Wall clock time and date at job start Tue Mar 31 2020 15:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99961 * 2 1 4 4 C 1.50698 * 109.45257 * 296.19881 * 3 2 1 5 5 O 1.21283 * 120.00448 * 143.87854 * 4 3 2 6 6 N 1.34777 * 119.99424 * 323.87856 * 4 3 2 7 7 C 1.37106 * 119.99905 * 175.21320 * 6 4 3 8 8 H 1.08001 * 119.99568 * 359.97438 * 7 6 4 9 9 C 1.38944 * 119.99899 * 180.02562 * 7 6 4 10 10 N 1.31415 * 119.99712 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00471 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47163 * 90.00232 * 11 9 7 13 13 H 1.48493 * 109.47515 * 210.00366 * 11 9 7 14 14 H 1.48506 * 109.47261 * 330.00676 * 11 9 7 15 15 C 1.53044 * 109.45824 * 56.16298 * 3 2 1 16 16 C 1.53195 * 109.31274 * 58.65646 * 15 3 2 17 17 N 1.46921 * 108.77563 * 54.63238 * 16 15 3 18 18 C 1.34777 * 120.62747 * 126.36574 * 17 16 15 19 19 O 1.21513 * 120.00527 * 0.02562 * 18 17 16 20 20 O 1.34641 * 120.00077 * 179.97438 * 18 17 16 21 21 C 1.45198 * 117.00063 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.47384 * 60.00342 * 21 20 18 23 23 C 1.53001 * 109.47262 * 299.99989 * 21 20 18 24 24 C 1.53003 * 109.46922 * 179.97438 * 21 20 18 25 25 C 1.46921 * 118.74226 * 306.64420 * 17 16 15 26 26 C 1.52766 * 109.00794 * 53.31217 * 25 17 16 27 27 H 1.08997 * 109.46983 * 184.04558 * 1 2 3 28 28 H 1.09001 * 109.47354 * 304.04984 * 1 2 3 29 29 H 1.09004 * 109.47169 * 64.04254 * 1 2 3 30 30 H 0.96996 * 120.00697 * 355.21203 * 6 4 3 31 31 H 0.97003 * 119.99974 * 179.97438 * 10 9 7 32 32 H 1.08993 * 109.49853 * 298.70328 * 15 3 2 33 33 H 1.09008 * 109.52479 * 178.62055 * 15 3 2 34 34 H 1.09003 * 109.58397 * 294.84545 * 16 15 3 35 35 H 1.08995 * 109.58316 * 174.42225 * 16 15 3 36 36 H 1.09004 * 109.46912 * 300.00198 * 22 21 20 37 37 H 1.09005 * 109.46864 * 59.99383 * 22 21 20 38 38 H 1.08994 * 109.47149 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.46998 * 179.97438 * 23 21 20 40 40 H 1.08995 * 109.47169 * 300.00332 * 23 21 20 41 41 H 1.08997 * 109.46910 * 60.00347 * 23 21 20 42 42 H 1.08994 * 109.47485 * 300.00120 * 24 21 20 43 43 H 1.09004 * 109.47272 * 60.00468 * 24 21 20 44 44 H 1.09006 * 109.47013 * 179.97438 * 24 21 20 45 45 H 1.08995 * 109.58892 * 173.14036 * 25 17 16 46 46 H 1.08999 * 109.58584 * 293.56777 * 25 17 16 47 47 H 1.09000 * 109.56269 * 185.55937 * 26 25 17 48 48 H 1.08992 * 109.39130 * 65.51293 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6412 2.0191 -1.2750 5 8 1.4245 3.2124 -1.2613 6 7 1.5520 1.3312 -2.4306 7 6 1.1215 1.9593 -3.5707 8 1 0.8534 3.0052 -3.5427 9 6 1.0290 1.2500 -4.7619 10 7 0.6159 1.8519 -5.8546 11 14 1.4919 -0.5590 -4.8102 12 1 0.2936 -1.3847 -4.5144 13 1 2.0085 -0.9020 -6.1595 14 1 2.5417 -0.8287 -3.7950 15 6 1.4835 2.0980 1.1986 16 6 1.8302 1.3522 2.4911 17 7 3.2782 1.1049 2.5204 18 6 4.0194 1.4907 3.5778 19 8 3.4910 2.0485 4.5192 20 8 5.3453 1.2572 3.5916 21 6 6.0804 1.6996 4.7631 22 6 5.5270 1.0006 6.0065 23 6 5.9280 3.2140 4.9190 24 6 7.5607 1.3496 4.5984 25 6 3.9038 0.4345 1.3724 26 6 3.5330 1.1857 0.0949 27 1 -0.3633 -1.0251 0.0725 28 1 -0.3634 0.5754 0.8515 29 1 -0.3634 0.4498 -0.9240 30 1 1.7924 0.3919 -2.4557 31 1 0.5517 1.3569 -6.6863 32 1 0.4016 2.2031 1.1183 33 1 1.9448 3.0856 1.2135 34 1 1.2966 0.4022 2.5191 35 1 1.5457 1.9590 3.3506 36 1 4.4722 1.2494 6.1240 37 1 5.6355 -0.0784 5.8953 38 1 6.0791 1.3323 6.8858 39 1 6.4794 3.5459 5.7986 40 1 6.3223 3.7119 4.0332 41 1 4.8734 3.4628 5.0366 42 1 7.6690 0.2708 4.4876 43 1 7.9554 1.8473 3.7125 44 1 8.1127 1.6821 5.4776 45 1 4.9869 0.4360 1.4941 46 1 3.5427 -0.5919 1.3074 47 1 3.9097 0.6413 -0.7710 48 1 3.9754 2.1815 0.1193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371490038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:41 Heat of formation + Delta-G solvation = -154.427952 kcal Electronic energy + Delta-G solvation = -30336.811790 eV Core-core repulsion = 26199.546079 eV Total energy + Delta-G solvation = -4137.265711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04828 -40.02925 -37.86992 -36.89964 -35.83966 -34.25920 -34.02688 -31.90518 -31.64781 -31.12572 -27.61542 -27.55414 -26.91886 -26.04621 -24.58387 -23.32412 -22.30441 -20.60654 -19.49087 -19.13547 -18.61747 -17.97213 -16.76295 -16.62004 -16.22357 -15.57988 -15.49405 -15.20120 -14.95751 -14.68081 -14.37983 -14.18826 -13.91330 -13.63295 -13.39254 -13.15655 -12.97488 -12.87725 -12.66638 -12.54582 -12.35237 -12.18554 -12.09529 -12.08146 -12.02914 -11.59677 -11.47319 -11.37143 -11.23102 -11.15807 -11.02906 -10.67268 -10.53645 -10.49087 -10.10058 -10.02293 -9.74399 -9.61202 -8.83014 -8.33884 -8.23733 -6.39898 -3.90867 2.08276 2.80654 2.99851 3.06083 3.12354 3.51737 3.72576 3.86875 4.04765 4.44575 4.52500 4.56954 4.70826 4.75196 4.86365 5.04787 5.21641 5.25213 5.26462 5.33242 5.34544 5.37218 5.47737 5.50056 5.51195 5.54810 5.59191 5.66817 5.69269 5.74987 5.78234 5.85347 5.90028 5.95366 6.03771 6.09835 6.14957 6.22202 6.32322 6.38116 6.48242 7.20290 7.34919 7.51498 8.05693 8.30097 8.50541 8.85387 9.34588 9.72224 10.72452 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.003091 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.658641 B = 9055.752723 C = 9262.799750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.376 6.376 3 C 0.110 3.890 4 C 0.426 3.574 5 O -0.575 6.575 6 N -0.572 5.572 7 C -0.309 4.309 8 H 0.120 0.880 9 C 0.045 3.955 10 N -0.875 5.875 11 Si 0.877 3.123 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.266 1.266 15 C -0.143 4.143 16 C 0.133 3.867 17 N -0.590 5.590 18 C 0.654 3.346 19 O -0.574 6.574 20 O -0.362 6.362 21 C 0.135 3.865 22 C -0.182 4.182 23 C -0.184 4.184 24 C -0.140 4.140 25 C 0.118 3.882 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.377 0.623 31 H 0.275 0.725 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.628 -6.622 19.926 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.295 6.295 3 C 0.067 3.933 4 C 0.211 3.789 5 O -0.458 6.458 6 N -0.210 5.210 7 C -0.437 4.437 8 H 0.137 0.863 9 C -0.159 4.159 10 N -0.514 5.514 11 Si 0.703 3.297 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.191 1.191 15 C -0.181 4.181 16 C 0.012 3.988 17 N -0.330 5.330 18 C 0.409 3.591 19 O -0.464 6.464 20 O -0.277 6.277 21 C 0.098 3.902 22 C -0.239 4.239 23 C -0.241 4.241 24 C -0.198 4.198 25 C -0.004 4.004 26 C -0.156 4.156 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.210 0.790 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.107 0.893 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.433 -5.832 20.017 22.884 hybrid contribution 0.089 -1.162 -0.430 1.242 sum 9.522 -6.993 19.588 22.875 Atomic orbital electron populations 1.22896 0.80949 1.02466 1.01439 1.87861 1.20094 1.26542 1.95014 1.21646 0.94357 0.83361 0.93894 1.20146 0.85659 0.88122 0.84971 1.90571 1.54744 1.14641 1.85880 1.42245 1.58509 1.11573 1.08650 1.19472 1.40856 0.98714 0.84706 0.86285 1.25061 0.97151 0.98586 0.95078 1.69627 1.45011 1.36800 0.99985 0.86700 0.79481 0.84927 0.78640 1.19416 1.20060 1.19093 1.22265 1.02828 1.00313 0.92734 1.21618 0.77453 1.00887 0.98815 1.46981 1.08062 1.60778 1.17167 1.17939 0.80706 0.77707 0.82722 1.90866 1.72701 1.47108 1.35703 1.86298 1.19313 1.76891 1.45198 1.22043 0.90726 0.94679 0.82715 1.22508 1.04406 1.00450 0.96583 1.22513 1.05284 0.93960 1.02317 1.21855 0.92002 1.02803 1.03101 1.21600 0.98415 0.96470 0.83911 1.21839 0.92607 1.02649 0.98469 0.89665 0.93576 0.92708 0.78958 0.91454 0.89516 0.89236 0.90661 0.88542 0.89360 0.92278 0.91320 0.91318 0.92095 0.89328 0.91513 0.91408 0.90279 0.88996 0.90123 0.89346 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.12 101.05 1.02 1.29 16 2 O -0.38 -5.83 8.50 -35.23 -0.30 -6.13 16 3 C 0.11 1.85 0.62 -91.73 -0.06 1.79 16 4 C 0.43 9.48 5.58 -10.99 -0.06 9.42 16 5 O -0.57 -15.08 15.70 5.56 0.09 -15.00 16 6 N -0.57 -13.47 4.53 -10.96 -0.05 -13.52 16 7 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 8 H 0.12 3.78 7.40 -52.49 -0.39 3.39 16 9 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 10 N -0.88 -25.07 13.96 55.50 0.77 -24.29 16 11 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 15 C -0.14 -2.18 3.86 -26.61 -0.10 -2.28 16 16 C 0.13 1.74 6.16 -3.71 -0.02 1.72 16 17 N -0.59 -7.87 2.98 -178.83 -0.53 -8.40 16 18 C 0.65 9.18 7.74 54.06 0.42 9.60 16 19 O -0.57 -8.89 11.29 -19.28 -0.22 -9.10 16 20 O -0.36 -4.52 8.53 -40.33 -0.34 -4.86 16 21 C 0.14 1.37 1.13 -90.62 -0.10 1.27 16 22 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 23 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 24 C -0.14 -1.04 8.85 37.16 0.33 -0.72 16 25 C 0.12 1.45 6.18 -3.93 -0.02 1.43 16 26 C -0.12 -1.71 5.08 -26.83 -0.14 -1.85 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.58 5.98 -51.93 -0.31 0.27 16 29 H 0.05 0.93 7.08 -51.93 -0.37 0.56 16 30 H 0.38 8.13 5.31 -40.82 -0.22 7.91 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.09 1.31 6.48 -51.93 -0.34 0.97 16 33 H 0.09 1.51 7.93 -51.92 -0.41 1.10 16 34 H 0.08 0.90 7.51 -51.93 -0.39 0.51 16 35 H 0.10 1.26 7.00 -51.93 -0.36 0.90 16 36 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 1.02 6.93 -51.93 -0.36 0.66 16 46 H 0.08 0.94 7.81 -51.93 -0.41 0.54 16 47 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -32.24 372.58 -5.60 -37.84 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -7.56 Total: 12.29 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 1.64 Total: 11.09 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.19 Total: -46.22 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.77 Total: -35.10 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.24 -5.60 -37.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371490038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.584 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds