2.665 32.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.277 6.277 6 C 0.411 3.589 7 O -0.449 6.449 8 N -0.341 5.341 9 C -0.047 4.047 10 C -0.032 4.032 11 O -0.264 6.264 12 C -0.002 4.002 13 H 0.107 0.893 14 C 0.299 3.701 15 O -0.393 6.393 16 N -0.373 5.373 17 C 0.009 3.991 18 C -0.060 4.060 19 C -0.562 4.562 20 H 0.094 0.906 21 C -0.133 4.133 22 N -0.536 5.536 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 C -0.017 4.017 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.231 0.769 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.036 0.964 46 H 0.075 0.925 47 H 0.132 0.868 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.010 31.016 -2.042 31.863 hybrid contribution -0.360 0.546 -1.682 1.804 sum 6.650 31.561 -3.724 32.469 Atomic orbital electron populations 1.22524 0.93840 1.05233 1.02552 1.22117 0.94505 0.91490 0.82003 1.21861 1.02225 0.92433 1.03205 1.22525 1.01547 1.03633 0.96453 1.86273 1.71492 1.23362 1.46595 1.17889 0.78739 0.80696 0.81558 1.90933 1.40868 1.70301 1.42818 1.46899 1.53604 1.11903 1.21678 1.22504 0.92499 0.97632 0.92088 1.23083 0.94789 0.82585 1.02726 1.88144 1.73082 1.28090 1.37071 1.22378 0.94057 0.92032 0.91712 0.89322 1.19739 0.78916 0.85707 0.85763 1.90736 1.52781 1.75425 1.20333 1.46284 1.60752 1.15301 1.14977 1.21576 0.99714 0.78117 0.99648 1.19809 0.95797 0.97022 0.93407 1.20902 1.39902 0.94685 1.00663 0.90567 1.24996 0.94909 0.94663 0.98682 1.69903 1.41588 1.06727 1.35400 0.86766 0.78087 0.79537 0.84785 1.20229 1.21262 1.18979 1.22252 0.96320 0.78181 1.04909 0.92160 0.91018 0.89284 0.91461 0.90039 0.91459 0.89283 0.91006 0.92156 0.89929 0.87876 0.86775 0.92314 0.76902 0.91693 0.91620 0.95843 0.96356 0.92536 0.86824 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 8.37 37.16 0.31 -1.21 16 2 C 0.14 1.09 1.13 -90.62 -0.10 0.99 16 3 C -0.14 -0.74 8.85 37.16 0.33 -0.41 16 4 C -0.18 -1.51 8.37 37.15 0.31 -1.20 16 5 O -0.36 -3.51 8.58 -40.33 -0.35 -3.86 16 6 C 0.66 7.48 7.75 54.05 0.42 7.90 16 7 O -0.56 -7.61 11.35 -19.29 -0.22 -7.82 16 8 N -0.60 -6.15 3.02 -178.03 -0.54 -6.69 16 9 C 0.08 0.58 6.65 -3.53 -0.02 0.55 16 10 C 0.05 0.37 6.98 37.31 0.26 0.63 16 11 O -0.35 -4.40 9.92 -55.06 -0.55 -4.95 16 12 C 0.06 0.75 3.19 -27.71 -0.09 0.66 16 13 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 14 C 0.52 8.36 7.18 -10.98 -0.08 8.28 16 15 O -0.52 -10.65 16.51 -14.28 -0.24 -10.88 16 16 N -0.72 -11.53 5.52 -60.29 -0.33 -11.86 16 17 C 0.13 2.62 5.61 -4.04 -0.02 2.60 16 18 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 19 C -0.52 -14.56 9.66 -34.44 -0.33 -14.90 16 20 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 23 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 27 C 0.11 1.18 5.89 -3.51 -0.02 1.16 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.63 7.01 -51.93 -0.36 0.27 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.40 5.30 8.47 -40.82 -0.35 4.95 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 44 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 45 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.11 1.28 7.08 -51.93 -0.37 0.92 16 48 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -34.74 385.74 -7.51 -42.25 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.96 Total: 1.81 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 0.75 Total: 6.32 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.10 Total: -45.08 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.35 Total: -27.52 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.74 -7.51 -42.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363983045.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.980 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds